Wall clock time and date at job start Wed Apr 1 2020 04:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46649 * 2 1 4 4 C 1.52997 * 109.46990 * 119.99747 * 2 1 3 5 5 N 1.46494 * 109.47333 * 295.00164 * 4 2 1 6 6 C 1.46499 * 120.00056 * 270.00045 * 5 4 2 7 7 C 1.34780 * 119.99917 * 90.00293 * 5 4 2 8 8 O 1.21282 * 120.00129 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.99933 * 180.02562 * 7 5 4 10 10 C 1.50701 * 109.47242 * 179.97438 * 9 7 5 11 11 C 1.38299 * 119.93217 * 269.72899 * 10 9 7 12 12 C 1.38093 * 120.06953 * 179.72477 * 11 10 9 13 13 C 1.38883 * 119.92808 * 0.56550 * 12 11 10 14 14 O 1.35754 * 120.06438 * 179.68623 * 13 12 11 15 15 C 1.34826 * 116.99724 * 174.49160 * 14 13 12 16 16 H 1.07998 * 120.00100 * 5.04739 * 15 14 13 17 17 C 1.38654 * 119.99970 * 185.05457 * 15 14 13 18 18 N 1.31557 * 120.00012 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99959 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47263 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47148 * 119.99951 * 19 17 15 22 22 H 1.48504 * 109.47096 * 239.99883 * 19 17 15 23 23 C 1.38871 * 119.86468 * 359.70509 * 13 12 11 24 24 C 1.38101 * 119.93230 * 0.02562 * 23 13 12 25 25 C 1.50692 * 109.47175 * 239.99925 * 2 1 3 26 26 N 1.31070 * 126.66112 * 144.68236 * 25 2 1 27 27 N 1.28846 * 107.99484 * 179.89868 * 26 25 2 28 28 N 1.28740 * 109.39513 * 0.37670 * 27 26 25 29 29 N 1.29023 * 108.80721 * 359.76786 * 28 27 26 30 30 H 0.97003 * 126.43789 * 180.02562 * 29 28 27 31 31 H 1.09008 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47377 * 300.00049 * 1 2 3 33 33 H 1.09004 * 109.47431 * 60.00187 * 1 2 3 34 34 H 1.09001 * 109.47208 * 175.00190 * 4 2 1 35 35 H 1.09002 * 109.47056 * 55.00471 * 4 2 1 36 36 H 1.09004 * 109.47111 * 269.99873 * 6 5 4 37 37 H 1.08994 * 109.46958 * 29.99951 * 6 5 4 38 38 H 1.08996 * 109.47149 * 150.00111 * 6 5 4 39 39 H 1.09002 * 109.47056 * 59.99417 * 9 7 5 40 40 H 1.09001 * 109.46884 * 299.99904 * 9 7 5 41 41 H 1.08005 * 119.96050 * 359.97425 * 11 10 9 42 42 H 1.07999 * 120.03730 * 180.26989 * 12 11 10 43 43 H 0.97002 * 120.00021 * 179.97438 * 18 17 15 44 44 H 1.08002 * 120.03853 * 179.97438 * 23 13 12 45 45 H 1.07997 * 119.96732 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0354 2.4423 6 6 2.5427 1.0697 2.9751 7 6 0.4768 -0.2201 3.0499 8 8 -0.2605 -1.0761 2.6087 9 6 0.0778 0.5586 4.2769 10 6 -1.2694 0.0837 4.7573 11 6 -2.4216 0.6879 4.2883 12 6 -3.6577 0.2512 4.7222 13 6 -3.7426 -0.7881 5.6395 14 8 -4.9562 -1.2153 6.0728 15 6 -4.9731 -2.3001 6.8733 16 1 -4.0448 -2.7388 7.2080 17 6 -6.1825 -2.8525 7.2666 18 7 -7.3134 -2.3179 6.8592 19 14 -6.2060 -4.3560 8.3751 20 1 -4.8124 -4.7604 8.6904 21 1 -6.9236 -4.0315 9.6341 22 1 -6.9008 -5.4708 7.6825 23 6 -2.5836 -1.3890 6.1129 24 6 -1.3506 -0.9515 5.6709 25 6 2.0323 -0.7104 -1.2304 26 7 3.1020 -0.4099 -1.9256 27 7 3.1929 -1.2492 -2.8990 28 7 2.2045 -2.0725 -2.8473 29 7 1.4664 -1.7730 -1.8323 30 1 0.6560 -2.2284 -1.5548 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 3.1263 -0.7994 1.2057 35 1 1.6054 -1.7198 1.2951 36 1 3.2229 0.6247 3.7013 37 1 3.1178 1.5089 2.1601 38 1 1.9496 1.8449 3.4603 39 1 0.0227 1.6193 4.0321 40 1 0.8186 0.4048 5.0616 41 1 -2.3546 1.4995 3.5788 42 1 -4.5573 0.7206 4.3523 43 1 -8.1594 -2.7047 7.1340 44 1 -2.6464 -2.1972 6.8266 45 1 -0.4489 -1.4182 6.0389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273456443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:07 Heat of formation + Delta-G solvation = 77.834392 kcal Electronic energy + Delta-G solvation = -29230.197405 eV Core-core repulsion = 25058.496913 eV Total energy + Delta-G solvation = -4171.700492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.97 seconds Orbital eigenvalues (eV) -44.64528 -40.38171 -38.95208 -37.08862 -36.29426 -35.17307 -34.65556 -32.51914 -31.76681 -31.02689 -30.18646 -28.04968 -27.10984 -26.24975 -25.27684 -24.64475 -23.92770 -22.00957 -21.78686 -20.75325 -19.31579 -19.12358 -18.01180 -17.44239 -17.17990 -17.00224 -16.76718 -15.99674 -15.38744 -14.81091 -14.59768 -14.49708 -14.28299 -13.75153 -13.66150 -13.53489 -13.45213 -13.36635 -13.21696 -12.90406 -12.75045 -12.67127 -12.50948 -12.16606 -12.01791 -11.90851 -11.88913 -11.57917 -11.55417 -11.54244 -11.29678 -10.88509 -10.78052 -10.63507 -10.58356 -10.44175 -9.82825 -9.34828 -9.00484 -8.84632 -8.18668 -7.19572 -6.46919 -4.05481 0.79050 1.79191 1.92115 2.19651 2.22012 2.56339 2.73660 3.10696 3.12396 3.17752 3.54830 3.90981 3.94970 4.29399 4.32255 4.49694 4.63072 4.72421 4.81874 4.91617 4.99899 5.04672 5.07351 5.12638 5.16450 5.23899 5.26481 5.29407 5.33552 5.33960 5.50774 5.61194 5.68955 5.80301 5.82515 6.01824 6.13084 6.18765 6.38490 6.66482 6.87527 7.01594 7.10620 7.21155 7.33741 7.42574 7.80612 7.98373 8.08851 8.16298 8.98970 9.69116 10.71174 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.002076 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.805964 B =13484.736737 C =14261.009074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 H 0.116 0.884 4 C 0.124 3.876 5 N -0.624 5.624 6 C 0.075 3.925 7 C 0.511 3.489 8 O -0.513 6.513 9 C -0.078 4.078 10 C -0.172 4.172 11 C -0.059 4.059 12 C -0.192 4.192 13 C 0.157 3.843 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.232 4.232 24 C -0.056 4.056 25 C 0.206 3.794 26 N -0.301 5.301 27 N -0.071 5.071 28 N -0.088 5.088 29 N -0.400 5.400 30 H 0.459 0.541 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.371 6.649 -9.550 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.050 4.050 3 H 0.134 0.866 4 C -0.001 4.001 5 N -0.359 5.359 6 C -0.068 4.068 7 C 0.300 3.700 8 O -0.386 6.386 9 C -0.118 4.118 10 C -0.173 4.173 11 C -0.078 4.078 12 C -0.211 4.211 13 C 0.103 3.897 14 O -0.081 6.081 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.252 4.252 24 C -0.074 4.074 25 C -0.075 4.075 26 N -0.151 5.151 27 N -0.067 5.067 28 N -0.074 5.074 29 N -0.131 5.131 30 H 0.308 0.692 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 19.524 6.086 -10.910 23.178 hybrid contribution -1.050 -1.027 1.322 1.976 sum 18.474 5.059 -9.588 21.420 Atomic orbital electron populations 1.21956 0.91639 1.03584 1.03595 1.20345 0.97719 1.00131 0.86808 0.86649 1.21374 1.00292 0.95875 0.82583 1.47911 1.20487 1.39226 1.28318 1.21867 0.94307 0.90808 0.99774 1.21154 0.79880 0.83792 0.85184 1.90738 1.50583 1.32327 1.64985 1.20450 0.96934 0.99618 0.94779 1.18622 0.92330 1.02153 1.04208 1.20370 0.91433 0.98231 0.97746 1.20152 0.97528 1.00997 1.02409 1.19387 0.86151 0.92637 0.91540 1.83977 1.23557 1.42525 1.58066 1.21372 0.94434 1.04775 1.26104 0.89023 1.25294 0.94165 0.98990 0.98127 1.70047 0.97456 1.39601 1.42630 0.85650 0.78833 0.79887 0.79072 1.19112 1.20142 1.20135 1.21107 0.92033 1.05292 1.06724 1.20502 0.96411 0.94801 0.95712 1.26068 0.92179 0.89963 0.99255 1.75058 1.15718 1.20844 1.03473 1.78652 1.13607 0.99646 1.14746 1.78915 1.01448 1.21198 1.05863 1.46271 1.23649 1.23614 1.19551 0.69213 0.91626 0.89889 0.92189 0.89708 0.89400 0.92332 0.90869 0.90400 0.88894 0.88963 0.87477 0.86595 0.92073 0.85625 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 7.71 37.16 0.29 -0.83 16 2 C -0.03 -0.17 3.06 -91.78 -0.28 -0.46 16 3 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 4 C 0.12 0.86 4.98 -4.05 -0.02 0.84 16 5 N -0.62 -4.63 2.76 -181.58 -0.50 -5.14 16 6 C 0.08 0.32 10.24 59.85 0.61 0.93 16 7 C 0.51 5.63 6.25 -10.98 -0.07 5.56 16 8 O -0.51 -7.68 13.82 5.56 0.08 -7.60 16 9 C -0.08 -0.82 4.38 -29.03 -0.13 -0.95 16 10 C -0.17 -2.71 4.38 -104.57 -0.46 -3.16 16 11 C -0.06 -1.01 9.69 -39.61 -0.38 -1.39 16 12 C -0.19 -3.97 9.99 -39.40 -0.39 -4.36 16 13 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 14 O -0.18 -5.05 9.76 0.05 0.00 -5.05 16 15 C -0.39 -10.87 9.49 30.89 0.29 -10.57 16 16 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 17 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 19 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 C -0.23 -4.99 9.17 -39.40 -0.36 -5.35 16 24 C -0.06 -0.99 9.69 -39.61 -0.38 -1.38 16 25 C 0.21 1.69 7.11 -155.43 -1.10 0.59 16 26 N -0.30 -3.30 12.36 32.70 0.40 -2.89 16 27 N -0.07 -0.87 13.43 60.35 0.81 -0.06 16 28 N -0.09 -0.92 13.48 60.35 0.81 -0.11 16 29 N -0.40 -3.06 6.81 32.67 0.22 -2.84 16 30 H 0.46 2.16 8.27 -190.92 -1.58 0.58 16 31 H 0.06 0.52 7.37 -51.92 -0.38 0.13 16 32 H 0.08 0.77 6.06 -51.93 -0.31 0.45 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 35 H 0.09 0.74 7.42 -51.93 -0.39 0.35 16 36 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 37 H 0.07 0.21 8.07 -51.93 -0.42 -0.21 16 38 H 0.08 0.26 6.44 -51.93 -0.33 -0.07 16 39 H 0.09 0.75 7.34 -51.93 -0.38 0.37 16 40 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 41 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 42 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 45 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 380.10 15.07 5.73 5.73 Total: -1.00 -35.32 380.10 -6.33 -41.65 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.87 Total: 1.43 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.75 Total: -16.10 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 2.51 Total: -35.46 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.08 Total: -12.65 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.32 -6.33 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273456443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.481 kcal (2) G-P(sol) polarization free energy of solvation -35.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.97 seconds