Wall clock time and date at job start Wed Apr 1 2020 04:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47103 * 2 1 4 4 C 1.50695 * 109.47714 * 120.00607 * 2 1 3 5 5 H 1.07996 * 120.00362 * 119.99629 * 4 2 1 6 6 C 1.37883 * 119.99552 * 299.99890 * 4 2 1 7 7 N 1.31520 * 120.00189 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99887 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47427 * 90.00046 * 8 6 4 10 10 H 1.48494 * 109.47388 * 210.00351 * 8 6 4 11 11 H 1.48504 * 109.47120 * 330.00188 * 8 6 4 12 12 N 1.46508 * 109.46916 * 240.00646 * 2 1 3 13 13 C 1.46504 * 119.99688 * 299.99720 * 12 2 1 14 14 S 1.65599 * 120.00023 * 119.99642 * 12 2 1 15 15 O 1.42104 * 106.40138 * 336.46106 * 14 12 2 16 16 O 1.42094 * 106.40116 * 203.54019 * 14 12 2 17 17 N 1.65599 * 107.21627 * 89.99853 * 14 12 2 18 18 C 1.46501 * 119.99914 * 65.00000 * 17 14 12 19 19 C 1.50706 * 109.46977 * 164.99567 * 18 17 14 20 20 N 1.30823 * 125.96477 * 274.71371 * 19 18 17 21 21 C 1.33239 * 109.83132 * 179.86544 * 20 19 18 22 22 C 1.50707 * 125.52868 * 180.12910 * 21 20 19 23 23 C 1.53002 * 109.46980 * 180.29698 * 22 21 20 24 24 C 1.53003 * 109.46906 * 300.29803 * 22 21 20 25 25 C 1.52999 * 109.46956 * 60.29774 * 22 21 20 26 26 N 1.30713 * 108.94688 * 0.40381 * 21 20 19 27 27 N 1.34432 * 125.95558 * 95.02754 * 19 18 17 28 28 H 0.96998 * 126.82887 * 0.02562 * 27 19 18 29 29 H 1.08999 * 109.47554 * 60.00002 * 1 2 3 30 30 H 1.08996 * 109.46622 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46877 * 299.99002 * 1 2 3 32 32 H 0.96996 * 119.99610 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46600 * 270.00267 * 13 12 2 34 34 H 1.08992 * 109.46867 * 29.99889 * 13 12 2 35 35 H 1.09000 * 109.46605 * 150.00421 * 13 12 2 36 36 H 0.97001 * 120.00128 * 244.99479 * 17 14 12 37 37 H 1.09005 * 109.47039 * 44.99919 * 18 17 14 38 38 H 1.08998 * 109.47126 * 284.99915 * 18 17 14 39 39 H 1.09004 * 109.47113 * 60.00168 * 23 22 21 40 40 H 1.08999 * 109.46763 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.46982 * 299.99997 * 23 22 21 42 42 H 1.08999 * 109.47221 * 59.99711 * 24 22 21 43 43 H 1.08993 * 109.46469 * 179.97438 * 24 22 21 44 44 H 1.08995 * 109.46986 * 299.99890 * 24 22 21 45 45 H 1.08997 * 109.47339 * 59.99799 * 25 22 21 46 46 H 1.08999 * 109.46947 * 180.02562 * 25 22 21 47 47 H 1.09004 * 109.47164 * 299.99735 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2303 5 1 2.6534 -1.5885 1.1311 6 6 1.6995 -0.2395 2.4827 7 7 0.9429 0.8295 2.6035 8 14 2.3216 -1.1205 4.0078 9 1 3.6300 -0.5461 4.4122 10 1 1.3435 -0.9496 5.1119 11 1 2.4862 -2.5664 3.7117 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 16 2.9703 0.1144 -2.2864 15 8 2.6902 1.4975 -2.1192 16 8 2.8226 -0.5642 -3.5260 17 7 4.5437 -0.1040 -1.8182 18 6 5.1357 -1.4438 -1.8418 19 6 6.6349 -1.3325 -1.7356 20 7 7.4633 -1.1393 -2.7295 21 6 8.7138 -1.0896 -2.2724 22 6 9.9461 -0.8780 -3.1139 23 6 11.1851 -0.8923 -2.2164 24 6 10.0542 -1.9982 -4.1505 25 6 9.8498 0.4711 -3.8290 26 7 8.6992 -1.2599 -0.9765 27 7 7.3546 -1.4204 -0.6036 28 1 7.0134 -1.5665 0.2926 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.7089 1.1610 3.4845 33 1 2.4158 -2.7376 -0.9719 34 1 0.6905 -2.3001 -0.9848 35 1 1.6238 -2.2850 -2.5004 36 1 5.0733 0.6552 -1.5284 37 1 4.8735 -1.9405 -2.7761 38 1 4.7540 -2.0246 -1.0021 39 1 11.2537 -1.8535 -1.7069 40 1 12.0764 -0.7398 -2.8251 41 1 11.1081 -0.0943 -1.4779 42 1 9.1714 -1.9881 -4.7898 43 1 10.9451 -1.8449 -4.7593 44 1 10.1227 -2.9593 -3.6410 45 1 9.7727 1.2691 -3.0906 46 1 10.7408 0.6239 -4.4380 47 1 8.9671 0.4813 -4.4684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416539345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:12 Heat of formation + Delta-G solvation = -1.925120 kcal Electronic energy + Delta-G solvation = -29334.970561 eV Core-core repulsion = 25295.255388 eV Total energy + Delta-G solvation = -4039.715173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.36236 -37.23177 -36.79393 -36.26015 -35.35618 -35.27913 -32.69851 -32.33061 -30.98628 -29.15870 -27.58770 -27.44555 -26.32475 -25.63414 -25.23279 -23.36133 -21.25408 -20.84879 -19.17360 -19.03636 -18.01655 -17.33598 -16.84144 -16.52418 -16.22558 -15.53394 -15.39477 -15.12130 -14.48643 -14.25005 -14.05622 -13.96830 -13.59213 -13.48923 -13.29701 -12.88103 -12.48477 -12.41974 -12.14704 -12.05665 -11.86788 -11.84044 -11.70785 -11.60485 -11.55173 -11.43968 -11.26589 -11.23935 -11.14609 -11.09583 -10.93324 -10.53569 -10.33952 -10.14971 -10.13919 -10.09518 -9.70992 -9.57944 -9.28058 -8.57521 -8.07988 -6.18476 -4.27782 0.99984 1.49743 2.48034 2.70059 3.15470 3.23717 3.24866 3.43570 3.65262 4.02601 4.25954 4.29367 4.46019 4.74963 4.81315 4.91409 4.94524 5.12054 5.24238 5.31062 5.44507 5.47724 5.56755 5.60158 5.63539 5.69495 5.70918 5.76052 5.89192 6.06973 6.10465 6.11388 6.19945 6.24863 6.30799 6.55540 6.76323 6.79339 6.89773 6.98614 7.04804 7.41157 7.53530 7.69854 7.95644 7.97009 8.16657 8.74847 9.38922 10.86457 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003328 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.475494 B = 8410.517720 C = 9815.244988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.989 5.989 13 C 0.096 3.904 14 S 2.785 3.215 15 O -0.974 6.974 16 O -0.992 6.992 17 N -1.123 6.123 18 C 0.204 3.796 19 C 0.282 3.718 20 N -0.519 5.519 21 C 0.233 3.767 22 C 0.027 3.973 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.137 4.137 26 N -0.307 5.307 27 N -0.471 5.471 28 H 0.445 0.555 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.093 0.907 32 H 0.264 0.736 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.416 0.584 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.065 0.935 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.066 -5.888 -8.665 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.523 5.523 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.832 5.832 13 C -0.051 4.051 14 S 2.793 3.207 15 O -0.958 6.958 16 O -0.975 6.975 17 N -0.882 5.882 18 C 0.075 3.925 19 C 0.001 3.999 20 N -0.248 5.248 21 C -0.049 4.049 22 C 0.024 3.976 23 C -0.195 4.195 24 C -0.194 4.194 25 C -0.196 4.196 26 N -0.136 5.136 27 N -0.190 5.190 28 H 0.291 0.709 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.249 0.751 37 H 0.131 0.869 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.129 -5.413 -9.285 17.752 hybrid contribution 0.191 -0.483 2.298 2.356 sum 14.320 -5.896 -6.987 16.989 Atomic orbital electron populations 1.22068 0.97919 0.99688 1.00920 1.18751 0.91955 0.92737 0.80107 0.92304 1.21345 1.32113 1.13068 0.90144 0.92019 1.24936 0.94951 0.94972 0.99003 1.69875 1.35960 1.22557 1.23897 0.86548 0.78610 0.79845 0.82625 1.20767 1.21119 1.19939 1.57717 1.64081 1.21561 1.39852 1.21326 1.02068 0.81594 1.00083 1.01811 0.72261 0.73304 0.73299 1.93615 1.83208 1.32225 1.86789 1.93546 1.85711 1.76317 1.41930 1.56129 1.32565 1.13716 1.85770 1.19596 0.82262 0.85734 1.04944 1.24217 0.96342 0.96646 0.82680 1.70326 0.99866 1.23703 1.30912 1.24178 0.93857 0.97647 0.89265 1.18953 0.87906 0.97458 0.93283 1.21810 0.95652 1.02889 0.99139 1.21830 1.02726 0.96875 0.97987 1.21843 1.02805 0.94546 1.00365 1.77998 0.94915 1.25924 1.14778 1.48093 1.04730 1.55301 1.10892 0.70857 0.96724 0.94744 0.88852 0.92555 0.93910 0.90416 0.91791 0.75136 0.86934 0.88982 0.92107 0.91788 0.92051 0.91277 0.91635 0.92682 0.92591 0.91610 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.95 37.16 0.33 -2.98 16 2 C 0.27 6.13 2.62 -69.08 -0.18 5.95 16 3 H 0.06 1.51 6.91 -51.93 -0.36 1.16 16 4 C -0.53 -12.63 8.37 -34.44 -0.29 -12.92 16 5 H 0.06 1.40 7.65 -52.49 -0.40 1.00 16 6 C 0.06 1.61 5.30 -17.81 -0.09 1.52 16 7 N -0.89 -23.46 11.32 55.43 0.63 -22.83 16 8 Si 0.90 19.40 29.54 -169.99 -5.02 14.38 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 12 N -0.99 -18.71 3.12 -115.85 -0.36 -19.07 16 13 C 0.10 1.52 9.90 59.85 0.59 2.11 16 14 S 2.79 50.72 6.14 -107.50 -0.66 50.06 16 15 O -0.97 -21.26 16.70 -57.17 -0.95 -22.21 16 16 O -0.99 -18.91 16.21 -57.17 -0.93 -19.84 16 17 N -1.12 -16.56 6.05 -11.65 -0.07 -16.63 16 18 C 0.20 2.54 6.87 -5.19 -0.04 2.50 16 19 C 0.28 3.67 7.63 -155.70 -1.19 2.48 16 20 N -0.52 -7.35 11.19 -8.16 -0.09 -7.44 16 21 C 0.23 3.07 6.36 -156.85 -1.00 2.07 16 22 C 0.03 0.27 0.99 -155.65 -0.15 0.12 16 23 C -0.14 -1.21 7.93 37.16 0.29 -0.92 16 24 C -0.14 -1.20 8.46 37.16 0.31 -0.89 16 25 C -0.14 -1.29 8.46 37.16 0.31 -0.98 16 26 N -0.31 -4.14 12.06 32.42 0.39 -3.75 16 27 N -0.47 -5.74 7.45 32.62 0.24 -5.50 16 28 H 0.44 4.37 8.96 -182.33 -1.63 2.73 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 31 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 32 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.25 6.43 -51.93 -0.33 0.92 16 35 H 0.06 0.92 7.02 -51.93 -0.36 0.56 16 36 H 0.42 5.86 8.64 -34.47 -0.30 5.56 16 37 H 0.11 1.34 7.75 -51.93 -0.40 0.94 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 395.04 15.07 5.95 5.95 Total: -1.00 -31.78 395.04 -10.63 -42.40 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -8.66 Total: 6.40 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.09 Total: -1.93 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: 0.74 Total: -75.22 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -1.88 Total: -42.05 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Atomic # 16 Polarization: 50.72 SS G_CDS: -0.66 Total: 50.06 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.78 -10.63 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416539345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.477 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds