Wall clock time and date at job start Wed Apr 1 2020 04:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46955 * 2 1 4 4 C 1.50697 * 109.47182 * 240.00496 * 2 1 3 5 5 H 1.08002 * 119.99906 * 240.00447 * 4 2 1 6 6 C 1.37881 * 120.00191 * 59.99878 * 4 2 1 7 7 N 1.31517 * 119.99829 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00036 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47196 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46915 * 119.99902 * 8 6 4 11 11 H 1.48493 * 109.47219 * 239.99944 * 8 6 4 12 12 N 1.46495 * 109.47313 * 120.00198 * 2 1 3 13 13 C 1.46503 * 119.99496 * 59.99777 * 12 2 1 14 14 C 1.34773 * 120.00358 * 240.00074 * 12 2 1 15 15 O 1.21282 * 119.99884 * 5.76567 * 14 12 2 16 16 C 1.50706 * 120.00160 * 185.76268 * 14 12 2 17 17 H 1.08995 * 110.62366 * 328.04696 * 16 14 12 18 18 C 1.55143 * 110.70318 * 91.15208 * 16 14 12 19 19 C 1.54902 * 101.68308 * 154.19483 * 18 16 14 20 20 N 1.47889 * 104.77691 * 322.97726 * 19 18 16 21 21 C 1.39335 * 111.01377 * 146.33371 * 20 19 18 22 22 C 1.39105 * 119.93294 * 299.12130 * 21 20 19 23 23 C 1.37686 * 120.10217 * 179.97438 * 22 21 20 24 24 C 1.39788 * 119.96820 * 0.02580 * 23 22 21 25 25 C 1.43192 * 120.07237 * 179.97438 * 24 23 22 26 26 N 9.72977 * 135.32339 * 191.79848 * 14 1 2 27 27 C 1.39825 * 119.85679 * 359.97438 * 24 23 22 28 28 C 1.37833 * 119.89531 * 359.72677 * 27 24 23 29 29 F 1.35102 * 119.98135 * 180.27075 * 28 27 24 30 30 C 1.47448 * 108.58335 * 24.04319 * 20 19 18 31 31 H 1.09000 * 109.47412 * 300.00043 * 1 2 3 32 32 H 1.09002 * 109.47261 * 59.99654 * 1 2 3 33 33 H 1.08996 * 109.47340 * 179.97438 * 1 2 3 34 34 H 0.96999 * 119.99416 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47184 * 264.69234 * 13 12 2 36 36 H 1.08991 * 109.47610 * 24.69999 * 13 12 2 37 37 H 1.09004 * 109.46693 * 144.70067 * 13 12 2 38 38 H 1.08994 * 110.98802 * 272.30111 * 18 16 14 39 39 H 1.09001 * 110.98818 * 36.08053 * 18 16 14 40 40 H 1.08990 * 110.37843 * 81.77729 * 19 18 16 41 41 H 1.09002 * 110.37094 * 204.12128 * 19 18 16 42 42 H 1.07997 * 119.94513 * 359.97438 * 22 21 20 43 43 H 1.08009 * 120.01329 * 179.97438 * 23 22 21 44 44 H 1.07995 * 120.04852 * 180.02562 * 27 24 23 45 45 H 1.08997 * 109.88527 * 239.63323 * 30 20 19 46 46 H 1.09004 * 109.88480 * 118.44871 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2875 -3.6039 10 1 1.1660 -1.5864 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0932 1.4278 14 6 2.7932 -0.0357 2.0833 15 8 3.0003 1.1515 1.9472 16 6 3.4022 -0.7786 3.2445 17 1 2.7490 -1.5896 3.5665 18 6 4.8074 -1.3208 2.8725 19 6 5.4875 -1.4086 4.2614 20 7 4.9883 -0.2294 5.0011 21 6 4.8533 -0.5116 6.3589 22 6 3.9854 -1.5154 6.7762 23 6 3.8497 -1.7976 8.1170 24 6 4.5846 -1.0741 9.0607 25 6 4.4447 -1.3653 10.4557 26 7 4.3349 -1.5973 11.5624 27 6 5.4565 -0.0654 8.6395 28 6 5.5925 0.2081 7.2955 29 9 6.4386 1.1786 6.8863 30 6 3.6987 0.1811 4.4159 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 0.7095 1.1620 -3.4844 35 1 0.7909 -2.1449 2.0779 36 1 1.4376 -2.5728 0.4757 37 1 2.5013 -2.6055 1.9025 38 1 4.7361 -2.3050 2.4097 39 1 5.3355 -0.6232 2.2224 40 1 5.1947 -2.3271 4.7700 41 1 6.5715 -1.3608 4.1568 42 1 3.4172 -2.0742 6.0474 43 1 3.1751 -2.5770 8.4395 44 1 6.0261 0.4952 9.3659 45 1 3.7675 1.2049 4.0483 46 1 2.9108 0.1061 5.1654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286034119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:11 Heat of formation + Delta-G solvation = -5.479206 kcal Electronic energy + Delta-G solvation = -29719.514387 eV Core-core repulsion = 25524.281184 eV Total energy + Delta-G solvation = -4195.233203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.06540 -40.82824 -39.41611 -38.04998 -36.59266 -35.37694 -33.29362 -32.61513 -31.29340 -29.99761 -29.19338 -28.82695 -26.18580 -25.27066 -24.56648 -23.30125 -22.68800 -21.41104 -20.41416 -19.69807 -18.31413 -17.54183 -17.24994 -16.85703 -16.42974 -16.29075 -15.87871 -15.52432 -14.85991 -14.67448 -14.49126 -14.43708 -14.33143 -14.15471 -13.82163 -13.63006 -13.40248 -13.23610 -13.01438 -12.64755 -12.56563 -12.43572 -12.33344 -12.16126 -11.85779 -11.64580 -11.60312 -11.55443 -11.24445 -11.10000 -10.89197 -10.82691 -10.69735 -10.28299 -10.22446 -9.52189 -9.23931 -9.11368 -9.00549 -8.75489 -8.47360 -7.65523 -6.12056 -4.20444 0.06045 0.63504 2.16859 2.31849 3.19083 3.20477 3.22208 3.24082 3.30899 3.32952 3.42490 3.84969 3.92579 4.24111 4.34434 4.41229 4.44041 4.61864 4.66497 4.85880 4.96966 5.08339 5.15806 5.19268 5.24818 5.28311 5.43435 5.46509 5.58226 5.60423 5.62364 5.76351 5.82031 5.92249 6.05847 6.08243 6.17578 6.29113 6.49970 6.71266 6.79111 6.93520 6.99231 7.02312 7.36830 7.48407 7.66940 7.96929 8.14786 8.46846 8.77546 8.98338 9.46335 10.93206 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.002207 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.544213 B =12681.380754 C =12962.242483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.591 5.591 13 C 0.083 3.917 14 C 0.515 3.485 15 O -0.547 6.547 16 C -0.133 4.133 17 H 0.093 0.907 18 C -0.112 4.112 19 C 0.049 3.951 20 N -0.496 5.496 21 C 0.090 3.910 22 C -0.124 4.124 23 C -0.070 4.070 24 C -0.008 4.008 25 C 0.256 3.744 26 N -0.410 5.410 27 C -0.103 4.103 28 C 0.126 3.874 29 F -0.117 7.117 30 C 0.060 3.940 31 H 0.011 0.989 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.148 0.852 45 H 0.109 0.891 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.357 -7.984 18.775 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.322 5.322 13 C -0.061 4.061 14 C 0.301 3.699 15 O -0.425 6.425 16 C -0.155 4.155 17 H 0.111 0.889 18 C -0.150 4.150 19 C -0.076 4.076 20 N -0.217 5.217 21 C -0.007 4.007 22 C -0.144 4.144 23 C -0.091 4.091 24 C -0.012 4.012 25 C -0.059 4.059 26 N -0.085 5.085 27 C -0.125 4.125 28 C 0.105 3.895 29 F -0.096 7.096 30 C -0.066 4.066 31 H 0.030 0.970 32 H 0.111 0.889 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.166 0.834 45 H 0.127 0.873 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.580 -7.147 20.163 22.381 hybrid contribution -0.187 -0.977 -1.341 1.670 sum 6.393 -8.123 18.821 21.473 Atomic orbital electron populations 1.22077 0.98208 0.99335 1.00824 1.18955 0.90947 0.94506 0.79837 0.91923 1.21340 1.31870 1.13037 0.90248 0.92197 1.24908 0.94940 0.94987 0.99017 1.69892 1.36276 1.22528 1.23708 0.86442 0.78595 0.79569 0.82779 1.19823 1.20954 1.20891 1.48222 1.48750 1.11625 1.23562 1.21607 0.98591 0.83414 1.02447 1.19943 0.79320 0.87374 0.83301 1.90655 1.61256 1.15265 1.75331 1.22556 0.98258 0.98969 0.95755 0.88875 1.22650 0.93285 1.02378 0.96698 1.23234 1.01082 0.90163 0.93151 1.61135 1.27755 1.34274 0.98536 1.19321 0.95521 0.94607 0.91218 1.21625 0.98864 0.97664 0.96285 1.21098 0.97696 0.98518 0.91793 1.15701 1.01002 0.99242 0.85221 1.25502 0.93989 0.93956 0.92475 1.81293 1.07793 1.07820 1.11602 1.21060 0.99070 0.97822 0.94567 1.17253 0.92015 0.89193 0.90993 1.91571 1.67613 1.59426 1.90943 1.22966 0.87509 1.01675 0.94419 0.97014 0.88865 0.95225 0.92693 0.94037 0.89857 0.92996 0.89661 0.89341 0.92486 0.89251 0.83895 0.84177 0.83385 0.87303 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.97 37.16 0.33 -3.05 16 2 C 0.26 6.31 2.62 -69.09 -0.18 6.13 16 3 H 0.06 1.81 6.92 -51.93 -0.36 1.45 16 4 C -0.53 -13.62 7.95 -34.44 -0.27 -13.90 16 5 H 0.06 1.52 7.42 -52.49 -0.39 1.13 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.50 11.32 55.43 0.63 -23.87 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 N -0.59 -11.67 2.75 -175.27 -0.48 -12.16 16 13 C 0.08 1.25 8.79 59.85 0.53 1.78 16 14 C 0.51 9.71 6.83 -10.98 -0.08 9.64 16 15 O -0.55 -12.68 14.97 5.56 0.08 -12.59 16 16 C -0.13 -1.70 2.38 -89.95 -0.21 -1.92 16 17 H 0.09 0.95 6.67 -51.93 -0.35 0.61 16 18 C -0.11 -1.27 6.41 -24.59 -0.16 -1.42 16 19 C 0.05 0.45 6.55 -2.28 -0.01 0.44 16 20 N -0.50 -5.41 4.98 -167.80 -0.84 -6.25 16 21 C 0.09 0.81 4.64 -83.72 -0.39 0.42 16 22 C -0.12 -0.81 7.77 -39.46 -0.31 -1.12 16 23 C -0.07 -0.39 9.74 -39.20 -0.38 -0.77 16 24 C -0.01 -0.05 5.74 -106.80 -0.61 -0.67 16 25 C 0.26 2.09 15.33 -22.48 -0.34 1.75 16 26 N -0.41 -4.34 18.54 41.84 0.78 -3.57 16 27 C -0.10 -0.71 9.72 -39.14 -0.38 -1.09 16 28 C 0.13 1.13 7.30 -39.32 -0.29 0.84 16 29 F -0.12 -1.30 17.07 2.25 0.04 -1.26 16 30 C 0.06 0.74 6.07 -2.84 -0.02 0.72 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 33 H 0.03 0.63 7.67 -51.93 -0.40 0.23 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 1.37 7.10 -51.93 -0.37 1.00 16 37 H 0.05 0.61 6.25 -51.93 -0.32 0.28 16 38 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 39 H 0.09 1.22 8.04 -51.93 -0.42 0.81 16 40 H 0.06 0.41 6.78 -51.93 -0.35 0.06 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.14 0.76 7.70 -52.49 -0.40 0.35 16 43 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 44 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.11 1.71 6.80 -51.93 -0.35 1.35 16 46 H 0.06 0.67 7.01 -51.93 -0.36 0.31 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -31.55 383.75 -7.95 -39.50 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.05 Total: -0.38 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.87 Total: -0.61 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.09 Total: -45.85 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.55 -7.95 -39.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286034119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.024 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds