Wall clock time and date at job start Wed Apr 1 2020 04:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47229 * 2 1 4 4 C 1.50707 * 109.47189 * 120.00246 * 2 1 3 5 5 H 1.07998 * 119.99959 * 119.99743 * 4 2 1 6 6 C 1.37874 * 119.99640 * 300.00166 * 4 2 1 7 7 N 1.31514 * 120.00230 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99915 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47343 * 179.97438 * 8 6 4 10 10 H 1.48510 * 109.46945 * 299.99366 * 8 6 4 11 11 H 1.48498 * 109.47645 * 59.99124 * 8 6 4 12 12 N 1.46503 * 109.47093 * 239.99707 * 2 1 3 13 13 C 1.46505 * 120.00315 * 300.00567 * 12 2 1 14 14 S 1.65604 * 119.99573 * 119.99966 * 12 2 1 15 15 O 1.42108 * 106.39948 * 203.54114 * 14 12 2 16 16 O 1.42098 * 106.40546 * 336.46317 * 14 12 2 17 17 N 1.65603 * 107.21580 * 90.00666 * 14 12 2 18 18 C 1.46497 * 120.00089 * 64.99681 * 17 14 12 19 19 C 1.50702 * 109.46819 * 165.00200 * 18 17 14 20 20 C 1.34375 * 126.53055 * 95.02877 * 19 18 17 21 21 N 1.34390 * 108.32154 * 179.97438 * 20 19 18 22 22 C 1.31195 * 109.30112 * 359.97438 * 21 20 19 23 23 N 1.38500 * 125.78920 * 179.97438 * 22 21 20 24 24 C 1.46899 * 111.00149 * 296.75931 * 23 22 21 25 25 C 1.46900 * 110.99943 * 60.71078 * 23 22 21 26 26 N 1.36025 * 108.42105 * 359.73717 * 22 21 20 27 27 C 1.46503 * 126.49610 * 180.29193 * 26 22 21 28 28 H 1.09004 * 109.46981 * 299.99984 * 1 2 3 29 29 H 1.09001 * 109.46717 * 59.99919 * 1 2 3 30 30 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 31 31 H 0.97003 * 119.99900 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47059 * 89.99446 * 13 12 2 33 33 H 1.08997 * 109.46826 * 209.99850 * 13 12 2 34 34 H 1.08997 * 109.46718 * 329.99761 * 13 12 2 35 35 H 0.96996 * 119.99860 * 244.99559 * 17 14 12 36 36 H 1.08997 * 109.46973 * 284.99756 * 18 17 14 37 37 H 1.08995 * 109.47318 * 45.00333 * 18 17 14 38 38 H 1.08004 * 125.84113 * 359.97438 * 20 19 18 39 39 H 1.09000 * 109.47296 * 59.99744 * 24 23 22 40 40 H 1.08999 * 109.47418 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.46925 * 299.99920 * 24 23 22 42 42 H 1.09003 * 109.47475 * 54.31133 * 25 23 22 43 43 H 1.08997 * 109.47550 * 174.31579 * 25 23 22 44 44 H 1.09001 * 109.47350 * 294.31180 * 25 23 22 45 45 H 1.09002 * 109.47003 * 265.38927 * 27 26 22 46 46 H 1.09002 * 109.46859 * 25.38690 * 27 26 22 47 47 H 1.09000 * 109.47069 * 145.38367 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 1.8279 -0.4194 5.2204 10 1 1.8279 -2.5200 4.0082 11 1 3.8075 -1.1192 4.0078 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4281 14 16 2.9704 0.1142 -2.2862 15 8 2.8228 -0.5646 -3.5259 16 8 2.6904 1.4973 -2.1193 17 7 4.5438 -0.1044 -1.8180 18 6 5.1357 -1.4442 -1.8416 19 6 6.6348 -1.3330 -1.7351 20 6 7.3655 -1.4190 -0.6107 21 7 8.6607 -1.2689 -0.9360 22 6 8.7647 -1.0918 -2.2317 23 7 9.9450 -0.9021 -2.9312 24 6 10.6114 0.3383 -2.5127 25 6 10.8391 -2.0575 -2.7781 26 7 7.5172 -1.1312 -2.7724 27 6 7.1767 -0.9834 -4.1897 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7095 1.1617 3.4844 32 1 0.7375 -2.1444 -1.9994 33 1 2.4628 -2.5819 -1.9864 34 1 1.5294 -2.5969 -0.4709 35 1 5.0734 0.6548 -1.5282 36 1 4.7539 -2.0248 -1.0018 37 1 4.8736 -1.9409 -2.7757 38 1 6.9780 -1.5811 0.3844 39 1 10.8404 0.2865 -1.4483 40 1 11.5351 0.4630 -3.0777 41 1 9.9530 1.1861 -2.7018 42 1 10.3108 -2.9665 -3.0657 43 1 11.7131 -1.9278 -3.4164 44 1 11.1571 -2.1357 -1.7384 45 1 6.9253 0.0569 -4.3963 46 1 8.0292 -1.2796 -4.8009 47 1 6.3223 -1.6176 -4.4261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283034051.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:46 Heat of formation + Delta-G solvation = -16.578920 kcal Electronic energy + Delta-G solvation = -29654.777810 eV Core-core repulsion = 25614.427200 eV Total energy + Delta-G solvation = -4040.350610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.14504 -38.38938 -38.17651 -37.86103 -36.91332 -36.22805 -34.88602 -34.47408 -30.90020 -30.65195 -28.62514 -27.94078 -27.22691 -26.99752 -26.66609 -24.90119 -22.61106 -21.76830 -20.82550 -20.37357 -18.84061 -18.52305 -18.23951 -18.09447 -17.44791 -17.02275 -16.74027 -16.47658 -15.99939 -15.50659 -15.28803 -15.13541 -14.91575 -14.76438 -14.61156 -14.44651 -13.97727 -13.78436 -13.69432 -13.45546 -13.43236 -13.22683 -13.20516 -13.14481 -13.11428 -12.95203 -12.85847 -12.73632 -12.68798 -12.65381 -12.19623 -12.09232 -11.87036 -11.24863 -11.14264 -10.60762 -10.56931 -10.45336 -9.94941 -9.66964 -9.38615 -8.05772 -6.20188 -0.34579 0.80375 1.49815 1.50106 1.50947 1.57200 1.85599 2.12469 2.49026 2.63289 2.85549 3.23464 3.37774 3.54287 3.88235 3.93465 4.05497 4.09946 4.23391 4.33443 4.38459 4.47843 4.57520 4.61453 4.67763 4.74255 4.77188 4.82058 4.84497 4.88696 4.91907 4.99893 5.06730 5.10338 5.19026 5.31625 5.48535 5.64371 5.67172 5.68479 5.72500 5.86892 5.99948 6.15095 6.32225 6.40847 6.89524 6.93369 7.49750 8.98692 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012447 B = 0.003559 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.922946 B = 7866.581253 C = 9335.571931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.274 3.726 3 H 0.023 0.977 4 C -0.527 4.527 5 H 0.075 0.925 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.294 1.294 10 H -0.267 1.267 11 H -0.272 1.272 12 N -0.995 5.995 13 C 0.096 3.904 14 S 2.801 3.199 15 O -1.001 7.001 16 O -1.019 7.019 17 N -1.118 6.118 18 C 0.201 3.799 19 C -0.026 4.026 20 C -0.010 4.010 21 N -0.535 5.535 22 C 0.366 3.634 23 N -0.474 5.474 24 C 0.037 3.963 25 C 0.039 3.961 26 N -0.439 5.439 27 C 0.068 3.932 28 H 0.068 0.932 29 H 0.018 0.982 30 H 0.045 0.955 31 H 0.262 0.738 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.418 0.582 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.178 0.822 39 H 0.031 0.969 40 H 0.108 0.892 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.033 0.967 45 H 0.079 0.921 46 H 0.110 0.890 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.087 -7.357 -12.608 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.170 3.830 3 H 0.041 0.959 4 C -0.566 4.566 5 H 0.093 0.907 6 C -0.183 4.183 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.220 1.220 10 H -0.192 1.192 11 H -0.197 1.197 12 N -0.837 5.837 13 C -0.049 4.049 14 S 2.810 3.190 15 O -0.984 6.984 16 O -1.003 7.003 17 N -0.879 5.879 18 C 0.074 3.926 19 C -0.142 4.142 20 C -0.160 4.160 21 N -0.258 5.258 22 C 0.014 3.986 23 N -0.199 5.199 24 C -0.110 4.110 25 C -0.108 4.108 26 N -0.123 5.123 27 C -0.073 4.073 28 H 0.087 0.913 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.252 0.748 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.195 0.805 39 H 0.050 0.950 40 H 0.126 0.874 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.125 0.875 44 H 0.052 0.948 45 H 0.097 0.903 46 H 0.128 0.872 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.086 -6.887 -13.467 22.081 hybrid contribution -0.191 0.139 1.861 1.876 sum 15.895 -6.748 -11.607 20.806 Atomic orbital electron populations 1.21949 0.98006 1.00120 0.99846 1.18373 0.91845 0.91367 0.81458 0.95903 1.21634 1.31384 1.13153 0.90425 0.90672 1.25669 0.95239 0.95579 1.01842 1.70017 1.37628 1.24093 1.24251 0.85645 0.78752 0.78811 0.78589 1.21966 1.19226 1.19683 1.57579 1.64992 1.22613 1.38501 1.21464 1.00692 0.80332 1.02458 1.01124 0.72852 0.72001 0.73060 1.93527 1.86429 1.76207 1.42251 1.93548 1.84450 1.35029 1.87297 1.55900 1.30945 1.15771 1.85259 1.19644 0.85253 0.83356 1.04333 1.21044 0.92609 1.12611 0.87968 1.22284 0.88473 1.06269 0.99022 1.70690 1.21242 1.21990 1.11852 1.21137 0.86055 1.04843 0.86596 1.58909 1.01923 1.06209 1.52849 1.22442 0.99812 0.89006 0.99713 1.22442 0.96242 0.90851 1.01302 1.45512 1.05602 1.52232 1.08953 1.22267 1.04257 1.04033 0.76779 0.91341 0.96327 0.93593 0.92893 0.93048 0.90187 0.90272 0.74809 0.87963 0.88591 0.80501 0.94990 0.87387 0.91936 0.91666 0.87513 0.94835 0.90286 0.87168 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.56 8.97 71.98 0.65 -5.91 16 2 C 0.27 13.03 2.62 44.25 0.12 13.14 16 3 H 0.02 1.26 6.91 -2.39 -0.02 1.24 16 4 C -0.53 -25.82 7.99 25.60 0.20 -25.62 16 5 H 0.08 3.43 7.33 -2.91 -0.02 3.41 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -50.87 11.32 21.45 0.24 -50.62 16 8 Si 0.96 40.87 29.54 68.60 2.03 42.89 16 9 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 N -0.99 -38.14 3.12 -520.42 -1.62 -39.77 16 13 C 0.10 2.97 9.28 127.77 1.19 4.16 16 14 S 2.80 101.71 6.10 -56.49 -0.34 101.36 16 15 O -1.00 -36.17 16.68 -128.00 -2.14 -38.30 16 16 O -1.02 -45.80 16.70 -128.00 -2.14 -47.93 16 17 N -1.12 -32.56 6.05 -190.80 -1.15 -33.72 16 18 C 0.20 4.83 6.51 85.63 0.56 5.39 16 19 C -0.03 -0.65 6.36 40.76 0.26 -0.39 16 20 C -0.01 -0.27 11.76 83.42 0.98 0.71 16 21 N -0.53 -15.45 11.19 -197.94 -2.21 -17.67 16 22 C 0.37 8.99 6.31 260.37 1.64 10.63 16 23 N -0.47 -8.91 4.88 -756.54 -3.69 -12.60 16 24 C 0.04 0.61 9.51 127.69 1.21 1.82 16 25 C 0.04 0.58 9.50 127.69 1.21 1.79 16 26 N -0.44 -10.03 3.20 -534.52 -1.71 -11.74 16 27 C 0.07 1.12 10.94 127.77 1.40 2.52 16 28 H 0.07 3.57 6.07 -2.38 -0.01 3.56 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.04 1.98 7.67 -2.39 -0.02 1.96 16 31 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.95 7.79 -2.39 -0.02 1.93 16 34 H 0.08 2.50 7.02 -2.39 -0.02 2.48 16 35 H 0.42 12.02 8.64 -96.75 -0.84 11.18 16 36 H 0.10 2.33 8.14 -2.39 -0.02 2.32 16 37 H 0.10 2.02 7.10 -2.39 -0.02 2.00 16 38 H 0.18 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.03 0.61 8.12 -2.39 -0.02 0.59 16 40 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.01 8.11 -2.39 -0.02 0.99 16 43 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.11 1.44 8.02 -2.39 -0.02 1.42 16 47 H 0.09 1.41 7.47 -2.39 -0.02 1.39 16 Total: -1.00 -69.32 396.91 -2.74 -72.07 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.14 Total: 26.50 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 9.87 Total: 9.54 kcal Atomic # 7 Polarization: -155.97 SS G_CDS: -10.15 Total: -166.12 kcal Atomic # 8 Polarization: -81.96 SS G_CDS: -4.27 Total: -86.24 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: 101.71 SS G_CDS: -0.34 Total: 101.36 kcal Total: -69.32 -2.74 -72.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283034051.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.487 kcal (2) G-P(sol) polarization free energy of solvation -69.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds