Wall clock time and date at job start Wed Apr 1 2020 04:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46955 * 2 1 4 4 C 1.50697 * 109.47182 * 240.00496 * 2 1 3 5 5 H 1.08002 * 119.99906 * 240.00447 * 4 2 1 6 6 C 1.37881 * 120.00191 * 59.99878 * 4 2 1 7 7 N 1.31517 * 119.99829 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00036 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47196 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46915 * 119.99902 * 8 6 4 11 11 H 1.48493 * 109.47219 * 239.99944 * 8 6 4 12 12 N 1.46495 * 109.47313 * 120.00198 * 2 1 3 13 13 C 1.46503 * 119.99496 * 59.99777 * 12 2 1 14 14 C 1.34773 * 120.00358 * 240.00074 * 12 2 1 15 15 O 1.21282 * 119.99884 * 5.76567 * 14 12 2 16 16 C 1.50706 * 120.00160 * 185.76268 * 14 12 2 17 17 H 1.08995 * 110.62366 * 328.04696 * 16 14 12 18 18 C 1.55143 * 110.70318 * 91.15208 * 16 14 12 19 19 C 1.54902 * 101.68308 * 154.19483 * 18 16 14 20 20 N 1.47889 * 104.77691 * 322.97726 * 19 18 16 21 21 C 1.39335 * 111.01377 * 146.33371 * 20 19 18 22 22 C 1.39105 * 119.93294 * 299.12130 * 21 20 19 23 23 C 1.37686 * 120.10217 * 179.97438 * 22 21 20 24 24 C 1.39788 * 119.96820 * 0.02580 * 23 22 21 25 25 C 1.43192 * 120.07237 * 179.97438 * 24 23 22 26 26 N 9.72977 * 135.32339 * 191.79848 * 14 1 2 27 27 C 1.39825 * 119.85679 * 359.97438 * 24 23 22 28 28 C 1.37833 * 119.89531 * 359.72677 * 27 24 23 29 29 F 1.35102 * 119.98135 * 180.27075 * 28 27 24 30 30 C 1.47448 * 108.58335 * 24.04319 * 20 19 18 31 31 H 1.09000 * 109.47412 * 300.00043 * 1 2 3 32 32 H 1.09002 * 109.47261 * 59.99654 * 1 2 3 33 33 H 1.08996 * 109.47340 * 179.97438 * 1 2 3 34 34 H 0.96999 * 119.99416 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47184 * 264.69234 * 13 12 2 36 36 H 1.08991 * 109.47610 * 24.69999 * 13 12 2 37 37 H 1.09004 * 109.46693 * 144.70067 * 13 12 2 38 38 H 1.08994 * 110.98802 * 272.30111 * 18 16 14 39 39 H 1.09001 * 110.98818 * 36.08053 * 18 16 14 40 40 H 1.08990 * 110.37843 * 81.77729 * 19 18 16 41 41 H 1.09002 * 110.37094 * 204.12128 * 19 18 16 42 42 H 1.07997 * 119.94513 * 359.97438 * 22 21 20 43 43 H 1.08009 * 120.01329 * 179.97438 * 23 22 21 44 44 H 1.07995 * 120.04852 * 180.02562 * 27 24 23 45 45 H 1.08997 * 109.88527 * 239.63323 * 30 20 19 46 46 H 1.09004 * 109.88480 * 118.44871 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2875 -3.6039 10 1 1.1660 -1.5864 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0932 1.4278 14 6 2.7932 -0.0357 2.0833 15 8 3.0003 1.1515 1.9472 16 6 3.4022 -0.7786 3.2445 17 1 2.7490 -1.5896 3.5665 18 6 4.8074 -1.3208 2.8725 19 6 5.4875 -1.4086 4.2614 20 7 4.9883 -0.2294 5.0011 21 6 4.8533 -0.5116 6.3589 22 6 3.9854 -1.5154 6.7762 23 6 3.8497 -1.7976 8.1170 24 6 4.5846 -1.0741 9.0607 25 6 4.4447 -1.3653 10.4557 26 7 4.3349 -1.5973 11.5624 27 6 5.4565 -0.0654 8.6395 28 6 5.5925 0.2081 7.2955 29 9 6.4386 1.1786 6.8863 30 6 3.6987 0.1811 4.4159 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 0.7095 1.1620 -3.4844 35 1 0.7909 -2.1449 2.0779 36 1 1.4376 -2.5728 0.4757 37 1 2.5013 -2.6055 1.9025 38 1 4.7361 -2.3050 2.4097 39 1 5.3355 -0.6232 2.2224 40 1 5.1947 -2.3271 4.7700 41 1 6.5715 -1.3608 4.1568 42 1 3.4172 -2.0742 6.0474 43 1 3.1751 -2.5770 8.4395 44 1 6.0261 0.4952 9.3659 45 1 3.7675 1.2049 4.0483 46 1 2.9108 0.1061 5.1654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286034119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:10 Heat of formation + Delta-G solvation = -24.355053 kcal Electronic energy + Delta-G solvation = -29720.332905 eV Core-core repulsion = 25524.281184 eV Total energy + Delta-G solvation = -4196.051721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -49.78582 -41.69843 -40.52363 -38.98287 -37.36856 -37.01937 -34.85461 -33.78183 -31.81983 -31.47596 -30.02356 -29.94482 -27.51888 -27.28075 -25.38405 -24.04090 -23.71544 -22.20155 -21.89731 -20.29969 -19.71268 -18.62689 -18.27917 -18.04391 -17.63739 -17.18667 -16.98333 -16.61199 -16.22748 -15.95190 -15.55087 -15.27570 -15.03383 -14.99375 -14.76795 -14.54969 -14.46797 -14.23097 -14.09349 -13.91997 -13.77603 -13.47569 -13.37366 -13.14442 -12.95758 -12.83628 -12.77886 -12.70808 -12.63155 -12.60123 -12.30163 -12.22186 -12.12417 -12.08085 -11.76550 -11.15564 -10.62714 -10.44104 -10.04113 -9.69413 -9.53939 -9.27333 -8.12864 -6.29199 -0.50783 0.12518 1.42139 1.44205 1.53907 1.54918 1.71095 1.80486 2.31487 2.48135 2.60466 2.67228 2.76515 3.15448 3.34607 3.50996 3.67391 3.75268 3.84436 3.98771 4.07229 4.20264 4.27936 4.32094 4.44956 4.52445 4.58648 4.71230 4.78936 4.80022 4.90113 4.92971 4.94735 4.99359 5.02577 5.08442 5.11943 5.13599 5.20010 5.21753 5.50530 5.52841 5.64231 5.68714 5.71864 6.07293 6.19111 6.26217 6.37555 6.80051 6.89309 7.35282 7.52895 8.91599 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.002207 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.544213 B =12681.380754 C =12962.242483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.261 3.739 3 H 0.004 0.996 4 C -0.532 4.532 5 H 0.065 0.935 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.261 1.261 10 H -0.277 1.277 11 H -0.289 1.289 12 N -0.599 5.599 13 C 0.077 3.923 14 C 0.504 3.496 15 O -0.605 6.605 16 C -0.118 4.118 17 H 0.137 0.863 18 C -0.110 4.110 19 C 0.057 3.943 20 N -0.515 5.515 21 C 0.078 3.922 22 C -0.116 4.116 23 C -0.050 4.050 24 C -0.008 4.008 25 C 0.282 3.718 26 N -0.455 5.455 27 C -0.093 4.093 28 C 0.102 3.898 29 F -0.138 7.138 30 C 0.068 3.932 31 H 0.018 0.982 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.263 0.737 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.167 0.833 43 H 0.170 0.830 44 H 0.159 0.841 45 H 0.062 0.938 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 -11.915 20.239 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.159 3.841 3 H 0.022 0.978 4 C -0.571 4.571 5 H 0.084 0.916 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.185 1.185 10 H -0.202 1.202 11 H -0.215 1.215 12 N -0.329 5.329 13 C -0.065 4.065 14 C 0.293 3.707 15 O -0.487 6.487 16 C -0.140 4.140 17 H 0.154 0.846 18 C -0.149 4.149 19 C -0.068 4.068 20 N -0.237 5.237 21 C -0.019 4.019 22 C -0.136 4.136 23 C -0.071 4.071 24 C -0.012 4.012 25 C -0.033 4.033 26 N -0.130 5.130 27 C -0.115 4.115 28 C 0.081 3.919 29 F -0.117 7.117 30 C -0.059 4.059 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.185 0.815 43 H 0.187 0.813 44 H 0.177 0.823 45 H 0.081 0.919 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.458 -11.129 21.656 25.190 hybrid contribution -0.129 0.307 -1.756 1.787 sum 6.329 -10.822 19.900 23.520 Atomic orbital electron populations 1.21858 0.97334 1.00089 0.99726 1.18501 0.91565 0.92097 0.81963 0.97811 1.21617 1.31590 1.12985 0.90913 0.91643 1.25774 0.95200 0.95688 1.02175 1.70046 1.37518 1.24006 1.24261 0.85407 0.78142 0.78545 0.78911 1.18455 1.20230 1.21509 1.48216 1.48844 1.13564 1.22252 1.21907 1.01443 0.80412 1.02729 1.21033 0.78323 0.87027 0.84329 1.90630 1.62934 1.18241 1.76904 1.22551 0.99196 0.99287 0.92950 0.84552 1.22663 0.91989 1.02490 0.97713 1.23254 1.00921 0.90931 0.91665 1.60921 1.26987 1.35870 0.99889 1.19412 0.96711 0.95735 0.90023 1.21783 0.98033 0.96709 0.97093 1.21384 0.96692 0.98017 0.91009 1.15710 1.01391 0.99508 0.84565 1.25586 0.92639 0.92650 0.92390 1.81331 1.09391 1.09412 1.12891 1.21110 0.98801 0.97658 0.93939 1.17510 0.92834 0.89594 0.91923 1.91517 1.68474 1.60461 1.91229 1.22740 0.89037 0.99298 0.94795 0.96336 0.91723 0.93299 0.92785 0.91394 0.91296 0.88818 0.87092 0.93079 0.88932 0.89215 0.81520 0.81300 0.82305 0.91918 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 8.97 71.98 0.65 -5.55 16 2 C 0.26 13.19 2.62 44.24 0.12 13.30 16 3 H 0.00 0.24 6.92 -2.39 -0.02 0.22 16 4 C -0.53 -27.88 7.95 25.60 0.20 -27.68 16 5 H 0.07 3.27 7.42 -2.91 -0.02 3.25 16 6 C 0.01 0.59 5.30 84.66 0.45 1.03 16 7 N -0.92 -52.55 11.32 21.45 0.24 -52.31 16 8 Si 0.96 42.02 29.54 68.60 2.03 44.05 16 9 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 12 N -0.60 -23.35 2.75 -826.81 -2.28 -25.63 16 13 C 0.08 2.05 8.79 127.77 1.12 3.18 16 14 C 0.50 19.16 6.83 87.66 0.60 19.76 16 15 O -0.60 -29.94 14.97 -3.04 -0.05 -29.98 16 16 C -0.12 -2.74 2.38 -10.36 -0.02 -2.77 16 17 H 0.14 2.02 6.67 -2.39 -0.02 2.00 16 18 C -0.11 -2.24 6.41 31.98 0.21 -2.04 16 19 C 0.06 0.88 6.55 86.76 0.57 1.45 16 20 N -0.51 -10.41 4.98 -684.80 -3.41 -13.81 16 21 C 0.08 1.19 4.64 38.42 0.18 1.37 16 22 C -0.12 -0.97 7.77 22.35 0.17 -0.79 16 23 C -0.05 -0.32 9.74 22.51 0.22 -0.10 16 24 C -0.01 -0.08 5.74 -21.28 -0.12 -0.20 16 25 C 0.28 3.91 15.33 88.33 1.35 5.27 16 26 N -0.45 -8.91 18.54 19.00 0.35 -8.56 16 27 C -0.09 -1.09 9.72 22.56 0.22 -0.87 16 28 C 0.10 1.69 7.30 22.44 0.16 1.85 16 29 F -0.14 -3.10 17.07 44.97 0.77 -2.33 16 30 C 0.07 1.60 6.07 86.64 0.53 2.13 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 33 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 34 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 2.07 7.10 -2.39 -0.02 2.05 16 37 H 0.09 1.70 6.25 -2.39 -0.01 1.68 16 38 H 0.11 1.68 7.85 -2.39 -0.02 1.66 16 39 H 0.05 1.43 8.04 -2.39 -0.02 1.41 16 40 H 0.09 0.80 6.78 -2.39 -0.02 0.79 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.17 0.65 7.70 -2.91 -0.02 0.63 16 43 H 0.17 0.19 8.06 -2.91 -0.02 0.16 16 44 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 45 H 0.06 2.09 6.80 -2.39 -0.02 2.07 16 46 H 0.08 1.59 7.01 -2.38 -0.02 1.57 16 Total: -1.00 -76.09 383.75 5.27 -70.81 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.02 Total: 8.43 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 6.60 Total: 9.33 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -5.09 Total: -100.31 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.05 Total: -29.98 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.77 Total: -2.33 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -76.09 5.27 -70.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286034119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.459 kcal (2) G-P(sol) polarization free energy of solvation -76.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds