Wall clock time and date at job start Wed Apr 1 2020 04:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47229 * 2 1 4 4 C 1.50707 * 109.47189 * 120.00246 * 2 1 3 5 5 H 1.07998 * 119.99959 * 119.99743 * 4 2 1 6 6 C 1.37874 * 119.99640 * 300.00166 * 4 2 1 7 7 N 1.31514 * 120.00230 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99915 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47343 * 179.97438 * 8 6 4 10 10 H 1.48510 * 109.46945 * 299.99366 * 8 6 4 11 11 H 1.48498 * 109.47645 * 59.99124 * 8 6 4 12 12 N 1.46503 * 109.47093 * 239.99707 * 2 1 3 13 13 C 1.46505 * 120.00315 * 300.00567 * 12 2 1 14 14 S 1.65604 * 119.99573 * 119.99966 * 12 2 1 15 15 O 1.42108 * 106.39948 * 203.54114 * 14 12 2 16 16 O 1.42098 * 106.40546 * 336.46317 * 14 12 2 17 17 N 1.65603 * 107.21580 * 90.00666 * 14 12 2 18 18 C 1.46497 * 120.00089 * 64.99681 * 17 14 12 19 19 C 1.50702 * 109.46819 * 165.00200 * 18 17 14 20 20 C 1.34375 * 126.53055 * 95.02877 * 19 18 17 21 21 N 1.34390 * 108.32154 * 179.97438 * 20 19 18 22 22 C 1.31195 * 109.30112 * 359.97438 * 21 20 19 23 23 N 1.38500 * 125.78920 * 179.97438 * 22 21 20 24 24 C 1.46899 * 111.00149 * 296.75931 * 23 22 21 25 25 C 1.46900 * 110.99943 * 60.71078 * 23 22 21 26 26 N 1.36025 * 108.42105 * 359.73717 * 22 21 20 27 27 C 1.46503 * 126.49610 * 180.29193 * 26 22 21 28 28 H 1.09004 * 109.46981 * 299.99984 * 1 2 3 29 29 H 1.09001 * 109.46717 * 59.99919 * 1 2 3 30 30 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 31 31 H 0.97003 * 119.99900 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47059 * 89.99446 * 13 12 2 33 33 H 1.08997 * 109.46826 * 209.99850 * 13 12 2 34 34 H 1.08997 * 109.46718 * 329.99761 * 13 12 2 35 35 H 0.96996 * 119.99860 * 244.99559 * 17 14 12 36 36 H 1.08997 * 109.46973 * 284.99756 * 18 17 14 37 37 H 1.08995 * 109.47318 * 45.00333 * 18 17 14 38 38 H 1.08004 * 125.84113 * 359.97438 * 20 19 18 39 39 H 1.09000 * 109.47296 * 59.99744 * 24 23 22 40 40 H 1.08999 * 109.47418 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.46925 * 299.99920 * 24 23 22 42 42 H 1.09003 * 109.47475 * 54.31133 * 25 23 22 43 43 H 1.08997 * 109.47550 * 174.31579 * 25 23 22 44 44 H 1.09001 * 109.47350 * 294.31180 * 25 23 22 45 45 H 1.09002 * 109.47003 * 265.38927 * 27 26 22 46 46 H 1.09002 * 109.46859 * 25.38690 * 27 26 22 47 47 H 1.09000 * 109.47069 * 145.38367 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 1.8279 -0.4194 5.2204 10 1 1.8279 -2.5200 4.0082 11 1 3.8075 -1.1192 4.0078 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4281 14 16 2.9704 0.1142 -2.2862 15 8 2.8228 -0.5646 -3.5259 16 8 2.6904 1.4973 -2.1193 17 7 4.5438 -0.1044 -1.8180 18 6 5.1357 -1.4442 -1.8416 19 6 6.6348 -1.3330 -1.7351 20 6 7.3655 -1.4190 -0.6107 21 7 8.6607 -1.2689 -0.9360 22 6 8.7647 -1.0918 -2.2317 23 7 9.9450 -0.9021 -2.9312 24 6 10.6114 0.3383 -2.5127 25 6 10.8391 -2.0575 -2.7781 26 7 7.5172 -1.1312 -2.7724 27 6 7.1767 -0.9834 -4.1897 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7095 1.1617 3.4844 32 1 0.7375 -2.1444 -1.9994 33 1 2.4628 -2.5819 -1.9864 34 1 1.5294 -2.5969 -0.4709 35 1 5.0734 0.6548 -1.5282 36 1 4.7539 -2.0248 -1.0018 37 1 4.8736 -1.9409 -2.7757 38 1 6.9780 -1.5811 0.3844 39 1 10.8404 0.2865 -1.4483 40 1 11.5351 0.4630 -3.0777 41 1 9.9530 1.1861 -2.7018 42 1 10.3108 -2.9665 -3.0657 43 1 11.7131 -1.9278 -3.4164 44 1 11.1571 -2.1357 -1.7384 45 1 6.9253 0.0569 -4.3963 46 1 8.0292 -1.2796 -4.8009 47 1 6.3223 -1.6176 -4.4261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283034051.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:48 Heat of formation + Delta-G solvation = 6.459152 kcal Electronic energy + Delta-G solvation = -29653.778804 eV Core-core repulsion = 25614.427200 eV Total energy + Delta-G solvation = -4039.351604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.17520 -37.40775 -36.75423 -36.18535 -35.32304 -35.06744 -33.95029 -32.62127 -29.59624 -29.11150 -27.94272 -27.11396 -25.80522 -25.49238 -25.19536 -23.99022 -20.89500 -20.73225 -19.87297 -18.93726 -17.53857 -17.19655 -16.79319 -16.46813 -16.24645 -15.93561 -15.53544 -15.11774 -14.68790 -14.53697 -14.28356 -13.89162 -13.67673 -13.45416 -13.28255 -12.94515 -12.93313 -12.74951 -12.64494 -12.49487 -12.33967 -12.05135 -12.02796 -11.84195 -11.63861 -11.54223 -11.41163 -11.23744 -10.99032 -10.87454 -10.46384 -10.25484 -10.20084 -10.08785 -9.64541 -9.45977 -9.22010 -9.13165 -8.49160 -8.40401 -8.00051 -6.10526 -4.19444 1.12160 1.81888 2.38132 2.93339 3.25965 3.32057 3.32705 3.52043 3.64809 4.08422 4.34832 4.47887 4.70060 4.70689 4.88287 5.01395 5.06492 5.07867 5.15107 5.18923 5.20389 5.31957 5.37368 5.44297 5.55261 5.58324 5.60082 5.75038 5.94232 6.02414 6.12459 6.29480 6.39617 6.42618 6.62882 6.69448 6.85037 6.85285 7.08499 7.16074 7.32417 7.47902 7.60195 7.76387 7.92725 8.02843 8.23697 8.82970 9.47165 10.94500 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012447 B = 0.003559 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.922946 B = 7866.581253 C = 9335.571931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.527 4.527 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.989 5.989 13 C 0.105 3.895 14 S 2.782 3.218 15 O -1.000 7.000 16 O -0.979 6.979 17 N -1.126 6.126 18 C 0.202 3.798 19 C -0.025 4.025 20 C 0.008 3.992 21 N -0.506 5.506 22 C 0.367 3.633 23 N -0.475 5.475 24 C 0.036 3.964 25 C 0.037 3.963 26 N -0.438 5.438 27 C 0.074 3.926 28 H 0.093 0.907 29 H 0.012 0.988 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.415 0.585 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.176 0.824 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.045 0.955 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.641 -5.663 -11.421 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.566 4.566 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.832 5.832 13 C -0.042 4.042 14 S 2.791 3.209 15 O -0.983 6.983 16 O -0.963 6.963 17 N -0.885 5.885 18 C 0.075 3.925 19 C -0.141 4.141 20 C -0.143 4.143 21 N -0.228 5.228 22 C 0.015 3.985 23 N -0.199 5.199 24 C -0.111 4.111 25 C -0.110 4.110 26 N -0.123 5.123 27 C -0.068 4.068 28 H 0.111 0.889 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.193 0.807 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.111 0.889 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.642 -5.164 -12.249 19.776 hybrid contribution 0.174 -0.375 1.586 1.640 sum 14.816 -5.540 -10.662 19.076 Atomic orbital electron populations 1.22059 0.97964 0.99672 1.00758 1.18733 0.91860 0.92742 0.80095 0.92370 1.21322 1.32016 1.13175 0.90117 0.91874 1.24920 0.94901 0.94946 0.99011 1.69870 1.36134 1.22544 1.23957 0.86593 0.79248 0.79628 0.82105 1.21307 1.20260 1.20154 1.57702 1.64276 1.21394 1.39817 1.21224 0.99005 0.82012 1.01943 1.01828 0.72530 0.73207 0.73361 1.93535 1.86032 1.76431 1.42303 1.93603 1.83459 1.32406 1.86830 1.56187 1.32290 1.14526 1.85504 1.19468 0.85374 0.84620 1.03084 1.21131 0.92650 1.12450 0.87849 1.22115 0.88189 1.05603 0.98429 1.70711 1.20859 1.20736 1.10529 1.20752 0.85002 1.05988 0.86764 1.58697 1.02313 1.05228 1.53674 1.22396 0.98836 0.89794 1.00120 1.22378 0.95694 0.91564 1.01398 1.45342 1.05950 1.52905 1.08098 1.22038 1.03086 1.03562 0.78162 0.88897 0.96926 0.94846 0.92565 0.93792 0.93329 0.90024 0.75181 0.88748 0.90230 0.80652 0.93500 0.90381 0.91275 0.91398 0.90426 0.93578 0.90549 0.88852 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.97 37.16 0.33 -3.05 16 2 C 0.27 6.37 2.62 -69.08 -0.18 6.19 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.53 -13.07 7.99 -34.44 -0.28 -13.34 16 5 H 0.06 1.49 7.33 -52.49 -0.38 1.11 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.10 11.32 55.43 0.63 -23.47 16 8 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 9 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 12 N -0.99 -19.50 3.12 -115.85 -0.36 -19.86 16 13 C 0.10 1.74 9.28 59.85 0.56 2.30 16 14 S 2.78 51.85 6.10 -107.50 -0.66 51.19 16 15 O -1.00 -19.09 16.68 -57.17 -0.95 -20.05 16 16 O -0.98 -21.80 16.70 -57.17 -0.95 -22.75 16 17 N -1.13 -17.10 6.05 -11.66 -0.07 -17.17 16 18 C 0.20 2.64 6.51 -5.19 -0.03 2.60 16 19 C -0.03 -0.33 6.36 -81.33 -0.52 -0.85 16 20 C 0.01 0.11 11.76 -17.80 -0.21 -0.10 16 21 N -0.51 -7.44 11.19 -13.92 -0.16 -7.59 16 22 C 0.37 4.73 6.31 -319.61 -2.02 2.71 16 23 N -0.47 -4.90 4.88 -190.48 -0.93 -5.83 16 24 C 0.04 0.32 9.51 60.06 0.57 0.89 16 25 C 0.04 0.31 9.50 60.06 0.57 0.88 16 26 N -0.44 -5.37 3.20 -120.30 -0.39 -5.75 16 27 C 0.07 0.70 10.94 59.85 0.65 1.35 16 28 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.03 0.72 7.67 -51.93 -0.40 0.33 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 34 H 0.08 1.38 7.02 -51.93 -0.36 1.02 16 35 H 0.42 6.09 8.64 -34.47 -0.30 5.80 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.08 0.96 7.10 -51.93 -0.37 0.59 16 38 H 0.18 2.31 8.06 -52.48 -0.42 1.89 16 39 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.73 8.02 -51.93 -0.42 0.32 16 47 H 0.09 0.75 7.47 -51.93 -0.39 0.37 16 LS Contribution 396.91 15.07 5.98 5.98 Total: -1.00 -32.43 396.91 -11.00 -43.43 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.48 Total: 5.64 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -0.64 Total: 1.17 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -1.28 Total: -79.67 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -1.91 Total: -42.80 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 51.85 SS G_CDS: -0.66 Total: 51.19 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.43 -11.00 -43.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283034051.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.891 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds