Wall clock time and date at job start Wed Apr 1 2020 04:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47717 * 2 1 4 4 C 1.50698 * 109.46793 * 120.00864 * 2 1 3 5 5 H 1.07992 * 120.00476 * 120.00142 * 4 2 1 6 6 C 1.37878 * 119.99643 * 299.98751 * 4 2 1 7 7 N 1.31518 * 119.99984 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00333 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.47236 * 89.99137 * 8 6 4 10 10 H 1.48493 * 109.47721 * 209.99782 * 8 6 4 11 11 H 1.48503 * 109.46864 * 329.99967 * 8 6 4 12 12 N 1.46508 * 109.46713 * 240.00150 * 2 1 3 13 13 C 1.34775 * 120.00114 * 85.00394 * 12 2 1 14 14 O 1.21591 * 119.99621 * 0.02562 * 13 12 2 15 15 N 1.34772 * 119.99966 * 180.02562 * 13 12 2 16 16 C 1.39826 * 119.99894 * 185.32086 * 15 13 12 17 17 C 1.39009 * 119.91958 * 33.43718 * 16 15 13 18 18 C 1.37800 * 120.07224 * 180.02562 * 17 16 15 19 19 C 1.39655 * 119.92339 * 359.97438 * 18 17 16 20 20 C 1.47717 * 120.07632 * 179.97438 * 19 18 17 21 21 N 1.31078 * 126.31215 * 0.04537 * 20 19 18 22 22 N 1.28652 * 109.40273 * 179.97438 * 21 20 19 23 23 C 1.31184 * 109.45508 * 0.02562 * 22 21 20 24 24 N 1.38146 * 126.26961 * 180.02562 * 23 22 21 25 25 C 1.46504 * 120.00429 * 359.95255 * 24 23 22 26 26 C 1.46500 * 119.99801 * 179.97438 * 24 23 22 27 27 O 1.34636 * 107.45557 * 359.97438 * 23 22 21 28 28 C 1.39663 * 119.84917 * 0.25806 * 19 18 17 29 29 C 1.37804 * 119.91624 * 359.46989 * 28 19 18 30 30 H 1.08995 * 109.46519 * 299.99884 * 1 2 3 31 31 H 1.09004 * 109.46945 * 59.99484 * 1 2 3 32 32 H 1.08992 * 109.47198 * 180.02562 * 1 2 3 33 33 H 0.97003 * 120.00462 * 180.02562 * 7 6 4 34 34 H 0.97000 * 119.99422 * 265.00380 * 12 2 1 35 35 H 0.96997 * 119.99974 * 5.31279 * 15 13 12 36 36 H 1.07995 * 119.96667 * 359.97438 * 17 16 15 37 37 H 1.08006 * 120.03795 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.46896 * 0.02562 * 25 24 23 39 39 H 1.09003 * 109.47055 * 120.00034 * 25 24 23 40 40 H 1.08998 * 109.47200 * 240.00045 * 25 24 23 41 41 H 1.09003 * 109.47463 * 90.00090 * 26 24 23 42 42 H 1.09000 * 109.47184 * 210.00136 * 26 24 23 43 43 H 1.09003 * 109.47295 * 329.99800 * 26 24 23 44 44 H 1.07992 * 120.04400 * 179.71888 * 28 19 18 45 45 H 1.07996 * 119.95771 * 180.27493 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6251 1.2790 2.6542 9 1 -0.8025 0.8729 2.6997 10 1 0.9763 1.9950 3.9069 11 1 0.8476 2.1765 1.4921 12 7 2.0183 -0.6906 -1.1963 13 6 2.1471 -0.0183 -2.3572 14 8 1.8584 1.1616 -2.4116 15 7 2.5957 -0.6537 -3.4578 16 6 2.8352 0.0665 -4.6321 17 6 3.2929 1.3771 -4.5605 18 6 3.5295 2.0900 -5.7158 19 6 3.3094 1.4941 -6.9595 20 6 3.5613 2.2553 -8.2001 21 7 3.9911 3.4911 -8.2788 22 7 4.0962 3.8291 -9.5157 23 6 3.7368 2.8222 -10.2759 24 7 3.7177 2.8071 -11.6571 25 6 4.1246 3.9972 -12.4085 26 6 3.2899 1.6012 -12.3706 27 8 3.3913 1.8059 -9.4633 28 6 2.8448 0.1787 -7.0276 29 6 2.6157 -0.5302 -5.8683 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.9035 -0.5282 4.4375 34 1 2.2489 -1.6318 -1.1527 35 1 2.7526 -1.6107 -3.4352 36 1 3.4625 1.8375 -3.5984 37 1 3.8855 3.1081 -5.6596 38 1 4.4073 4.7871 -11.7127 39 1 4.9753 3.7520 -13.0444 40 1 3.2945 4.3376 -13.0274 41 1 2.2135 1.6405 -12.5378 42 1 3.8047 1.5446 -13.3297 43 1 3.5332 0.7212 -11.7752 44 1 2.6692 -0.2837 -7.9876 45 1 2.2608 -1.5488 -5.9203 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119078644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:38 Heat of formation + Delta-G solvation = 69.140427 kcal Electronic energy + Delta-G solvation = -28541.316385 eV Core-core repulsion = 24369.238894 eV Total energy + Delta-G solvation = -4172.077491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.09580 -40.44085 -38.68996 -37.59492 -36.24839 -35.51902 -34.51933 -32.54701 -31.66115 -31.10602 -29.98649 -29.01537 -28.43704 -25.95680 -25.22540 -24.14752 -23.27198 -22.17961 -21.90654 -21.08236 -20.02513 -18.47192 -18.36632 -17.68259 -17.66989 -16.98413 -16.44010 -16.30529 -15.45654 -15.34829 -15.21242 -15.05620 -14.54857 -14.19400 -14.03932 -13.53114 -13.33986 -13.21173 -13.16954 -13.10235 -12.94268 -12.75338 -12.56202 -12.52916 -12.22002 -11.93006 -11.86489 -11.51624 -11.36657 -11.13825 -10.98277 -10.83085 -10.27507 -10.18541 -9.87598 -9.53020 -9.27501 -9.07794 -8.81216 -8.70953 -8.26735 -7.70452 -6.24063 -4.27254 0.48392 1.29866 1.30257 1.64397 2.45544 2.76057 2.92992 3.22292 3.34978 3.39336 3.44502 3.84298 4.00967 4.23061 4.29288 4.58201 4.63275 4.69258 4.78892 4.81148 4.82200 4.94638 4.98535 5.05416 5.10924 5.19579 5.23105 5.32072 5.45802 5.53362 5.90419 6.07986 6.20342 6.21638 6.27411 6.32979 6.34277 6.44049 6.47575 6.52542 6.76270 6.94159 6.98422 7.22105 7.37505 7.47391 8.20588 8.29178 8.51712 8.73430 8.96342 9.36265 10.87887 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.032150 B = 0.001748 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.720733 B =16016.127422 C =16457.602631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.253 3.747 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.709 5.709 13 C 0.694 3.306 14 O -0.579 6.579 15 N -0.693 5.693 16 C 0.208 3.792 17 C -0.123 4.123 18 C -0.046 4.046 19 C -0.050 4.050 20 C 0.198 3.802 21 N -0.255 5.255 22 N -0.343 5.343 23 C 0.417 3.583 24 N -0.576 5.576 25 C 0.105 3.895 26 C 0.092 3.908 27 O -0.243 6.243 28 C -0.066 4.066 29 C -0.158 4.158 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.268 0.732 34 H 0.394 0.606 35 H 0.407 0.593 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.129 0.871 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.812 0.624 -32.037 32.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.149 3.851 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.185 1.185 12 N -0.360 5.360 13 C 0.394 3.606 14 O -0.456 6.456 15 N -0.340 5.340 16 C 0.110 3.890 17 C -0.144 4.144 18 C -0.066 4.066 19 C -0.053 4.053 20 C -0.013 4.013 21 N -0.100 5.100 22 N -0.200 5.200 23 C 0.118 3.882 24 N -0.304 5.304 25 C -0.036 4.036 26 C -0.051 4.051 27 O -0.124 6.124 28 C -0.086 4.086 29 C -0.179 4.179 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.227 0.773 35 H 0.242 0.758 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.147 0.853 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.947 2.870 -31.519 31.787 hybrid contribution -0.963 -1.538 -0.248 1.832 sum 1.984 1.331 -31.767 31.857 Atomic orbital electron populations 1.22483 0.99324 1.00875 0.99442 1.19062 0.90012 0.94477 0.81532 0.93130 1.21002 1.33464 1.14548 0.88441 0.90171 1.24813 0.95463 0.96715 0.95467 1.69862 1.44751 1.40088 0.98073 0.86878 0.80491 0.83571 0.77581 1.20301 1.22096 1.18543 1.45497 1.68410 1.13739 1.08366 1.16124 0.78574 0.85506 0.80395 1.90913 1.56455 1.14193 1.84086 1.42881 1.69569 1.11684 1.09899 1.17756 0.93798 0.92316 0.85166 1.21239 0.99562 0.93871 0.99684 1.21011 0.96040 1.00147 0.89386 1.17072 1.08489 0.93418 0.86294 1.24867 1.02838 0.91539 0.82092 1.74461 1.15162 1.09494 1.10913 1.74807 1.27137 1.22276 0.95790 1.23294 0.94929 0.82763 0.87260 1.45199 1.72413 1.16576 0.96245 1.21828 0.99966 0.85686 0.96106 1.21817 1.00374 0.85558 0.97317 1.84745 1.69804 1.40323 1.17506 1.20854 0.96988 0.92360 0.98411 1.20713 1.05363 1.01394 0.90397 0.93351 0.94430 0.92834 0.92217 0.77296 0.75758 0.83223 0.84168 0.88839 0.91456 0.91494 0.92190 0.89862 0.90898 0.85288 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.96 37.16 0.33 -3.23 16 2 C 0.25 5.84 2.15 -69.08 -0.15 5.69 16 3 H 0.05 1.29 6.63 -51.93 -0.34 0.95 16 4 C -0.54 -14.11 9.31 -34.44 -0.32 -14.43 16 5 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 8 Si 0.89 21.45 24.37 -169.99 -4.14 17.31 16 9 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 12 N -0.71 -13.30 5.07 -59.81 -0.30 -13.61 16 13 C 0.69 12.53 8.26 -86.92 -0.72 11.81 16 14 O -0.58 -12.57 13.69 5.29 0.07 -12.50 16 15 N -0.69 -9.23 5.34 -14.19 -0.08 -9.30 16 16 C 0.21 2.74 6.28 -83.64 -0.53 2.21 16 17 C -0.12 -1.78 8.63 -39.46 -0.34 -2.12 16 18 C -0.05 -0.60 9.69 -39.21 -0.38 -0.98 16 19 C -0.05 -0.62 5.87 -104.96 -0.62 -1.24 16 20 C 0.20 2.64 7.98 -14.00 -0.11 2.52 16 21 N -0.26 -3.81 11.89 32.08 0.38 -3.43 16 22 N -0.34 -4.75 11.30 29.87 0.34 -4.41 16 23 C 0.42 4.77 8.51 -86.90 -0.74 4.03 16 24 N -0.58 -4.31 3.37 -191.72 -0.65 -4.95 16 25 C 0.10 0.51 10.76 59.85 0.64 1.15 16 26 C 0.09 0.39 10.65 59.85 0.64 1.02 16 27 O -0.24 -2.90 10.16 2.43 0.02 -2.88 16 28 C -0.07 -0.69 9.72 -39.21 -0.38 -1.07 16 29 C -0.16 -1.64 9.94 -39.45 -0.39 -2.03 16 30 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.39 6.31 8.56 -40.82 -0.35 5.96 16 35 H 0.41 3.94 8.83 -40.82 -0.36 3.58 16 36 H 0.15 2.46 6.40 -52.49 -0.34 2.13 16 37 H 0.14 1.78 7.85 -52.48 -0.41 1.37 16 38 H 0.09 0.60 7.18 -51.93 -0.37 0.23 16 39 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.08 0.14 8.07 -51.93 -0.42 -0.28 16 43 H 0.07 0.34 7.73 -51.93 -0.40 -0.06 16 44 H 0.13 1.07 7.92 -52.49 -0.42 0.66 16 45 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -34.54 379.36 -6.74 -41.28 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.72 Total: 6.51 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -3.16 Total: 5.44 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.47 Total: -60.88 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.10 Total: -15.37 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.14 Total: 17.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.54 -6.74 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119078644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.421 kcal (2) G-P(sol) polarization free energy of solvation -34.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds