Wall clock time and date at job start Wed Apr 1 2020 04:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47103 * 2 1 4 4 C 1.50695 * 109.47714 * 120.00607 * 2 1 3 5 5 H 1.07996 * 120.00362 * 119.99629 * 4 2 1 6 6 C 1.37883 * 119.99552 * 299.99890 * 4 2 1 7 7 N 1.31520 * 120.00189 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99887 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47427 * 90.00046 * 8 6 4 10 10 H 1.48494 * 109.47388 * 210.00351 * 8 6 4 11 11 H 1.48504 * 109.47120 * 330.00188 * 8 6 4 12 12 N 1.46508 * 109.46916 * 240.00646 * 2 1 3 13 13 C 1.46504 * 119.99688 * 299.99720 * 12 2 1 14 14 S 1.65599 * 120.00023 * 119.99642 * 12 2 1 15 15 O 1.42104 * 106.40138 * 336.46106 * 14 12 2 16 16 O 1.42094 * 106.40116 * 203.54019 * 14 12 2 17 17 N 1.65599 * 107.21627 * 89.99853 * 14 12 2 18 18 C 1.46501 * 119.99914 * 65.00000 * 17 14 12 19 19 C 1.50706 * 109.46977 * 164.99567 * 18 17 14 20 20 N 1.30823 * 125.96477 * 274.71371 * 19 18 17 21 21 C 1.33239 * 109.83132 * 179.86544 * 20 19 18 22 22 C 1.50707 * 125.52868 * 180.12910 * 21 20 19 23 23 C 1.53002 * 109.46980 * 180.29698 * 22 21 20 24 24 C 1.53003 * 109.46906 * 300.29803 * 22 21 20 25 25 C 1.52999 * 109.46956 * 60.29774 * 22 21 20 26 26 N 1.30713 * 108.94688 * 0.40381 * 21 20 19 27 27 N 1.34432 * 125.95558 * 95.02754 * 19 18 17 28 28 H 0.96998 * 126.82887 * 0.02562 * 27 19 18 29 29 H 1.08999 * 109.47554 * 60.00002 * 1 2 3 30 30 H 1.08996 * 109.46622 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46877 * 299.99002 * 1 2 3 32 32 H 0.96996 * 119.99610 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46600 * 270.00267 * 13 12 2 34 34 H 1.08992 * 109.46867 * 29.99889 * 13 12 2 35 35 H 1.09000 * 109.46605 * 150.00421 * 13 12 2 36 36 H 0.97001 * 120.00128 * 244.99479 * 17 14 12 37 37 H 1.09005 * 109.47039 * 44.99919 * 18 17 14 38 38 H 1.08998 * 109.47126 * 284.99915 * 18 17 14 39 39 H 1.09004 * 109.47113 * 60.00168 * 23 22 21 40 40 H 1.08999 * 109.46763 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.46982 * 299.99997 * 23 22 21 42 42 H 1.08999 * 109.47221 * 59.99711 * 24 22 21 43 43 H 1.08993 * 109.46469 * 179.97438 * 24 22 21 44 44 H 1.08995 * 109.46986 * 299.99890 * 24 22 21 45 45 H 1.08997 * 109.47339 * 59.99799 * 25 22 21 46 46 H 1.08999 * 109.46947 * 180.02562 * 25 22 21 47 47 H 1.09004 * 109.47164 * 299.99735 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2303 5 1 2.6534 -1.5885 1.1311 6 6 1.6995 -0.2395 2.4827 7 7 0.9429 0.8295 2.6035 8 14 2.3216 -1.1205 4.0078 9 1 3.6300 -0.5461 4.4122 10 1 1.3435 -0.9496 5.1119 11 1 2.4862 -2.5664 3.7117 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 16 2.9703 0.1144 -2.2864 15 8 2.6902 1.4975 -2.1192 16 8 2.8226 -0.5642 -3.5260 17 7 4.5437 -0.1040 -1.8182 18 6 5.1357 -1.4438 -1.8418 19 6 6.6349 -1.3325 -1.7356 20 7 7.4633 -1.1393 -2.7295 21 6 8.7138 -1.0896 -2.2724 22 6 9.9461 -0.8780 -3.1139 23 6 11.1851 -0.8923 -2.2164 24 6 10.0542 -1.9982 -4.1505 25 6 9.8498 0.4711 -3.8290 26 7 8.6992 -1.2599 -0.9765 27 7 7.3546 -1.4204 -0.6036 28 1 7.0134 -1.5665 0.2926 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.7089 1.1610 3.4845 33 1 2.4158 -2.7376 -0.9719 34 1 0.6905 -2.3001 -0.9848 35 1 1.6238 -2.2850 -2.5004 36 1 5.0733 0.6552 -1.5284 37 1 4.8735 -1.9405 -2.7761 38 1 4.7540 -2.0246 -1.0021 39 1 11.2537 -1.8535 -1.7069 40 1 12.0764 -0.7398 -2.8251 41 1 11.1081 -0.0943 -1.4779 42 1 9.1714 -1.9881 -4.7898 43 1 10.9451 -1.8449 -4.7593 44 1 10.1227 -2.9593 -3.6410 45 1 9.7727 1.2691 -3.0906 46 1 10.7408 0.6239 -4.4380 47 1 8.9671 0.4813 -4.4684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416539345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:09 Heat of formation + Delta-G solvation = -24.829821 kcal Electronic energy + Delta-G solvation = -29335.963783 eV Core-core repulsion = 25295.255388 eV Total energy + Delta-G solvation = -4040.708395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 4.40 seconds Orbital eigenvalues (eV) -43.34611 -38.38596 -38.01875 -37.87030 -36.92398 -36.40805 -34.48732 -33.32387 -32.01645 -30.88628 -28.36084 -28.15148 -27.38407 -27.21673 -26.90042 -24.26305 -22.60992 -22.22220 -20.45525 -20.04892 -19.08534 -18.77002 -18.27857 -18.25002 -17.53209 -16.87275 -16.51882 -16.20678 -15.97056 -15.20039 -15.13826 -15.02396 -14.81854 -14.67972 -14.58083 -14.46982 -13.63838 -13.44700 -13.38099 -13.21190 -13.16468 -13.13097 -13.08210 -12.88428 -12.84503 -12.76134 -12.59585 -12.57453 -12.35511 -12.22324 -12.10431 -12.02094 -11.90732 -11.85025 -11.16553 -11.13527 -11.08960 -10.72249 -10.63704 -10.47548 -9.64893 -8.06974 -6.21732 -0.41186 0.44391 1.46012 1.49210 1.54666 1.57096 1.66950 2.09086 2.46853 2.58159 2.75109 3.22353 3.39562 3.41532 3.59667 4.00774 4.01465 4.12221 4.18269 4.28330 4.41460 4.59335 4.77364 4.79109 4.79336 4.87106 4.88658 4.89280 4.99173 4.99756 5.00643 5.09308 5.16413 5.20499 5.20782 5.23477 5.39041 5.43033 5.44745 5.63148 5.68477 5.86024 5.93131 6.01392 6.13026 6.31756 6.88447 6.98216 7.48392 8.97542 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003328 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.475494 B = 8410.517720 C = 9815.244988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.525 4.525 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.957 3.043 9 H -0.281 1.281 10 H -0.294 1.294 11 H -0.260 1.260 12 N -0.992 5.992 13 C 0.087 3.913 14 S 2.805 3.195 15 O -1.015 7.015 16 O -0.999 6.999 17 N -1.117 6.117 18 C 0.201 3.799 19 C 0.280 3.720 20 N -0.540 5.540 21 C 0.225 3.775 22 C 0.021 3.979 23 C -0.131 4.131 24 C -0.130 4.130 25 C -0.133 4.133 26 N -0.323 5.323 27 N -0.465 5.465 28 H 0.454 0.546 29 H 0.018 0.982 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.261 0.739 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.419 0.581 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.091 0.909 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.725 -7.771 -8.967 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.168 3.832 3 H 0.042 0.958 4 C -0.564 4.564 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.207 1.207 10 H -0.220 1.220 11 H -0.184 1.184 12 N -0.835 5.835 13 C -0.058 4.058 14 S 2.814 3.186 15 O -0.999 6.999 16 O -0.982 6.982 17 N -0.878 5.878 18 C 0.072 3.928 19 C -0.001 4.001 20 N -0.270 5.270 21 C -0.057 4.057 22 C 0.018 3.982 23 C -0.189 4.189 24 C -0.188 4.188 25 C -0.191 4.191 26 N -0.152 5.152 27 N -0.185 5.185 28 H 0.303 0.697 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.253 0.747 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.110 0.890 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.790 -7.328 -9.595 19.877 hybrid contribution -0.292 0.091 2.325 2.345 sum 15.498 -7.237 -7.270 18.586 Atomic orbital electron populations 1.21969 0.98048 1.00229 0.99919 1.18407 0.91879 0.91429 0.81462 0.95791 1.21664 1.31401 1.13064 0.90280 0.90474 1.25699 0.95307 0.95604 1.01905 1.70028 1.37566 1.24208 1.24170 0.85575 0.77598 0.79461 0.79021 1.20678 1.22036 1.18388 1.57552 1.64692 1.22780 1.38462 1.21585 1.02741 0.80034 1.01454 1.01020 0.72606 0.72080 0.72943 1.93559 1.84222 1.34864 1.87248 1.93533 1.86197 1.76211 1.42251 1.55789 1.31347 1.15086 1.85565 1.19844 0.81924 0.84491 1.06502 1.24233 0.96414 0.96641 0.82817 1.70329 1.00545 1.24357 1.31732 1.24798 0.94490 0.96983 0.89451 1.19197 0.87270 0.98212 0.93544 1.21769 0.95993 1.02103 0.98993 1.21795 1.03331 0.96133 0.97590 1.21820 1.03429 0.93822 1.00074 1.77968 0.95553 1.26526 1.15170 1.48068 1.04377 1.54821 1.11262 0.69733 0.96245 0.93345 0.91365 0.92942 0.91391 0.90756 0.90210 0.74692 0.86145 0.86578 0.92718 0.89298 0.93141 0.92524 0.89122 0.93094 0.93594 0.88992 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.46 8.95 71.98 0.64 -5.81 16 2 C 0.27 12.45 2.62 44.24 0.12 12.57 16 3 H 0.02 1.28 6.91 -2.39 -0.02 1.26 16 4 C -0.52 -24.50 8.37 25.60 0.21 -24.29 16 5 H 0.08 3.29 7.65 -2.91 -0.02 3.27 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -49.47 11.32 21.45 0.24 -49.23 16 8 Si 0.96 39.07 29.54 68.60 2.03 41.09 16 9 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 12 N -0.99 -36.30 3.12 -520.43 -1.62 -37.93 16 13 C 0.09 2.53 9.90 127.77 1.27 3.80 16 14 S 2.81 100.17 6.14 -56.49 -0.35 99.83 16 15 O -1.01 -44.92 16.70 -128.00 -2.14 -47.06 16 16 O -1.00 -36.68 16.21 -128.00 -2.07 -38.75 16 17 N -1.12 -31.67 6.05 -190.78 -1.15 -32.82 16 18 C 0.20 4.58 6.87 85.63 0.59 5.17 16 19 C 0.28 6.89 7.63 138.23 1.06 7.94 16 20 N -0.54 -14.80 11.19 -179.72 -2.01 -16.81 16 21 C 0.23 5.73 6.36 138.63 0.88 6.61 16 22 C 0.02 0.39 0.99 -52.92 -0.05 0.34 16 23 C -0.13 -2.08 7.93 71.98 0.57 -1.51 16 24 C -0.13 -2.08 8.46 71.98 0.61 -1.47 16 25 C -0.13 -2.33 8.46 71.98 0.61 -1.72 16 26 N -0.32 -8.40 12.06 -51.33 -0.62 -9.02 16 27 N -0.47 -10.70 7.45 -50.70 -0.38 -11.08 16 28 H 0.45 8.16 8.96 -213.10 -1.91 6.25 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 2.00 6.66 -2.39 -0.02 1.99 16 31 H 0.07 3.47 6.07 -2.39 -0.01 3.45 16 32 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 2.22 6.43 -2.39 -0.02 2.21 16 35 H 0.08 2.08 7.02 -2.39 -0.02 2.06 16 36 H 0.42 11.59 8.64 -96.74 -0.84 10.75 16 37 H 0.12 2.60 7.75 -2.38 -0.02 2.58 16 38 H 0.12 2.10 8.14 -2.39 -0.02 2.09 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 45 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -67.94 395.04 -2.88 -70.81 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -1.75 Total: 28.17 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 6.95 Total: 2.78 kcal Atomic # 7 Polarization: -151.33 SS G_CDS: -5.54 Total: -156.88 kcal Atomic # 8 Polarization: -81.60 SS G_CDS: -4.21 Total: -85.81 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.09 kcal Atomic # 16 Polarization: 100.17 SS G_CDS: -0.35 Total: 99.83 kcal Total: -67.94 -2.88 -70.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416539345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.984 kcal (2) G-P(sol) polarization free energy of solvation -67.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.40 seconds