Wall clock time and date at job start Wed Apr 1 2020 04:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46933 * 2 1 4 4 C 1.50697 * 109.47256 * 239.99902 * 2 1 3 5 5 H 1.08003 * 120.00178 * 239.99570 * 4 2 1 6 6 C 1.37878 * 120.00127 * 59.99867 * 4 2 1 7 7 N 1.31511 * 119.99829 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00107 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47083 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47214 * 119.99986 * 8 6 4 11 11 H 1.48502 * 109.47310 * 240.00329 * 8 6 4 12 12 N 1.46505 * 109.46855 * 119.99792 * 2 1 3 13 13 C 1.46496 * 120.00021 * 60.00599 * 12 2 1 14 14 S 1.65605 * 119.99925 * 239.99987 * 12 2 1 15 15 O 1.42101 * 106.40124 * 203.54128 * 14 12 2 16 16 O 1.42104 * 106.40057 * 336.46445 * 14 12 2 17 17 N 1.65600 * 107.21909 * 90.00084 * 14 12 2 18 18 C 1.46501 * 119.99844 * 64.99611 * 17 14 12 19 19 C 1.50695 * 109.47248 * 165.00020 * 18 17 14 20 20 C 1.34378 * 126.52527 * 95.02640 * 19 18 17 21 21 N 1.34390 * 108.32127 * 180.02562 * 20 19 18 22 22 C 1.31202 * 109.30352 * 359.97438 * 21 20 19 23 23 N 1.38491 * 125.79273 * 179.97438 * 22 21 20 24 24 C 1.46902 * 110.99847 * 296.75805 * 23 22 21 25 25 C 1.46902 * 111.00282 * 60.71267 * 23 22 21 26 26 N 1.36032 * 108.41762 * 359.74000 * 22 21 20 27 27 C 1.46496 * 126.49575 * 180.29008 * 26 22 21 28 28 H 1.08998 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47036 * 299.99771 * 1 2 3 30 30 H 1.08995 * 109.46689 * 60.00322 * 1 2 3 31 31 H 0.97005 * 119.99954 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47532 * 89.99879 * 13 12 2 33 33 H 1.08999 * 109.47157 * 209.99984 * 13 12 2 34 34 H 1.09001 * 109.47018 * 329.99358 * 13 12 2 35 35 H 0.96997 * 120.00396 * 245.00273 * 17 14 12 36 36 H 1.08999 * 109.47584 * 285.00799 * 18 17 14 37 37 H 1.09003 * 109.46707 * 45.00149 * 18 17 14 38 38 H 1.08000 * 125.84047 * 0.02562 * 20 19 18 39 39 H 1.08998 * 109.47349 * 60.00391 * 24 23 22 40 40 H 1.09003 * 109.46880 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.47488 * 299.99920 * 24 23 22 42 42 H 1.08999 * 109.46741 * 54.31563 * 25 23 22 43 43 H 1.08999 * 109.47038 * 174.31513 * 25 23 22 44 44 H 1.09001 * 109.46948 * 294.31840 * 25 23 22 45 45 H 1.09004 * 109.47246 * 265.38319 * 27 26 22 46 46 H 1.08997 * 109.47178 * 25.38780 * 27 26 22 47 47 H 1.09007 * 109.47174 * 145.38840 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1486 -2.2857 -3.6037 10 1 1.1680 -1.5867 -4.8164 11 1 3.1474 -0.1858 -4.8160 12 7 2.0183 -0.6906 1.1963 13 6 1.6645 -2.0932 1.4281 14 16 2.9704 0.1143 2.2863 15 8 3.7118 -0.8788 2.9816 16 8 3.5794 1.1831 1.5749 17 7 1.9607 0.8092 3.3999 18 6 1.1508 -0.0351 4.2817 19 6 0.6167 0.7950 5.4204 20 6 -0.5855 1.3924 5.4794 21 7 -0.6806 2.0350 6.6558 22 6 0.4265 1.8582 7.3374 23 7 0.6939 2.3716 8.5955 24 6 0.7148 3.8403 8.5711 25 6 -0.2735 1.8753 9.5833 26 7 1.2650 1.0805 6.6008 27 6 2.6054 0.6344 6.9887 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 0.7096 1.1617 -3.4845 32 1 2.4158 -2.7377 0.9718 33 1 1.6238 -2.2852 2.5002 34 1 0.6905 -2.3002 0.9847 35 1 1.9053 1.7751 3.4682 36 1 0.3188 -0.4566 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 -1.3454 1.3614 4.7126 39 1 -0.2551 4.2121 8.2409 40 1 0.9265 4.2173 9.5717 41 1 1.4882 4.1813 7.8828 42 1 -0.2910 0.7857 9.5590 43 1 0.0179 2.2119 10.5782 44 1 -1.2653 2.2599 9.3455 45 1 3.3483 1.3228 6.5857 46 1 2.6811 0.6138 8.0758 47 1 2.7843 -0.3655 6.5930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283034055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:51 Heat of formation + Delta-G solvation = -16.233596 kcal Electronic energy + Delta-G solvation = -29440.838660 eV Core-core repulsion = 25400.503024 eV Total energy + Delta-G solvation = -4040.335635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.13700 -38.38304 -38.17462 -37.87080 -36.89709 -36.24768 -34.88380 -34.50602 -30.88663 -30.65181 -28.61809 -27.94332 -27.25531 -27.00758 -26.66733 -24.89692 -22.59445 -21.75653 -20.81964 -20.31657 -18.89674 -18.56057 -18.41572 -17.96299 -17.41108 -17.01730 -16.74152 -16.47266 -16.02254 -15.50737 -15.29189 -15.12894 -14.97430 -14.76024 -14.62291 -14.48802 -13.96966 -13.79070 -13.72308 -13.45636 -13.38540 -13.21990 -13.17416 -13.14226 -13.11109 -12.97708 -12.84804 -12.76818 -12.73078 -12.55785 -12.19934 -12.11958 -11.88076 -11.20537 -11.10627 -10.61874 -10.60569 -10.48533 -9.93675 -9.67171 -9.37673 -8.10164 -6.23223 -0.38053 0.81219 1.41895 1.45166 1.50953 1.55177 1.87561 2.14901 2.44676 2.64913 2.86309 3.18458 3.37278 3.54636 3.88617 3.93629 4.06314 4.07939 4.23711 4.33128 4.38788 4.45996 4.58002 4.61683 4.67450 4.71877 4.75828 4.81459 4.87981 4.89381 4.92608 5.04989 5.09481 5.11126 5.19576 5.24884 5.49313 5.64655 5.67928 5.71576 5.73608 5.90762 5.98572 6.19074 6.33648 6.41323 6.85060 6.94298 7.45809 8.93962 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.002692 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.822289 B =10398.314848 C =10815.828385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.536 4.536 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.954 3.046 9 H -0.270 1.270 10 H -0.275 1.275 11 H -0.286 1.286 12 N -0.995 5.995 13 C 0.100 3.900 14 S 2.798 3.202 15 O -1.004 7.004 16 O -1.018 7.018 17 N -1.118 6.118 18 C 0.198 3.802 19 C -0.029 4.029 20 C -0.006 4.006 21 N -0.534 5.534 22 C 0.366 3.634 23 N -0.476 5.476 24 C 0.038 3.962 25 C 0.039 3.961 26 N -0.440 5.440 27 C 0.068 3.932 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.263 0.737 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.419 0.581 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.185 0.815 39 H 0.033 0.967 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.034 0.966 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -0.561 23.771 23.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.169 3.831 3 H 0.041 0.959 4 C -0.575 4.575 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.837 5.837 13 C -0.046 4.046 14 S 2.808 3.192 15 O -0.987 6.987 16 O -1.002 7.002 17 N -0.880 5.880 18 C 0.072 3.928 19 C -0.145 4.145 20 C -0.157 4.157 21 N -0.257 5.257 22 C 0.014 3.986 23 N -0.201 5.201 24 C -0.109 4.109 25 C -0.108 4.108 26 N -0.124 5.124 27 C -0.074 4.074 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.254 0.746 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.202 0.798 39 H 0.051 0.949 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.053 0.947 45 H 0.096 0.904 46 H 0.127 0.873 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.870 -0.400 24.099 24.175 hybrid contribution -0.113 0.103 -1.720 1.727 sum -1.982 -0.297 22.379 22.469 Atomic orbital electron populations 1.21914 0.96624 1.00409 1.00613 1.18397 0.92383 0.91240 0.81116 0.95861 1.21693 1.31418 1.12924 0.91490 0.92530 1.25623 0.95305 0.95730 1.01640 1.69985 1.37426 1.23697 1.24204 0.85577 0.78247 0.78591 0.79623 1.19407 1.20046 1.21207 1.57546 1.69976 1.21086 1.35089 1.21414 1.01886 0.80167 1.01108 1.01187 0.73505 0.72284 0.72268 1.93516 1.69625 1.61009 1.74550 1.93560 1.75816 1.57584 1.73237 1.55970 1.62124 1.18023 1.51863 1.19699 0.95898 0.90590 0.86626 1.21069 0.95413 1.08502 0.89566 1.22350 0.97291 0.99713 0.96378 1.70708 1.22953 1.24959 1.07094 1.21125 0.86738 0.97800 0.92961 1.58886 1.50650 1.10564 0.99975 1.22437 1.00991 0.83195 1.04316 1.22437 0.92840 1.00631 0.94901 1.45533 1.15417 1.37836 1.13614 1.22250 0.79400 1.01763 1.03953 0.93542 0.94210 0.91781 0.92724 0.94122 0.89745 0.90112 0.74635 0.87269 0.88890 0.79829 0.94864 0.87532 0.91960 0.91690 0.87648 0.94719 0.90378 0.87253 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.85 8.95 71.98 0.64 -5.20 16 2 C 0.27 13.01 2.62 44.24 0.12 13.13 16 3 H 0.02 1.28 6.91 -2.39 -0.02 1.27 16 4 C -0.54 -28.54 8.37 25.60 0.21 -28.33 16 5 H 0.06 3.01 7.65 -2.91 -0.02 2.98 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.91 -51.04 11.32 21.45 0.24 -50.79 16 8 Si 0.95 43.08 29.54 68.60 2.03 45.10 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 N -0.99 -38.35 3.12 -520.45 -1.62 -39.98 16 13 C 0.10 3.12 9.53 127.77 1.22 4.34 16 14 S 2.80 102.00 6.10 -56.49 -0.34 101.65 16 15 O -1.00 -37.35 16.68 -128.00 -2.14 -39.48 16 16 O -1.02 -47.02 16.70 -128.00 -2.14 -49.15 16 17 N -1.12 -29.83 6.05 -190.79 -1.15 -30.98 16 18 C 0.20 4.19 6.51 85.63 0.56 4.75 16 19 C -0.03 -0.64 6.36 40.76 0.26 -0.39 16 20 C -0.01 -0.16 11.76 83.42 0.98 0.83 16 21 N -0.53 -13.99 11.19 -197.94 -2.21 -16.20 16 22 C 0.37 8.30 6.31 260.37 1.64 9.94 16 23 N -0.48 -8.31 4.88 -756.52 -3.69 -12.00 16 24 C 0.04 0.56 9.51 127.69 1.21 1.78 16 25 C 0.04 0.53 9.50 127.69 1.21 1.75 16 26 N -0.44 -9.28 3.20 -534.53 -1.71 -10.99 16 27 C 0.07 1.06 10.94 127.77 1.40 2.46 16 28 H 0.05 1.84 6.66 -2.39 -0.02 1.82 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 30 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 31 H 0.26 14.00 8.31 -92.70 -0.77 13.22 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.99 7.79 -2.39 -0.02 1.97 16 34 H 0.08 2.41 6.43 -2.39 -0.02 2.40 16 35 H 0.42 10.81 8.64 -96.75 -0.84 9.97 16 36 H 0.11 1.97 8.14 -2.39 -0.02 1.96 16 37 H 0.09 1.79 7.10 -2.39 -0.02 1.77 16 38 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 39 H 0.03 0.59 8.12 -2.39 -0.02 0.57 16 40 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 0.92 8.11 -2.39 -0.02 0.91 16 43 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.11 1.36 8.02 -2.39 -0.02 1.34 16 47 H 0.09 1.33 7.48 -2.38 -0.02 1.32 16 Total: -1.00 -72.75 396.23 -2.70 -75.45 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.14 Total: 20.98 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 9.91 Total: 6.40 kcal Atomic # 7 Polarization: -150.80 SS G_CDS: -10.15 Total: -160.95 kcal Atomic # 8 Polarization: -84.36 SS G_CDS: -4.27 Total: -88.64 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 102.00 SS G_CDS: -0.34 Total: 101.65 kcal Total: -72.75 -2.70 -75.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283034055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.214 kcal (2) G-P(sol) polarization free energy of solvation -72.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds