Wall clock time and date at job start Wed Apr 1 2020 04:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47717 * 2 1 4 4 C 1.50698 * 109.46793 * 120.00864 * 2 1 3 5 5 H 1.07992 * 120.00476 * 120.00142 * 4 2 1 6 6 C 1.37878 * 119.99643 * 299.98751 * 4 2 1 7 7 N 1.31518 * 119.99984 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00333 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.47236 * 89.99137 * 8 6 4 10 10 H 1.48493 * 109.47721 * 209.99782 * 8 6 4 11 11 H 1.48503 * 109.46864 * 329.99967 * 8 6 4 12 12 N 1.46508 * 109.46713 * 240.00150 * 2 1 3 13 13 C 1.34775 * 120.00114 * 85.00394 * 12 2 1 14 14 O 1.21591 * 119.99621 * 0.02562 * 13 12 2 15 15 N 1.34772 * 119.99966 * 180.02562 * 13 12 2 16 16 C 1.39826 * 119.99894 * 185.32086 * 15 13 12 17 17 C 1.39009 * 119.91958 * 33.43718 * 16 15 13 18 18 C 1.37800 * 120.07224 * 180.02562 * 17 16 15 19 19 C 1.39655 * 119.92339 * 359.97438 * 18 17 16 20 20 C 1.47717 * 120.07632 * 179.97438 * 19 18 17 21 21 N 1.31078 * 126.31215 * 0.04537 * 20 19 18 22 22 N 1.28652 * 109.40273 * 179.97438 * 21 20 19 23 23 C 1.31184 * 109.45508 * 0.02562 * 22 21 20 24 24 N 1.38146 * 126.26961 * 180.02562 * 23 22 21 25 25 C 1.46504 * 120.00429 * 359.95255 * 24 23 22 26 26 C 1.46500 * 119.99801 * 179.97438 * 24 23 22 27 27 O 1.34636 * 107.45557 * 359.97438 * 23 22 21 28 28 C 1.39663 * 119.84917 * 0.25806 * 19 18 17 29 29 C 1.37804 * 119.91624 * 359.46989 * 28 19 18 30 30 H 1.08995 * 109.46519 * 299.99884 * 1 2 3 31 31 H 1.09004 * 109.46945 * 59.99484 * 1 2 3 32 32 H 1.08992 * 109.47198 * 180.02562 * 1 2 3 33 33 H 0.97003 * 120.00462 * 180.02562 * 7 6 4 34 34 H 0.97000 * 119.99422 * 265.00380 * 12 2 1 35 35 H 0.96997 * 119.99974 * 5.31279 * 15 13 12 36 36 H 1.07995 * 119.96667 * 359.97438 * 17 16 15 37 37 H 1.08006 * 120.03795 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.46896 * 0.02562 * 25 24 23 39 39 H 1.09003 * 109.47055 * 120.00034 * 25 24 23 40 40 H 1.08998 * 109.47200 * 240.00045 * 25 24 23 41 41 H 1.09003 * 109.47463 * 90.00090 * 26 24 23 42 42 H 1.09000 * 109.47184 * 210.00136 * 26 24 23 43 43 H 1.09003 * 109.47295 * 329.99800 * 26 24 23 44 44 H 1.07992 * 120.04400 * 179.71888 * 28 19 18 45 45 H 1.07996 * 119.95771 * 180.27493 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6251 1.2790 2.6542 9 1 -0.8025 0.8729 2.6997 10 1 0.9763 1.9950 3.9069 11 1 0.8476 2.1765 1.4921 12 7 2.0183 -0.6906 -1.1963 13 6 2.1471 -0.0183 -2.3572 14 8 1.8584 1.1616 -2.4116 15 7 2.5957 -0.6537 -3.4578 16 6 2.8352 0.0665 -4.6321 17 6 3.2929 1.3771 -4.5605 18 6 3.5295 2.0900 -5.7158 19 6 3.3094 1.4941 -6.9595 20 6 3.5613 2.2553 -8.2001 21 7 3.9911 3.4911 -8.2788 22 7 4.0962 3.8291 -9.5157 23 6 3.7368 2.8222 -10.2759 24 7 3.7177 2.8071 -11.6571 25 6 4.1246 3.9972 -12.4085 26 6 3.2899 1.6012 -12.3706 27 8 3.3913 1.8059 -9.4633 28 6 2.8448 0.1787 -7.0276 29 6 2.6157 -0.5302 -5.8683 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.9035 -0.5282 4.4375 34 1 2.2489 -1.6318 -1.1527 35 1 2.7526 -1.6107 -3.4352 36 1 3.4625 1.8375 -3.5984 37 1 3.8855 3.1081 -5.6596 38 1 4.4073 4.7871 -11.7127 39 1 4.9753 3.7520 -13.0444 40 1 3.2945 4.3376 -13.0274 41 1 2.2135 1.6405 -12.5378 42 1 3.8047 1.5446 -13.3297 43 1 3.5332 0.7212 -11.7752 44 1 2.6692 -0.2837 -7.9876 45 1 2.2608 -1.5488 -5.9203 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119078644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:35 Heat of formation + Delta-G solvation = 40.813886 kcal Electronic energy + Delta-G solvation = -28542.544716 eV Core-core repulsion = 24369.238894 eV Total energy + Delta-G solvation = -4173.305822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -45.01033 -41.69769 -39.86287 -38.19400 -37.18296 -37.09076 -35.88313 -34.43776 -32.80961 -32.08765 -31.48118 -29.76095 -29.13122 -27.21005 -26.65413 -25.19442 -24.28544 -23.39290 -22.73894 -22.36677 -21.56446 -19.94100 -19.19277 -18.79404 -18.56130 -18.21138 -17.91785 -17.19968 -17.12147 -16.48845 -16.05935 -15.81050 -15.78971 -15.42787 -15.12315 -15.02942 -14.86345 -14.40829 -14.14602 -14.08267 -13.74237 -13.56170 -13.51883 -13.50197 -13.42280 -13.20407 -13.19713 -12.77166 -12.74253 -12.47323 -12.14535 -12.05352 -11.88688 -11.63142 -11.33174 -11.25497 -11.10194 -10.85782 -10.03644 -9.98453 -9.50088 -8.64609 -8.36773 -6.42495 -0.48541 0.36531 0.53758 0.70674 1.29321 1.38336 1.46694 1.47524 1.66432 2.03147 2.11345 2.27704 2.79171 2.99981 3.15212 3.31051 3.64425 3.76139 3.92925 4.02486 4.24629 4.30280 4.30928 4.40476 4.44573 4.44715 4.51317 4.55372 4.58238 4.65769 4.72302 4.80049 4.88960 4.96786 5.01969 5.12125 5.22455 5.32396 5.37318 5.39595 5.46668 5.62166 5.70614 5.76530 5.89714 5.96863 6.27775 6.60049 7.10771 7.23642 7.36364 7.56683 8.78156 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.032150 B = 0.001748 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.720733 B =16016.127422 C =16457.602631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.259 3.741 3 H 0.024 0.976 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.936 3.064 9 H -0.260 1.260 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.707 5.707 13 C 0.696 3.304 14 O -0.618 6.618 15 N -0.672 5.672 16 C 0.189 3.811 17 C -0.141 4.141 18 C -0.053 4.053 19 C -0.052 4.052 20 C 0.190 3.810 21 N -0.285 5.285 22 N -0.378 5.378 23 C 0.420 3.580 24 N -0.567 5.567 25 C 0.098 3.902 26 C 0.084 3.916 27 O -0.240 6.240 28 C -0.054 4.054 29 C -0.135 4.135 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.270 0.730 34 H 0.408 0.592 35 H 0.427 0.573 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.069 0.931 44 H 0.160 0.840 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.761 -0.837 -35.613 35.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.154 3.846 3 H 0.042 0.958 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.169 4.169 7 N -0.571 5.571 8 Si 0.764 3.236 9 H -0.185 1.185 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.360 5.360 13 C 0.396 3.604 14 O -0.498 6.498 15 N -0.321 5.321 16 C 0.092 3.908 17 C -0.162 4.162 18 C -0.074 4.074 19 C -0.055 4.055 20 C -0.022 4.022 21 N -0.129 5.129 22 N -0.236 5.236 23 C 0.120 3.880 24 N -0.296 5.296 25 C -0.042 4.042 26 C -0.057 4.057 27 O -0.120 6.120 28 C -0.075 4.075 29 C -0.156 4.156 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.244 0.756 35 H 0.266 0.734 36 H 0.139 0.861 37 H 0.151 0.849 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.088 0.912 44 H 0.178 0.822 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.913 1.362 -35.187 35.265 hybrid contribution -0.543 -1.100 0.600 1.365 sum 1.370 0.262 -34.586 34.614 Atomic orbital electron populations 1.22367 0.97870 1.01781 0.99405 1.18676 0.91029 0.92957 0.81940 0.95786 1.21221 1.32367 1.13661 0.89720 0.92221 1.25504 0.96814 0.99193 0.95379 1.69966 1.46607 1.41880 0.98642 0.86046 0.79855 0.80514 0.77197 1.18545 1.22138 1.18725 1.45135 1.68854 1.14284 1.07681 1.16157 0.78285 0.84933 0.80990 1.90898 1.58018 1.16048 1.84818 1.42497 1.68497 1.12514 1.08615 1.17936 0.94916 0.92032 0.85944 1.21045 1.01324 0.95034 0.98752 1.20903 0.96715 1.00017 0.89726 1.17186 1.08440 0.94338 0.85519 1.24913 1.03144 0.91366 0.82771 1.74379 1.15990 1.10590 1.11957 1.74719 1.29546 1.23609 0.95741 1.23723 0.93556 0.82074 0.88675 1.45821 1.70839 1.18296 0.94596 1.22073 1.01917 0.84494 0.95708 1.22115 1.01448 0.83989 0.98146 1.84725 1.70110 1.40230 1.16977 1.21194 0.95264 0.91200 0.99824 1.21033 1.03171 1.02712 0.88652 0.94145 0.93616 0.91432 0.92066 0.75647 0.73372 0.86133 0.84911 0.90901 0.88867 0.89191 0.91174 0.86709 0.91225 0.82231 0.81038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.62 8.96 71.98 0.65 -5.97 16 2 C 0.26 11.96 2.15 44.24 0.10 12.05 16 3 H 0.02 1.25 6.63 -2.39 -0.02 1.24 16 4 C -0.53 -28.19 9.31 25.60 0.24 -27.96 16 5 H 0.06 3.34 7.98 -2.91 -0.02 3.32 16 6 C 0.03 1.73 5.45 84.65 0.46 2.19 16 7 N -0.93 -55.07 13.96 21.45 0.30 -54.77 16 8 Si 0.94 44.30 24.37 68.60 1.67 45.98 16 9 H -0.26 -11.53 6.87 99.48 0.68 -10.85 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 11 H -0.26 -12.41 6.53 99.48 0.65 -11.76 16 12 N -0.71 -26.11 5.07 -461.40 -2.34 -28.45 16 13 C 0.70 24.81 8.26 179.06 1.48 26.29 16 14 O -0.62 -27.22 13.69 -4.00 -0.05 -27.27 16 15 N -0.67 -16.81 5.34 -317.06 -1.69 -18.50 16 16 C 0.19 4.71 6.28 38.24 0.24 4.95 16 17 C -0.14 -4.18 8.63 22.35 0.19 -3.99 16 18 C -0.05 -1.45 9.69 22.51 0.22 -1.24 16 19 C -0.05 -1.25 5.87 -20.09 -0.12 -1.37 16 20 C 0.19 5.01 7.98 87.31 0.70 5.71 16 21 N -0.28 -8.71 11.89 -166.18 -1.98 -10.69 16 22 N -0.38 -10.62 11.30 -173.39 -1.96 -12.58 16 23 C 0.42 9.20 8.51 179.05 1.52 10.72 16 24 N -0.57 -7.20 3.37 -870.71 -2.93 -10.13 16 25 C 0.10 0.73 10.76 127.77 1.37 2.10 16 26 C 0.08 0.43 10.65 127.77 1.36 1.79 16 27 O -0.24 -5.39 10.16 -14.23 -0.14 -5.54 16 28 C -0.05 -0.98 9.72 22.51 0.22 -0.76 16 29 C -0.14 -2.34 9.94 22.35 0.22 -2.12 16 30 H 0.04 1.77 3.27 -2.39 -0.01 1.76 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.41 12.62 8.56 -92.71 -0.79 11.83 16 35 H 0.43 7.08 8.83 -92.71 -0.82 6.26 16 36 H 0.12 4.27 6.40 -2.91 -0.02 4.25 16 37 H 0.13 3.69 7.85 -2.91 -0.02 3.67 16 38 H 0.07 0.89 7.18 -2.39 -0.02 0.88 16 39 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.11 -0.10 8.07 -2.39 -0.02 -0.12 16 43 H 0.07 0.44 7.73 -2.39 -0.02 0.42 16 44 H 0.16 1.93 7.92 -2.91 -0.02 1.91 16 45 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -77.86 379.36 -0.91 -78.77 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.63 Total: 20.78 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 8.85 Total: 22.40 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -10.60 Total: -135.12 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.20 Total: -32.81 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.67 Total: 45.98 kcal Total: -77.86 -0.91 -78.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119078644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.586 kcal (2) G-P(sol) polarization free energy of solvation -77.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds