Wall clock time and date at job start Wed Apr 1 2020 03:02:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35671 * 116.99499 * 2 1
4 4 C 1.38928 * 119.67956 * 180.02562 * 3 2 1
5 5 C 1.38380 * 119.10996 * 179.97438 * 4 3 2
6 6 C 1.50694 * 120.75671 * 179.97438 * 5 4 3
7 7 H 1.09001 * 109.47197 * 19.99944 * 6 5 4
8 8 C 1.52996 * 109.47266 * 260.00005 * 6 5 4
9 9 N 1.46500 * 109.47153 * 140.00233 * 6 5 4
10 10 C 1.34781 * 120.00116 * 205.00358 * 9 6 5
11 11 O 1.21586 * 119.99728 * 359.97438 * 10 9 6
12 12 N 1.34776 * 119.99821 * 179.97438 * 10 9 6
13 13 C 1.40195 * 119.99656 * 179.97438 * 12 10 9
14 14 C 1.40401 * 125.97296 * 359.72416 * 13 12 10
15 15 C 1.35250 * 107.86669 * 179.82863 * 14 13 12
16 16 N 1.34964 * 107.85645 * 0.42405 * 15 14 13
17 17 C 1.46502 * 125.97405 * 179.70963 * 16 15 14
18 18 C 1.50703 * 109.46937 * 125.00115 * 17 16 15
19 19 H 1.08003 * 119.99995 * 359.97438 * 18 17 16
20 20 C 1.37876 * 119.99842 * 180.02562 * 18 17 16
21 21 N 1.31509 * 120.00018 * 179.97438 * 20 18 17
22 22 Si 1.86802 * 119.99904 * 359.97438 * 20 18 17
23 23 H 1.48495 * 109.47123 * 90.00486 * 22 20 18
24 24 H 1.48509 * 109.46687 * 210.00167 * 22 20 18
25 25 H 1.48498 * 109.47283 * 329.99982 * 22 20 18
26 26 N 1.31216 * 125.97420 * 180.02562 * 13 12 10
27 27 C 1.38830 * 118.48696 * 359.97438 * 5 4 3
28 28 C 1.38052 * 119.28669 * 359.97438 * 27 5 4
29 29 N 1.31964 * 120.83627 * 359.97438 * 28 27 5
30 30 H 1.09001 * 109.46852 * 60.01080 * 1 2 3
31 31 H 1.09000 * 109.47027 * 179.97438 * 1 2 3
32 32 H 1.08994 * 109.47412 * 300.00127 * 1 2 3
33 33 H 1.07995 * 120.44492 * 359.95163 * 4 3 2
34 34 H 1.09005 * 109.47418 * 300.00289 * 8 6 5
35 35 H 1.08998 * 109.47481 * 59.99915 * 8 6 5
36 36 H 1.09003 * 109.47316 * 179.97438 * 8 6 5
37 37 H 0.96997 * 119.99894 * 24.99672 * 9 6 5
38 38 H 0.96997 * 120.00188 * 359.97438 * 12 10 9
39 39 H 1.07998 * 126.06837 * 359.97438 * 14 13 12
40 40 H 1.08005 * 126.06786 * 180.15967 * 15 14 13
41 41 H 1.08998 * 109.47153 * 245.00027 * 17 16 15
42 42 H 1.08997 * 109.47167 * 5.00067 * 17 16 15
43 43 H 0.97004 * 120.00535 * 179.97438 * 21 20 18
44 44 H 1.07998 * 120.35753 * 179.97438 * 27 5 4
45 45 H 1.08007 * 119.57949 * 180.28077 * 28 27 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2089 0.0000
4 6 3.4326 1.2740 -0.0005
5 6 4.0485 2.5132 -0.0011
6 6 5.5511 2.6270 -0.0011
7 1 5.9864 1.6913 -0.3521
8 6 6.0407 2.9159 1.4193
9 7 5.9582 3.7186 -0.8894
10 6 7.1842 3.7104 -1.4490
11 8 7.9526 2.7973 -1.2163
12 7 7.5585 4.7144 -2.2666
13 6 8.8340 4.7061 -2.8483
14 6 9.8188 3.7228 -2.6625
15 6 10.9003 4.0753 -3.3942
16 7 10.6191 5.2411 -4.0133
17 6 11.5176 5.9821 -4.9021
18 6 10.8331 6.2205 -6.2233
19 1 9.8293 5.8560 -6.3850
20 6 11.4886 6.9029 -7.2261
21 7 10.8915 7.1104 -8.3793
22 14 13.2249 7.5326 -6.9467
23 1 14.2011 6.4917 -7.3574
24 1 13.4419 8.7605 -7.7534
25 1 13.4120 7.8465 -5.5074
26 7 9.3182 5.6188 -3.6572
27 6 3.2504 3.6492 -0.0016
28 6 1.8770 3.5096 -0.0021
29 7 1.3185 2.3140 -0.0026
30 1 -0.3633 0.5137 -0.8901
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8899
33 1 4.0229 0.3696 -0.0002
34 1 5.6055 3.8515 1.7705
35 1 5.7379 2.1038 2.0803
36 1 7.1277 2.9978 1.4194
37 1 5.3452 4.4471 -1.0748
38 1 6.9453 5.4426 -2.4525
39 1 9.7280 2.8403 -2.0466
40 1 11.8263 3.5240 -3.4665
41 1 11.7713 6.9393 -4.4465
42 1 12.4274 5.4040 -5.0633
43 1 11.3525 7.5909 -9.0848
44 1 3.6992 4.6315 -0.0016
45 1 1.2516 4.3902 -0.0071
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000349647936.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:02:57
Heat of formation + Delta-G solvation = 38.857922 kcal
Electronic energy + Delta-G solvation = -28465.319764 eV
Core-core repulsion = 24291.929125 eV
Total energy + Delta-G solvation = -4173.390639 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.60 seconds
Orbital eigenvalues (eV)
-42.26857 -41.78345 -40.91017 -39.12269 -37.14855 -36.08191 -35.20650 -33.73414
-32.83290 -31.67433 -31.03711 -30.66096 -28.86795 -28.18130 -25.60977 -24.56340
-24.51564 -23.30551 -22.16432 -21.63823 -21.30341 -19.64037 -19.07388 -18.80189
-18.25807 -18.01208 -17.09163 -17.00261 -16.90450 -16.73823 -16.23733 -16.07311
-15.79087 -15.34015 -15.30458 -14.98654 -14.78210 -14.72677 -14.35777 -14.27974
-14.01633 -13.79535 -13.72776 -13.20765 -13.06652 -12.94909 -12.62625 -12.51843
-12.33009 -12.20816 -12.16441 -11.81904 -11.60181 -11.45729 -11.13286 -10.85610
-10.81707 -10.72272 -10.27028 -9.71967 -9.53418 -9.02213 -8.36065 -6.46185
0.08314 0.17871 1.05856 1.13613 1.37968 1.41116 1.50734 1.71039
2.02564 2.17739 2.30359 2.41410 2.72975 2.96515 3.12215 3.28036
3.47506 3.92080 3.95306 4.07268 4.10826 4.23404 4.26955 4.42078
4.43051 4.43819 4.62668 4.66341 4.73119 4.75942 4.76270 4.85833
4.88926 4.92416 4.96418 5.11402 5.17971 5.26410 5.27616 5.40970
5.50387 5.80466 5.94344 6.04220 6.21891 6.43712 6.59076 6.71656
6.82510 7.13192 7.17188 7.40737 8.81002
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.021929 B = 0.001761 C = 0.001702
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1276.518648 B =15896.402674 C =16451.165755
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 O -0.324 6.324
3 C 0.304 3.696
4 C -0.188 4.188
5 C -0.012 4.012
6 C 0.207 3.793
7 H 0.091 0.909
8 C -0.154 4.154
9 N -0.718 5.718
10 C 0.717 3.283
11 O -0.595 6.595
12 N -0.637 5.637
13 C 0.285 3.715
14 C -0.292 4.292
15 C 0.060 3.940
16 N -0.345 5.345
17 C 0.240 3.760
18 C -0.546 4.546
19 H 0.026 0.974
20 C 0.014 3.986
21 N -0.943 5.943
22 Si 0.956 3.044
23 H -0.254 1.254
24 H -0.281 1.281
25 H -0.239 1.239
26 N -0.350 5.350
27 C -0.198 4.198
28 C 0.139 3.861
29 N -0.557 5.557
30 H 0.055 0.945
31 H 0.119 0.881
32 H 0.059 0.941
33 H 0.149 0.851
34 H 0.075 0.925
35 H 0.080 0.920
36 H 0.055 0.945
37 H 0.413 0.587
38 H 0.420 0.580
39 H 0.169 0.831
40 H 0.210 0.790
41 H 0.046 0.954
42 H 0.081 0.919
43 H 0.272 0.728
44 H 0.165 0.835
45 H 0.190 0.810
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.658 -9.467 23.008 29.941
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 O -0.231 6.231
3 C 0.126 3.874
4 C -0.209 4.209
5 C -0.021 4.021
6 C 0.102 3.898
7 H 0.109 0.891
8 C -0.212 4.212
9 N -0.376 5.376
10 C 0.416 3.584
11 O -0.472 6.472
12 N -0.289 5.289
13 C 0.029 3.971
14 C -0.323 4.323
15 C -0.088 4.088
16 N -0.127 5.127
17 C 0.120 3.880
18 C -0.585 4.585
19 H 0.044 0.956
20 C -0.185 4.185
21 N -0.582 5.582
22 Si 0.777 3.223
23 H -0.178 1.178
24 H -0.207 1.207
25 H -0.162 1.162
26 N -0.181 5.181
27 C -0.218 4.218
28 C -0.016 4.016
29 N -0.281 5.281
30 H 0.074 0.926
31 H 0.137 0.863
32 H 0.078 0.922
33 H 0.166 0.834
34 H 0.094 0.906
35 H 0.099 0.901
36 H 0.074 0.926
37 H 0.251 0.749
38 H 0.257 0.743
39 H 0.186 0.814
40 H 0.226 0.774
41 H 0.064 0.936
42 H 0.099 0.901
43 H 0.081 0.919
44 H 0.182 0.818
45 H 0.207 0.793
Dipole moment (debyes) X Y Z Total
from point charges -16.945 -9.435 22.393 29.624
hybrid contribution 0.465 0.445 -0.480 0.802
sum -16.481 -8.991 21.913 28.855
Atomic orbital electron populations
1.23034 0.75811 1.04545 1.02258 1.86223 1.24398 1.24712 1.87807
1.19977 0.89638 0.85083 0.92702 1.20997 0.92046 0.99640 1.08231
1.20051 0.94946 0.92850 0.94212 1.19611 0.88620 0.90678 0.90863
0.89063 1.22144 1.01647 1.03544 0.93881 1.44960 1.13923 1.27937
1.50744 1.15665 0.82964 0.81435 0.78325 1.90841 1.53039 1.37282
1.66073 1.41376 1.12852 1.26514 1.48113 1.19111 0.87344 0.95097
0.95546 1.21736 0.93242 1.05131 1.12238 1.23244 1.01984 0.88672
0.94925 1.48473 1.09784 1.18324 1.36164 1.19872 0.88119 0.93038
0.86981 1.21245 1.01800 1.37862 0.97547 0.95561 1.25928 1.03634
0.94986 0.93963 1.70051 1.40436 1.41980 1.05689 0.85612 0.77788
0.78688 0.80255 1.17808 1.20682 1.16176 1.77301 0.95640 1.24486
1.20639 1.22071 0.94625 1.00031 1.05093 1.22944 0.93379 0.93857
0.91387 1.67359 1.41598 0.99480 1.19692 0.92650 0.86275 0.92230
0.83357 0.90628 0.90079 0.92573 0.74926 0.74264 0.81364 0.77378
0.93649 0.90109 0.91922 0.81766 0.79278
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.47 10.38 113.37 1.18 1.64 16
2 O -0.32 -5.98 10.48 -89.88 -0.94 -6.93 16
3 C 0.30 5.69 7.49 84.80 0.63 6.33 16
4 C -0.19 -3.12 9.71 22.47 0.22 -2.90 16
5 C -0.01 -0.17 4.98 -19.69 -0.10 -0.27 16
6 C 0.21 3.21 2.81 44.24 0.12 3.34 16
7 H 0.09 1.75 7.48 -2.39 -0.02 1.74 16
8 C -0.15 -2.07 9.47 71.98 0.68 -1.39 16
9 N -0.72 -12.14 5.04 -461.42 -2.33 -14.46 16
10 C 0.72 19.11 8.50 179.05 1.52 20.63 16
11 O -0.59 -19.74 13.13 -3.99 -0.05 -19.79 16
12 N -0.64 -18.68 5.46 -321.23 -1.75 -20.43 16
13 C 0.28 11.16 8.11 133.31 1.08 12.24 16
14 C -0.29 -11.02 9.61 22.11 0.21 -10.81 16
15 C 0.06 2.19 11.44 83.52 0.96 3.14 16
16 N -0.35 -15.40 3.67 -351.83 -1.29 -16.69 16
17 C 0.24 11.05 5.33 85.63 0.46 11.51 16
18 C -0.55 -31.52 9.79 25.60 0.25 -31.27 16
19 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16
20 C 0.01 0.77 5.47 84.66 0.46 1.23 16
21 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16
22 Si 0.96 40.56 27.47 68.60 1.88 42.45 16
23 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16
24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16
25 H -0.24 -9.10 6.54 99.48 0.65 -8.45 16
26 N -0.35 -16.09 12.42 -54.43 -0.68 -16.77 16
27 C -0.20 -2.05 9.15 22.37 0.20 -1.84 16
28 C 0.14 1.65 11.18 84.63 0.95 2.59 16
29 N -0.56 -9.63 9.22 -308.95 -2.85 -12.48 16
30 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16
31 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16
32 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16
33 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16
34 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16
35 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16
36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
37 H 0.41 4.48 6.96 -92.71 -0.65 3.84 16
38 H 0.42 9.83 8.84 -92.71 -0.82 9.01 16
39 H 0.17 6.16 5.91 -2.91 -0.02 6.14 16
40 H 0.21 5.61 8.06 -2.91 -0.02 5.58 16
41 H 0.05 2.04 7.20 -2.39 -0.02 2.03 16
42 H 0.08 3.20 7.50 -2.39 -0.02 3.18 16
43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16
44 H 0.16 0.75 7.01 -2.91 -0.02 0.73 16
45 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16
Total: -1.00 -81.65 385.19 0.65 -81.00
By element:
Atomic # 1 Polarization: 28.16 SS G_CDS: -0.47 Total: 27.69 kcal
Atomic # 6 Polarization: 5.35 SS G_CDS: 8.83 Total: 14.18 kcal
Atomic # 7 Polarization: -130.01 SS G_CDS: -8.59 Total: -138.60 kcal
Atomic # 8 Polarization: -25.72 SS G_CDS: -0.99 Total: -26.72 kcal
Atomic # 14 Polarization: 40.56 SS G_CDS: 1.88 Total: 42.45 kcal
Total: -81.65 0.65 -81.00 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000349647936.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.855 kcal
(2) G-P(sol) polarization free energy of solvation -81.652 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.203 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.997 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.858 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.60 seconds