Wall clock time and date at job start Wed Apr 1 2020 04:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46649 * 2 1 4 4 C 1.52997 * 109.46990 * 119.99747 * 2 1 3 5 5 N 1.46494 * 109.47333 * 295.00164 * 4 2 1 6 6 C 1.46499 * 120.00056 * 270.00045 * 5 4 2 7 7 C 1.34780 * 119.99917 * 90.00293 * 5 4 2 8 8 O 1.21282 * 120.00129 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.99933 * 180.02562 * 7 5 4 10 10 C 1.50701 * 109.47242 * 179.97438 * 9 7 5 11 11 C 1.38299 * 119.93217 * 269.72899 * 10 9 7 12 12 C 1.38093 * 120.06953 * 179.72477 * 11 10 9 13 13 C 1.38883 * 119.92808 * 0.56550 * 12 11 10 14 14 O 1.35754 * 120.06438 * 179.68623 * 13 12 11 15 15 C 1.34826 * 116.99724 * 174.49160 * 14 13 12 16 16 H 1.07998 * 120.00100 * 5.04739 * 15 14 13 17 17 C 1.38654 * 119.99970 * 185.05457 * 15 14 13 18 18 N 1.31557 * 120.00012 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99959 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47263 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47148 * 119.99951 * 19 17 15 22 22 H 1.48504 * 109.47096 * 239.99883 * 19 17 15 23 23 C 1.38871 * 119.86468 * 359.70509 * 13 12 11 24 24 C 1.38101 * 119.93230 * 0.02562 * 23 13 12 25 25 C 1.50692 * 109.47175 * 239.99925 * 2 1 3 26 26 N 1.31070 * 126.66112 * 144.68236 * 25 2 1 27 27 N 1.28846 * 107.99484 * 179.89868 * 26 25 2 28 28 N 1.28740 * 109.39513 * 0.37670 * 27 26 25 29 29 N 1.29023 * 108.80721 * 359.76786 * 28 27 26 30 30 H 0.97003 * 126.43789 * 180.02562 * 29 28 27 31 31 H 1.09008 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47377 * 300.00049 * 1 2 3 33 33 H 1.09004 * 109.47431 * 60.00187 * 1 2 3 34 34 H 1.09001 * 109.47208 * 175.00190 * 4 2 1 35 35 H 1.09002 * 109.47056 * 55.00471 * 4 2 1 36 36 H 1.09004 * 109.47111 * 269.99873 * 6 5 4 37 37 H 1.08994 * 109.46958 * 29.99951 * 6 5 4 38 38 H 1.08996 * 109.47149 * 150.00111 * 6 5 4 39 39 H 1.09002 * 109.47056 * 59.99417 * 9 7 5 40 40 H 1.09001 * 109.46884 * 299.99904 * 9 7 5 41 41 H 1.08005 * 119.96050 * 359.97425 * 11 10 9 42 42 H 1.07999 * 120.03730 * 180.26989 * 12 11 10 43 43 H 0.97002 * 120.00021 * 179.97438 * 18 17 15 44 44 H 1.08002 * 120.03853 * 179.97438 * 23 13 12 45 45 H 1.07997 * 119.96732 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0354 2.4423 6 6 2.5427 1.0697 2.9751 7 6 0.4768 -0.2201 3.0499 8 8 -0.2605 -1.0761 2.6087 9 6 0.0778 0.5586 4.2769 10 6 -1.2694 0.0837 4.7573 11 6 -2.4216 0.6879 4.2883 12 6 -3.6577 0.2512 4.7222 13 6 -3.7426 -0.7881 5.6395 14 8 -4.9562 -1.2153 6.0728 15 6 -4.9731 -2.3001 6.8733 16 1 -4.0448 -2.7388 7.2080 17 6 -6.1825 -2.8525 7.2666 18 7 -7.3134 -2.3179 6.8592 19 14 -6.2060 -4.3560 8.3751 20 1 -4.8124 -4.7604 8.6904 21 1 -6.9236 -4.0315 9.6341 22 1 -6.9008 -5.4708 7.6825 23 6 -2.5836 -1.3890 6.1129 24 6 -1.3506 -0.9515 5.6709 25 6 2.0323 -0.7104 -1.2304 26 7 3.1020 -0.4099 -1.9256 27 7 3.1929 -1.2492 -2.8990 28 7 2.2045 -2.0725 -2.8473 29 7 1.4664 -1.7730 -1.8323 30 1 0.6560 -2.2284 -1.5548 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 3.1263 -0.7994 1.2057 35 1 1.6054 -1.7198 1.2951 36 1 3.2229 0.6247 3.7013 37 1 3.1178 1.5089 2.1601 38 1 1.9496 1.8449 3.4603 39 1 0.0227 1.6193 4.0321 40 1 0.8186 0.4048 5.0616 41 1 -2.3546 1.4995 3.5788 42 1 -4.5573 0.7206 4.3523 43 1 -8.1594 -2.7047 7.1340 44 1 -2.6464 -2.1972 6.8266 45 1 -0.4489 -1.4182 6.0389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273456443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:02 Heat of formation + Delta-G solvation = 53.006172 kcal Electronic energy + Delta-G solvation = -29231.274038 eV Core-core repulsion = 25058.496913 eV Total energy + Delta-G solvation = -4172.777125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.48 seconds Orbital eigenvalues (eV) -45.39260 -41.26570 -40.52222 -38.38651 -37.37626 -35.89007 -35.34827 -34.37627 -32.92092 -31.95640 -31.73647 -28.87611 -27.94698 -27.33840 -26.72254 -25.51142 -24.69847 -23.60209 -22.69816 -21.95053 -20.13019 -19.82477 -19.78856 -18.80794 -18.18441 -17.90614 -17.42457 -16.85463 -16.45418 -16.32649 -15.95704 -15.63034 -15.48851 -15.29317 -14.97174 -14.54181 -14.33956 -14.20864 -14.12465 -13.90333 -13.87260 -13.57057 -13.54484 -13.04900 -12.97506 -12.89556 -12.68470 -12.65665 -12.56206 -12.46043 -12.29554 -12.23033 -12.21059 -12.11411 -12.03690 -11.32619 -11.15273 -10.85140 -10.66448 -9.72748 -9.61471 -8.86297 -8.47077 -6.14714 0.08413 0.65213 0.71064 1.01273 1.31379 1.33848 1.42176 1.52143 1.77004 2.06181 2.17342 2.83181 2.92046 3.18477 3.28335 3.55549 3.72222 3.77389 3.91238 4.01185 4.08572 4.13030 4.22492 4.28247 4.36861 4.45107 4.53764 4.55673 4.59612 4.63534 4.73897 4.75609 4.83416 4.88652 4.96338 5.10449 5.15806 5.16914 5.22862 5.34198 5.45436 5.56642 5.61873 5.74972 5.81978 6.04392 6.25809 6.45859 6.98028 7.31895 7.39549 7.80387 8.76575 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.002076 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.805964 B =13484.736737 C =14261.009074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.014 4.014 3 H 0.134 0.866 4 C 0.124 3.876 5 N -0.612 5.612 6 C 0.065 3.935 7 C 0.511 3.489 8 O -0.563 6.563 9 C -0.079 4.079 10 C -0.141 4.141 11 C -0.054 4.054 12 C -0.206 4.206 13 C 0.110 3.890 14 O -0.235 6.235 15 C -0.411 4.411 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.252 1.252 21 H -0.267 1.267 22 H -0.269 1.269 23 C -0.245 4.245 24 C -0.061 4.061 25 C 0.218 3.782 26 N -0.319 5.319 27 N -0.099 5.099 28 N -0.098 5.098 29 N -0.388 5.388 30 H 0.471 0.529 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.123 0.877 41 H 0.149 0.851 42 H 0.110 0.890 43 H 0.272 0.728 44 H 0.113 0.887 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.155 7.900 -9.617 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.037 4.037 3 H 0.152 0.848 4 C -0.001 4.001 5 N -0.345 5.345 6 C -0.077 4.077 7 C 0.301 3.699 8 O -0.441 6.441 9 C -0.118 4.118 10 C -0.142 4.142 11 C -0.072 4.072 12 C -0.225 4.225 13 C 0.060 3.940 14 O -0.142 6.142 15 C -0.487 4.487 16 H 0.117 0.883 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.176 1.176 21 H -0.192 1.192 22 H -0.195 1.195 23 C -0.264 4.264 24 C -0.079 4.079 25 C -0.063 4.063 26 N -0.169 5.169 27 N -0.094 5.094 28 N -0.085 5.085 29 N -0.121 5.121 30 H 0.322 0.678 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.167 0.833 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.131 0.869 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 23.399 7.382 -10.993 26.886 hybrid contribution -1.888 -1.196 1.167 2.521 sum 21.511 6.186 -9.826 24.445 Atomic orbital electron populations 1.21901 0.92212 1.03022 1.03335 1.20324 0.96937 1.00701 0.85697 0.84850 1.21397 1.01078 0.95127 0.82515 1.47850 1.19643 1.39275 1.27737 1.22198 0.94323 0.90272 1.00881 1.21097 0.80477 0.83173 0.85176 1.90753 1.52381 1.34530 1.66403 1.20587 0.94055 1.01556 0.95585 1.19252 0.94869 0.99241 1.00801 1.20860 0.90111 0.98804 0.97462 1.20450 0.99371 1.00530 1.02177 1.19961 0.85934 0.94508 0.93570 1.83936 1.26014 1.43909 1.60349 1.21826 0.95166 1.05254 1.26451 0.88320 1.26585 0.93431 1.02410 0.99807 1.70191 0.98238 1.42127 1.45448 0.84536 0.79533 0.75325 0.76841 1.17569 1.19156 1.19455 1.21210 0.93021 1.05255 1.06922 1.20917 0.95904 0.95246 0.95810 1.26275 0.91369 0.89533 0.99100 1.74996 1.16929 1.21206 1.03765 1.78643 1.14526 1.00477 1.15749 1.78864 1.01595 1.21273 1.06755 1.46263 1.23684 1.23386 1.18766 0.67770 0.92482 0.91004 0.91460 0.88047 0.91026 0.91235 0.89056 0.88774 0.85039 0.85865 0.83334 0.87188 0.91895 0.86886 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 7.71 71.98 0.56 -1.28 16 2 C -0.01 -0.13 3.06 -11.54 -0.04 -0.17 16 3 H 0.13 0.91 8.14 -2.39 -0.02 0.90 16 4 C 0.12 1.29 4.98 86.38 0.43 1.72 16 5 N -0.61 -6.25 2.76 -846.77 -2.34 -8.59 16 6 C 0.06 0.17 10.24 127.77 1.31 1.48 16 7 C 0.51 9.08 6.25 87.66 0.55 9.62 16 8 O -0.56 -15.43 13.82 -3.04 -0.04 -15.48 16 9 C -0.08 -1.21 4.38 29.10 0.13 -1.08 16 10 C -0.14 -3.92 4.38 -19.83 -0.09 -4.01 16 11 C -0.05 -1.71 9.69 22.25 0.22 -1.49 16 12 C -0.21 -8.72 9.99 22.39 0.22 -8.49 16 13 C 0.11 5.55 6.65 22.58 0.15 5.70 16 14 O -0.24 -14.38 9.76 -22.74 -0.22 -14.60 16 15 C -0.41 -24.31 9.49 67.92 0.64 -23.66 16 16 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 17 C -0.03 -1.45 5.49 84.83 0.47 -0.99 16 18 N -0.92 -57.17 13.67 21.61 0.30 -56.87 16 19 Si 1.02 43.40 29.55 68.60 2.03 45.43 16 20 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 23 C -0.24 -10.76 9.17 22.39 0.21 -10.56 16 24 C -0.06 -2.03 9.69 22.25 0.22 -1.81 16 25 C 0.22 3.10 7.11 138.13 0.98 4.08 16 26 N -0.32 -6.41 12.36 -50.46 -0.62 -7.04 16 27 N -0.10 -2.32 13.43 37.01 0.50 -1.82 16 28 N -0.10 -1.97 13.48 37.02 0.50 -1.47 16 29 N -0.39 -5.39 6.81 -50.55 -0.34 -5.73 16 30 H 0.47 3.84 8.27 -220.40 -1.82 2.01 16 31 H 0.06 0.81 7.37 -2.38 -0.02 0.80 16 32 H 0.07 1.11 6.06 -2.39 -0.01 1.10 16 33 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.10 0.78 8.07 -2.39 -0.02 0.76 16 35 H 0.07 1.04 7.42 -2.39 -0.02 1.02 16 36 H 0.07 0.11 8.14 -2.38 -0.02 0.09 16 37 H 0.09 -0.02 8.07 -2.39 -0.02 -0.04 16 38 H 0.09 -0.01 6.44 -2.39 -0.02 -0.03 16 39 H 0.13 1.14 7.34 -2.39 -0.02 1.12 16 40 H 0.12 1.28 8.05 -2.39 -0.02 1.26 16 41 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 42 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.11 5.12 5.64 -2.91 -0.02 5.11 16 45 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -85.32 380.10 4.93 -80.39 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.77 Total: 16.72 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 5.95 Total: -30.94 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -2.01 Total: -81.52 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.26 Total: -30.08 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -85.32 4.93 -80.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273456443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.399 kcal (2) G-P(sol) polarization free energy of solvation -85.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.49 seconds