Wall clock time and date at job start Wed Apr 1 2020 04:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46933 * 2 1 4 4 C 1.50697 * 109.47256 * 239.99902 * 2 1 3 5 5 H 1.08003 * 120.00178 * 239.99570 * 4 2 1 6 6 C 1.37878 * 120.00127 * 59.99867 * 4 2 1 7 7 N 1.31511 * 119.99829 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00107 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47083 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47214 * 119.99986 * 8 6 4 11 11 H 1.48502 * 109.47310 * 240.00329 * 8 6 4 12 12 N 1.46505 * 109.46855 * 119.99792 * 2 1 3 13 13 C 1.46496 * 120.00021 * 60.00599 * 12 2 1 14 14 S 1.65605 * 119.99925 * 239.99987 * 12 2 1 15 15 O 1.42101 * 106.40124 * 203.54128 * 14 12 2 16 16 O 1.42104 * 106.40057 * 336.46445 * 14 12 2 17 17 N 1.65600 * 107.21909 * 90.00084 * 14 12 2 18 18 C 1.46501 * 119.99844 * 64.99611 * 17 14 12 19 19 C 1.50695 * 109.47248 * 165.00020 * 18 17 14 20 20 C 1.34378 * 126.52527 * 95.02640 * 19 18 17 21 21 N 1.34390 * 108.32127 * 180.02562 * 20 19 18 22 22 C 1.31202 * 109.30352 * 359.97438 * 21 20 19 23 23 N 1.38491 * 125.79273 * 179.97438 * 22 21 20 24 24 C 1.46902 * 110.99847 * 296.75805 * 23 22 21 25 25 C 1.46902 * 111.00282 * 60.71267 * 23 22 21 26 26 N 1.36032 * 108.41762 * 359.74000 * 22 21 20 27 27 C 1.46496 * 126.49575 * 180.29008 * 26 22 21 28 28 H 1.08998 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47036 * 299.99771 * 1 2 3 30 30 H 1.08995 * 109.46689 * 60.00322 * 1 2 3 31 31 H 0.97005 * 119.99954 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47532 * 89.99879 * 13 12 2 33 33 H 1.08999 * 109.47157 * 209.99984 * 13 12 2 34 34 H 1.09001 * 109.47018 * 329.99358 * 13 12 2 35 35 H 0.96997 * 120.00396 * 245.00273 * 17 14 12 36 36 H 1.08999 * 109.47584 * 285.00799 * 18 17 14 37 37 H 1.09003 * 109.46707 * 45.00149 * 18 17 14 38 38 H 1.08000 * 125.84047 * 0.02562 * 20 19 18 39 39 H 1.08998 * 109.47349 * 60.00391 * 24 23 22 40 40 H 1.09003 * 109.46880 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.47488 * 299.99920 * 24 23 22 42 42 H 1.08999 * 109.46741 * 54.31563 * 25 23 22 43 43 H 1.08999 * 109.47038 * 174.31513 * 25 23 22 44 44 H 1.09001 * 109.46948 * 294.31840 * 25 23 22 45 45 H 1.09004 * 109.47246 * 265.38319 * 27 26 22 46 46 H 1.08997 * 109.47178 * 25.38780 * 27 26 22 47 47 H 1.09007 * 109.47174 * 145.38840 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1486 -2.2857 -3.6037 10 1 1.1680 -1.5867 -4.8164 11 1 3.1474 -0.1858 -4.8160 12 7 2.0183 -0.6906 1.1963 13 6 1.6645 -2.0932 1.4281 14 16 2.9704 0.1143 2.2863 15 8 3.7118 -0.8788 2.9816 16 8 3.5794 1.1831 1.5749 17 7 1.9607 0.8092 3.3999 18 6 1.1508 -0.0351 4.2817 19 6 0.6167 0.7950 5.4204 20 6 -0.5855 1.3924 5.4794 21 7 -0.6806 2.0350 6.6558 22 6 0.4265 1.8582 7.3374 23 7 0.6939 2.3716 8.5955 24 6 0.7148 3.8403 8.5711 25 6 -0.2735 1.8753 9.5833 26 7 1.2650 1.0805 6.6008 27 6 2.6054 0.6344 6.9887 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 0.7096 1.1617 -3.4845 32 1 2.4158 -2.7377 0.9718 33 1 1.6238 -2.2852 2.5002 34 1 0.6905 -2.3002 0.9847 35 1 1.9053 1.7751 3.4682 36 1 0.3188 -0.4566 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 -1.3454 1.3614 4.7126 39 1 -0.2551 4.2121 8.2409 40 1 0.9265 4.2173 9.5717 41 1 1.4882 4.1813 7.8828 42 1 -0.2910 0.7857 9.5590 43 1 0.0179 2.2119 10.5782 44 1 -1.2653 2.2599 9.3455 45 1 3.3483 1.3228 6.5857 46 1 2.6811 0.6138 8.0758 47 1 2.7843 -0.3655 6.5930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283034055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:52 Heat of formation + Delta-G solvation = 8.216055 kcal Electronic energy + Delta-G solvation = -29439.778443 eV Core-core repulsion = 25400.503024 eV Total energy + Delta-G solvation = -4039.275419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.26108 -37.47400 -36.73876 -36.20689 -35.29490 -35.15912 -34.02901 -32.59653 -29.68937 -29.11564 -27.99458 -27.18242 -25.87354 -25.58956 -25.13951 -24.07441 -20.96216 -20.75936 -19.94904 -18.89631 -17.60313 -17.27982 -16.85906 -16.54311 -16.28190 -15.87457 -15.57711 -15.12692 -14.75017 -14.55986 -14.32181 -13.99924 -13.76325 -13.50407 -13.27333 -13.02064 -12.99489 -12.82312 -12.70472 -12.55113 -12.39349 -12.10452 -12.06628 -11.78528 -11.62552 -11.52186 -11.38021 -11.25546 -10.99855 -10.81521 -10.49390 -10.29218 -10.26969 -10.04384 -9.72843 -9.48281 -9.24847 -9.19279 -8.49746 -8.46368 -8.00213 -6.08067 -4.14556 1.07192 1.74140 2.30777 2.84277 3.27354 3.35673 3.39405 3.51693 3.58370 4.06118 4.38653 4.39788 4.63589 4.64439 4.84458 4.96032 4.99718 5.02471 5.08464 5.14089 5.23515 5.25793 5.29579 5.36747 5.50014 5.53279 5.53915 5.64531 5.85786 5.93003 6.09343 6.32672 6.33812 6.34067 6.59267 6.60254 6.76184 6.78019 6.99904 7.07140 7.24577 7.45437 7.62505 7.78181 7.83731 8.03568 8.26659 8.87981 9.51400 10.97647 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.002692 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.822289 B =10398.314848 C =10815.828385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.989 5.989 13 C 0.108 3.892 14 S 2.779 3.221 15 O -0.997 6.997 16 O -0.971 6.971 17 N -1.132 6.132 18 C 0.201 3.799 19 C -0.026 4.026 20 C 0.006 3.994 21 N -0.506 5.506 22 C 0.369 3.631 23 N -0.475 5.475 24 C 0.036 3.964 25 C 0.037 3.963 26 N -0.437 5.437 27 C 0.073 3.927 28 H 0.034 0.966 29 H 0.012 0.988 30 H 0.093 0.907 31 H 0.263 0.737 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.414 0.586 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.175 0.825 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.046 0.954 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 0.456 22.115 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.787 3.213 15 O -0.980 6.980 16 O -0.955 6.955 17 N -0.891 5.891 18 C 0.073 3.927 19 C -0.142 4.142 20 C -0.145 4.145 21 N -0.228 5.228 22 C 0.017 3.983 23 N -0.199 5.199 24 C -0.111 4.111 25 C -0.110 4.110 26 N -0.122 5.122 27 C -0.069 4.069 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.192 0.808 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.112 0.888 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.717 0.645 22.431 22.506 hybrid contribution -0.169 -0.234 -1.349 1.379 sum -1.886 0.410 21.083 21.171 Atomic orbital electron populations 1.22120 0.98177 0.99728 1.00757 1.18750 0.91342 0.92987 0.80416 0.92338 1.21365 1.31526 1.12985 0.90018 0.91906 1.24911 0.94982 0.95015 0.99025 1.69868 1.36604 1.22687 1.23687 0.86445 0.78600 0.79657 0.82721 1.19751 1.20993 1.20926 1.57684 1.69987 1.19762 1.35743 1.21178 1.01920 0.82139 0.98621 1.01990 0.73648 0.73184 0.72443 1.93532 1.69119 1.60747 1.74640 1.93625 1.74241 1.55964 1.71702 1.56391 1.62335 1.17612 1.52728 1.19466 0.95495 0.90845 0.86857 1.21123 0.95488 1.08287 0.89321 1.22068 0.96594 0.99678 0.96201 1.70714 1.21770 1.23962 1.06391 1.20758 0.86984 0.98239 0.92316 1.58696 1.50404 1.09994 1.00848 1.22401 1.02001 0.83915 1.02828 1.22383 0.93683 1.00828 0.94145 1.45357 1.14780 1.38169 1.13883 1.22058 0.80607 1.01459 1.02808 0.94738 0.96881 0.88884 0.92747 0.93178 0.93459 0.90800 0.75267 0.89025 0.90044 0.80775 0.93506 0.90330 0.91255 0.91386 0.90372 0.93566 0.90467 0.88780 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.95 37.16 0.33 -2.91 16 2 C 0.27 6.37 2.62 -69.08 -0.18 6.19 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.52 -13.76 8.37 -34.44 -0.29 -14.05 16 5 H 0.06 1.66 7.65 -52.48 -0.40 1.26 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.55 11.32 55.43 0.63 -23.92 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.99 -19.52 3.12 -115.85 -0.36 -19.88 16 13 C 0.11 1.80 9.53 59.84 0.57 2.37 16 14 S 2.78 51.73 6.10 -107.50 -0.66 51.08 16 15 O -1.00 -19.35 16.68 -57.17 -0.95 -20.30 16 16 O -0.97 -22.11 16.70 -57.17 -0.95 -23.07 16 17 N -1.13 -15.94 6.05 -11.66 -0.07 -16.01 16 18 C 0.20 2.37 6.51 -5.20 -0.03 2.33 16 19 C -0.03 -0.31 6.36 -81.33 -0.52 -0.83 16 20 C 0.01 0.07 11.76 -17.79 -0.21 -0.14 16 21 N -0.51 -6.82 11.19 -13.92 -0.16 -6.98 16 22 C 0.37 4.41 6.31 -319.61 -2.02 2.40 16 23 N -0.48 -4.54 4.88 -190.47 -0.93 -5.47 16 24 C 0.04 0.30 9.51 60.07 0.57 0.87 16 25 C 0.04 0.29 9.50 60.07 0.57 0.86 16 26 N -0.44 -4.98 3.20 -120.30 -0.39 -5.36 16 27 C 0.07 0.65 10.94 59.84 0.65 1.30 16 28 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.63 7.79 -51.93 -0.40 0.23 16 34 H 0.07 1.19 6.43 -51.93 -0.33 0.85 16 35 H 0.41 5.54 8.64 -34.47 -0.30 5.25 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.91 7.10 -51.93 -0.37 0.54 16 38 H 0.18 1.91 8.06 -52.49 -0.42 1.48 16 39 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.69 8.02 -51.93 -0.42 0.27 16 47 H 0.09 0.72 7.48 -51.92 -0.39 0.33 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -33.70 396.23 -10.94 -44.64 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.41 Total: 3.36 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -0.64 Total: -0.03 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.28 Total: -77.62 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -1.91 Total: -43.37 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 51.73 SS G_CDS: -0.66 Total: 51.08 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.70 -10.94 -44.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283034055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.856 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds