Wall clock time and date at job start Wed Apr 1 2020 05:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.87349 * 2 1 4 4 C 1.54328 * 109.88356 * 238.98273 * 2 1 3 5 5 H 1.08997 * 110.72037 * 144.23190 * 4 2 1 6 6 N 1.46902 * 110.71840 * 21.13953 * 4 2 1 7 7 C 1.46895 * 110.99941 * 154.99959 * 6 4 2 8 8 C 1.50701 * 109.47449 * 179.97438 * 7 6 4 9 9 O 1.21295 * 119.99599 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00616 * 180.02562 * 8 7 6 11 11 C 1.37090 * 120.00396 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00120 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00319 * 179.97438 * 11 10 8 14 14 N 1.31415 * 120.00022 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00184 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46981 * 180.02562 * 15 13 11 17 17 H 1.48499 * 109.46998 * 299.99962 * 15 13 11 18 18 H 1.48493 * 109.47136 * 60.00015 * 15 13 11 19 19 C 1.55159 * 102.94111 * 262.77563 * 4 2 1 20 20 C 1.54903 * 101.58087 * 324.49797 * 19 4 2 21 21 N 1.47018 * 109.88334 * 121.17641 * 2 1 3 22 22 C 1.34783 * 125.64714 * 300.44419 * 21 2 1 23 23 O 1.21684 * 119.99870 * 358.19823 * 22 21 2 24 24 C 1.46795 * 120.00014 * 178.21207 * 22 21 2 25 25 C 1.36404 * 125.84686 * 187.89797 * 24 22 21 26 26 C 1.41278 * 107.03445 * 179.84724 * 25 24 22 27 27 C 1.43195 * 126.45587 * 180.15616 * 26 25 24 28 28 N 8.56109 * 97.89534 * 107.22144 * 2 1 3 29 29 C 1.38181 * 107.08927 * 0.40809 * 26 25 24 30 30 N 1.34433 * 108.38216 * 359.75090 * 29 26 25 31 31 H 0.96998 * 125.40234 * 180.02562 * 30 29 26 32 32 H 1.09006 * 109.46836 * 181.01647 * 1 2 3 33 33 H 1.08997 * 109.47149 * 301.01556 * 1 2 3 34 34 H 1.09001 * 109.47234 * 61.01971 * 1 2 3 35 35 H 1.00905 * 110.99787 * 278.95408 * 6 4 2 36 36 H 1.09004 * 109.47068 * 59.99941 * 7 6 4 37 37 H 1.08995 * 109.47644 * 299.99826 * 7 6 4 38 38 H 0.97003 * 119.99929 * 0.02562 * 10 8 7 39 39 H 0.96996 * 120.00189 * 180.02562 * 14 13 11 40 40 H 1.08997 * 111.00333 * 82.57156 * 19 4 2 41 41 H 1.09004 * 111.00097 * 206.41980 * 19 4 2 42 42 H 1.08999 * 110.36820 * 278.17120 * 20 19 4 43 43 H 1.09002 * 110.45751 * 155.89681 * 20 19 4 44 44 H 1.08005 * 126.48303 * 359.96091 * 25 24 22 45 45 H 1.08003 * 125.80855 * 179.76622 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7478 -1.2438 5 1 2.9639 -0.2791 -1.6205 6 7 1.0265 -0.7996 -2.2915 7 6 1.6356 -0.9456 -3.6202 8 6 0.5524 -0.9956 -4.6667 9 8 -0.6126 -0.9178 -4.3379 10 7 0.8778 -1.1278 -5.9679 11 6 -0.1076 -1.1727 -6.9199 12 1 -1.1449 -1.1026 -6.6272 13 6 0.2280 -1.3085 -8.2614 14 7 1.4900 -1.3944 -8.6176 15 14 -1.1148 -1.3705 -9.5585 16 1 -0.4990 -1.5187 -10.9017 17 1 -2.0066 -2.5278 -9.2929 18 1 -1.9062 -0.1149 -9.5120 19 6 2.3519 -2.1686 -0.6953 20 6 2.8568 -1.8508 0.7342 21 7 2.0300 -0.7157 1.1829 22 6 1.7753 -0.3879 2.4652 23 8 1.1036 0.5941 2.7202 24 6 2.3085 -1.2155 3.5541 25 6 2.0042 -1.0870 4.8776 26 6 2.7321 -2.0817 5.5680 27 6 2.7176 -2.3209 6.9798 28 7 2.7060 -2.5106 8.0998 29 6 3.4651 -2.7766 4.6250 30 7 3.2062 -2.2509 3.4152 31 1 3.5903 -2.5531 2.5773 32 1 -0.3633 -1.0276 0.0182 33 1 -0.3633 0.5295 0.8807 34 1 -0.3634 0.4979 -0.8990 35 1 0.3656 -1.5410 -2.1132 36 1 2.2162 -1.8675 -3.6545 37 1 2.2905 -0.0964 -3.8151 38 1 1.8094 -1.1912 -6.2308 39 1 1.7243 -1.4888 -9.5540 40 1 1.4452 -2.7727 -0.6642 41 1 3.1271 -2.6601 -1.2833 42 1 3.9091 -1.5677 0.7107 43 1 2.7102 -2.7093 1.3896 44 1 1.3323 -0.3631 5.3147 45 1 4.1323 -3.6018 4.8258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755650696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:22 Heat of formation + Delta-G solvation = 2.948345 kcal Electronic energy + Delta-G solvation = -28889.120643 eV Core-core repulsion = 24714.172848 eV Total energy + Delta-G solvation = -4174.947795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.72376 -41.02071 -40.04323 -38.85226 -37.45363 -36.20327 -35.58169 -33.26652 -32.92799 -32.08853 -31.84104 -30.31027 -28.17372 -26.58894 -25.64110 -24.71818 -23.90178 -22.74857 -21.44053 -21.11092 -20.71904 -19.90081 -19.30393 -17.79269 -17.64222 -17.34622 -16.95809 -16.84636 -16.39868 -16.26749 -16.02965 -15.67326 -15.31884 -15.15159 -14.84356 -14.75940 -14.39466 -14.39291 -14.11846 -14.06047 -13.90699 -13.80077 -13.58489 -13.47190 -13.37660 -13.12101 -12.96784 -12.95067 -12.70225 -12.45874 -12.40122 -12.11495 -11.81931 -11.71525 -11.47192 -11.16732 -10.30031 -10.19677 -9.97675 -9.83123 -9.35870 -9.23160 -8.44198 -5.92069 0.40108 0.75610 1.41204 1.43734 1.53538 1.61485 1.83780 2.01217 2.10767 2.19274 2.31424 2.66955 2.94207 3.12186 3.23977 3.40230 3.43573 3.66043 3.77218 4.06966 4.09202 4.16859 4.22294 4.26492 4.34365 4.41383 4.51122 4.55569 4.59413 4.65557 4.70922 4.75394 4.91021 5.02527 5.06401 5.08695 5.32145 5.36741 5.43703 5.44577 5.60417 5.93102 6.14599 6.27790 6.40276 6.42315 6.64165 6.64986 7.02631 7.16560 7.61310 8.17214 8.72645 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.035050 B = 0.001691 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.658998 B =16559.075388 C =16918.144082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.146 3.854 3 H 0.070 0.930 4 C 0.086 3.914 5 H 0.115 0.885 6 N -0.671 5.671 7 C 0.068 3.932 8 C 0.436 3.564 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.334 4.334 12 H 0.077 0.923 13 C -0.010 4.010 14 N -0.918 5.918 15 Si 0.988 3.012 16 H -0.271 1.271 17 H -0.273 1.273 18 H -0.275 1.275 19 C -0.156 4.156 20 C 0.084 3.916 21 N -0.612 5.612 22 C 0.598 3.402 23 O -0.569 6.569 24 C -0.056 4.056 25 C -0.066 4.066 26 C -0.160 4.160 27 C 0.314 3.686 28 N -0.489 5.489 29 C 0.141 3.859 30 N -0.510 5.510 31 H 0.442 0.558 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.348 0.652 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.146 0.854 45 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.642 -6.690 19.744 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.043 3.957 3 H 0.088 0.912 4 C -0.025 4.025 5 H 0.133 0.867 6 N -0.303 5.303 7 C -0.064 4.064 8 C 0.224 3.776 9 O -0.512 6.512 10 N -0.211 5.211 11 C -0.464 4.464 12 H 0.095 0.905 13 C -0.210 4.210 14 N -0.559 5.559 15 Si 0.812 3.188 16 H -0.195 1.195 17 H -0.198 1.198 18 H -0.200 1.200 19 C -0.196 4.196 20 C -0.039 4.039 21 N -0.345 5.345 22 C 0.389 3.611 23 O -0.448 6.448 24 C -0.167 4.167 25 C -0.093 4.093 26 C -0.170 4.170 27 C 0.001 3.999 28 N -0.166 5.166 29 C -0.006 4.006 30 N -0.112 5.112 31 H 0.291 0.709 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.168 0.832 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.231 0.769 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.134 0.866 42 H 0.129 0.871 43 H 0.115 0.885 44 H 0.164 0.836 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 12.544 -5.716 21.383 25.442 hybrid contribution -0.311 -0.579 -1.559 1.691 sum 12.233 -6.295 19.825 24.131 Atomic orbital electron populations 1.21793 0.95355 1.01453 1.01496 1.21429 0.94517 0.95844 0.83939 0.91154 1.22646 0.94428 0.95716 0.89706 0.86733 1.59929 1.16352 1.54061 0.99927 1.21556 0.94039 1.03237 0.87518 1.21014 0.90752 0.81957 0.83917 1.90512 1.22461 1.56547 1.81679 1.41908 1.09455 1.64564 1.05130 1.19599 0.90048 1.49334 0.87407 0.90531 1.25942 0.99260 0.96385 0.99392 1.69647 1.17270 1.49902 1.19093 0.85059 0.77821 0.78802 0.77090 1.19543 1.19779 1.20033 1.23540 1.03512 0.97042 0.95487 1.22857 0.96490 0.88419 0.96096 1.48505 1.50700 1.31021 1.04278 1.16973 0.79651 0.83618 0.80860 1.90855 1.41617 1.28925 1.83444 1.19534 1.04700 0.98313 0.94194 1.21075 0.99332 0.98128 0.90790 1.15411 1.10967 1.05737 0.84932 1.24871 0.91614 0.91721 0.91714 1.81311 1.11315 1.10837 1.13165 1.23030 0.97749 0.98101 0.81690 1.42606 1.33238 1.24734 1.10646 0.70896 0.93242 0.94014 0.91360 0.83154 0.90455 0.87560 0.76869 0.91362 0.90722 0.86569 0.87096 0.88467 0.83612 0.74617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.26 71.98 0.59 -3.10 16 2 C 0.15 2.92 3.47 45.34 0.16 3.08 16 3 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 4 C 0.09 1.37 3.15 46.11 0.15 1.51 16 5 H 0.11 1.46 7.82 -2.39 -0.02 1.44 16 6 N -0.67 -16.95 4.39 -489.45 -2.15 -19.10 16 7 C 0.07 1.91 6.03 85.56 0.52 2.42 16 8 C 0.44 19.01 7.82 87.66 0.69 19.69 16 9 O -0.63 -32.82 15.78 -3.08 -0.05 -32.87 16 10 N -0.57 -27.56 5.29 -306.99 -1.62 -29.18 16 11 C -0.33 -18.31 9.68 84.04 0.81 -17.50 16 12 H 0.08 4.51 7.16 -2.91 -0.02 4.49 16 13 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 14 N -0.92 -47.60 13.05 21.66 0.28 -47.32 16 15 Si 0.99 41.79 29.55 68.60 2.03 43.82 16 16 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 C -0.16 -1.36 6.67 31.98 0.21 -1.14 16 20 C 0.08 0.43 5.44 86.85 0.47 0.90 16 21 N -0.61 -9.34 3.08 -792.60 -2.44 -11.79 16 22 C 0.60 12.01 7.58 86.48 0.66 12.67 16 23 O -0.57 -16.89 15.84 -4.30 -0.07 -16.95 16 24 C -0.06 -0.75 6.78 40.03 0.27 -0.48 16 25 C -0.07 -0.98 10.55 22.59 0.24 -0.74 16 26 C -0.16 -1.74 5.97 -21.30 -0.13 -1.86 16 27 C 0.31 5.16 15.83 88.33 1.40 6.55 16 28 N -0.49 -10.94 18.54 19.00 0.35 -10.59 16 29 C 0.14 0.28 11.90 84.28 1.00 1.28 16 30 N -0.51 -1.66 5.30 -183.25 -0.97 -2.63 16 31 H 0.44 -1.27 5.15 -92.71 -0.48 -1.75 16 32 H 0.05 1.24 7.98 -2.38 -0.02 1.22 16 33 H 0.04 1.22 6.82 -2.39 -0.02 1.21 16 34 H 0.07 2.05 7.40 -2.39 -0.02 2.04 16 35 H 0.35 9.61 7.45 -89.69 -0.67 8.94 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.11 2.62 8.08 -2.39 -0.02 2.60 16 38 H 0.40 17.89 7.90 -92.71 -0.73 17.16 16 39 H 0.28 13.53 8.31 -92.71 -0.77 12.75 16 40 H 0.07 0.85 7.77 -2.39 -0.02 0.83 16 41 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.11 -0.06 8.09 -2.39 -0.02 -0.08 16 43 H 0.10 0.03 5.54 -2.39 -0.01 0.01 16 44 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 45 H 0.24 -1.78 8.06 -2.91 -0.02 -1.80 16 Total: -1.00 -81.87 382.79 2.07 -79.80 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.80 Total: 23.56 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 7.50 Total: 23.25 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -6.55 Total: -120.60 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.12 Total: -49.82 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -81.87 2.07 -79.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755650696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.749 kcal (2) G-P(sol) polarization free energy of solvation -81.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds