Wall clock time and date at job start Wed Apr 1 2020 04:07:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52997 * 109.46742 * 2 1
4 4 N 1.46497 * 109.47134 * 120.00209 * 2 1 3
5 5 C 1.35501 * 126.98155 * 305.11669 * 4 2 1
6 6 N 1.30520 * 107.30436 * 180.22686 * 5 4 2
7 7 N 1.28592 * 109.67811 * 359.77883 * 6 5 4
8 8 C 1.30523 * 109.67059 * 359.97438 * 7 6 5
9 9 C 1.50705 * 126.34629 * 179.97438 * 8 7 6
10 10 N 1.46501 * 109.47086 * 94.54278 * 9 8 7
11 11 C 1.46497 * 120.00026 * 85.39152 * 10 9 8
12 12 S 1.65597 * 119.99921 * 265.39619 * 10 9 8
13 13 O 1.42104 * 106.40211 * 161.43347 * 12 10 9
14 14 O 1.42103 * 106.40305 * 28.51355 * 12 10 9
15 15 N 1.65600 * 107.21614 * 274.97206 * 12 10 9
16 16 C 1.46498 * 120.00105 * 274.91090 * 15 12 10
17 17 C 1.46504 * 119.99681 * 94.91758 * 15 12 10
18 18 H 1.08999 * 109.47018 * 355.49208 * 17 15 12
19 19 C 1.53002 * 109.46740 * 235.49070 * 17 15 12
20 20 C 1.50703 * 109.46980 * 115.49549 * 17 15 12
21 21 H 1.07997 * 120.00271 * 5.18051 * 20 17 15
22 22 C 1.37875 * 119.99550 * 185.18266 * 20 17 15
23 23 N 1.31517 * 120.00240 * 355.34962 * 22 20 17
24 24 Si 1.86803 * 119.99806 * 175.35228 * 22 20 17
25 25 H 1.48502 * 109.46931 * 269.99880 * 24 22 20
26 26 H 1.48502 * 109.47365 * 29.99771 * 24 22 20
27 27 H 1.48500 * 109.47313 * 149.99958 * 24 22 20
28 28 H 1.08997 * 109.47183 * 65.02802 * 1 2 3
29 29 H 1.09001 * 109.46820 * 185.02356 * 1 2 3
30 30 H 1.08993 * 109.46952 * 305.01648 * 1 2 3
31 31 H 1.09000 * 109.47142 * 240.00239 * 2 1 3
32 32 H 1.09002 * 109.46851 * 179.97438 * 3 2 1
33 33 H 1.08993 * 109.47742 * 300.00175 * 3 2 1
34 34 H 1.09000 * 109.47107 * 60.00217 * 3 2 1
35 35 H 1.07993 * 126.34543 * 0.02562 * 5 4 2
36 36 H 1.08993 * 109.46934 * 334.54651 * 9 8 7
37 37 H 1.08997 * 109.46942 * 214.53933 * 9 8 7
38 38 H 1.09000 * 109.47662 * 270.00696 * 11 10 9
39 39 H 1.09009 * 109.47127 * 30.00201 * 11 10 9
40 40 H 1.09002 * 109.47185 * 150.00186 * 11 10 9
41 41 H 1.08997 * 109.47730 * 270.00475 * 16 15 12
42 42 H 1.09004 * 109.47259 * 30.00353 * 16 15 12
43 43 H 1.08998 * 109.47040 * 150.00332 * 16 15 12
44 44 H 1.08998 * 109.46878 * 304.60653 * 19 17 15
45 45 H 1.09003 * 109.46730 * 64.60285 * 19 17 15
46 46 H 1.09001 * 109.46816 * 184.60405 * 19 17 15
47 47 H 0.96996 * 120.00076 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 1.7030 -0.4119 2.4841
6 7 2.3548 -1.2574 3.2351
7 7 3.0510 -2.0460 2.4955
8 6 2.8746 -1.7399 1.2390
9 6 3.5108 -2.4225 0.0556
10 7 2.6044 -3.4515 -0.4600
11 6 1.5573 -3.0915 -1.4192
12 16 2.7636 -5.0217 0.0415
13 8 1.5335 -5.6659 -0.2602
14 8 3.3137 -4.9710 1.3507
15 7 3.9105 -5.7296 -0.9206
16 6 3.5299 -6.3008 -2.2149
17 6 5.3058 -5.7848 -0.4774
18 1 5.4099 -5.2439 0.4632
19 6 6.2033 -5.1426 -1.5372
20 6 5.7131 -7.2220 -0.2783
21 1 5.0326 -8.0178 -0.5427
22 6 6.9546 -7.5209 0.2416
23 7 7.8179 -6.5573 0.4782
24 14 7.4106 -9.2946 0.6100
25 1 7.0217 -9.6263 2.0043
26 1 6.6964 -10.1949 -0.3306
27 1 8.8761 -9.4727 0.4492
28 1 -0.3633 0.4338 -0.9316
29 1 -0.3633 -1.0237 0.0900
30 1 -0.3633 0.5897 0.8416
31 1 1.8934 -0.5138 -0.8900
32 1 3.1300 1.4425 0.0005
33 1 1.6766 1.9564 -0.8899
34 1 1.6766 1.9563 0.8900
35 1 1.0384 0.3675 2.8260
36 1 4.4482 -2.8853 0.3638
37 1 3.7077 -1.6876 -0.7250
38 1 0.6492 -2.8199 -0.8809
39 1 1.8903 -2.2451 -2.0200
40 1 1.3532 -3.9414 -2.0704
41 1 3.2561 -7.3476 -2.0837
42 1 2.6800 -5.7509 -2.6189
43 1 4.3705 -6.2289 -2.9051
44 1 6.0384 -5.6312 -2.4974
45 1 5.9632 -4.0828 -1.6227
46 1 7.2476 -5.2563 -1.2462
47 1 8.6914 -6.7677 0.8436
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000490630091.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:07:19
Heat of formation + Delta-G solvation = 17.647969 kcal
Electronic energy + Delta-G solvation = -30614.606278 eV
Core-core repulsion = 26575.739858 eV
Total energy + Delta-G solvation = -4038.866420 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.162 amu
Computer time = 3.95 seconds
Orbital eigenvalues (eV)
-43.10091 -37.08638 -36.69040 -36.27494 -36.14208 -35.12212 -32.53775 -31.82013
-31.02003 -29.10240 -27.94575 -27.70288 -25.70552 -25.15184 -24.87227 -23.86916
-21.57316 -20.71599 -20.44387 -18.48915 -17.54601 -17.21441 -16.84106 -16.51928
-16.14248 -15.63937 -15.43637 -14.96217 -14.90468 -14.56163 -14.16278 -13.73819
-13.46389 -13.40894 -13.31009 -13.06129 -12.86594 -12.80879 -12.77111 -12.34124
-12.01387 -11.97333 -11.74647 -11.64695 -11.37509 -11.32711 -11.23419 -11.16218
-11.13274 -10.96113 -10.74857 -10.44573 -10.26893 -10.21191 -10.18001 -9.98641
-9.35870 -9.21805 -9.13844 -8.42186 -7.95601 -6.03312 -4.09231 1.06962
1.82481 2.35045 2.99578 3.34239 3.41059 3.42674 3.46772 3.99980
4.06985 4.27232 4.34099 4.41478 4.45406 4.48658 4.71702 4.76825
4.95002 5.03305 5.10650 5.13614 5.19508 5.28347 5.30484 5.40720
5.44761 5.51303 5.54162 5.60434 5.66696 5.79087 5.98290 6.09232
6.19675 6.32590 6.46115 6.60571 6.72356 6.79516 6.85336 7.02471
7.45209 7.63575 7.82533 8.04640 8.30476 8.88406 8.93018 9.56705
11.02735
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.017284 B = 0.003640 C = 0.003425
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1619.610770 B = 7690.393601 C = 8172.399142
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.123 3.877
3 C -0.163 4.163
4 N -0.466 5.466
5 C 0.144 3.856
6 N -0.298 5.298
7 N -0.253 5.253
8 C 0.156 3.844
9 C 0.215 3.785
10 N -1.011 6.011
11 C 0.092 3.908
12 S 2.767 3.233
13 O -0.992 6.992
14 O -0.943 6.943
15 N -0.988 5.988
16 C 0.108 3.892
17 C 0.265 3.735
18 H 0.065 0.935
19 C -0.146 4.146
20 C -0.522 4.522
21 H 0.061 0.939
22 C 0.065 3.935
23 N -0.888 5.888
24 Si 0.896 3.104
25 H -0.278 1.278
26 H -0.274 1.274
27 H -0.286 1.286
28 H 0.081 0.919
29 H 0.068 0.932
30 H 0.066 0.934
31 H 0.106 0.894
32 H 0.066 0.934
33 H 0.080 0.920
34 H 0.066 0.934
35 H 0.212 0.788
36 H 0.122 0.878
37 H 0.094 0.906
38 H 0.049 0.951
39 H 0.067 0.933
40 H 0.077 0.923
41 H 0.049 0.951
42 H 0.044 0.956
43 H 0.073 0.927
44 H 0.033 0.967
45 H 0.010 0.990
46 H 0.091 0.909
47 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.869 17.855 -8.488 23.589
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.020 3.980
3 C -0.221 4.221
4 N -0.159 5.159
5 C -0.143 4.143
6 N -0.138 5.138
7 N -0.094 5.094
8 C -0.113 4.113
9 C 0.086 3.914
10 N -0.847 5.847
11 C -0.053 4.053
12 S 2.777 3.223
13 O -0.976 6.976
14 O -0.926 6.926
15 N -0.831 5.831
16 C -0.038 4.038
17 C 0.162 3.838
18 H 0.082 0.918
19 C -0.205 4.205
20 C -0.561 4.561
21 H 0.079 0.921
22 C -0.137 4.137
23 N -0.526 5.526
24 Si 0.724 3.276
25 H -0.204 1.204
26 H -0.199 1.199
27 H -0.212 1.212
28 H 0.100 0.900
29 H 0.087 0.913
30 H 0.085 0.915
31 H 0.124 0.876
32 H 0.086 0.914
33 H 0.098 0.902
34 H 0.085 0.915
35 H 0.228 0.772
36 H 0.140 0.860
37 H 0.112 0.888
38 H 0.067 0.933
39 H 0.085 0.915
40 H 0.095 0.905
41 H 0.068 0.932
42 H 0.063 0.937
43 H 0.091 0.909
44 H 0.052 0.948
45 H 0.029 0.971
46 H 0.109 0.891
47 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -12.676 16.781 -6.497 22.011
hybrid contribution -0.148 0.053 -1.244 1.254
sum -12.823 16.833 -7.741 22.533
Atomic orbital electron populations
1.22206 0.92696 1.03658 1.03661 1.21605 0.95950 0.94089 0.86390
1.22194 1.02460 0.93883 1.03545 1.46539 1.35234 1.25922 1.08182
1.26265 1.04092 1.03495 0.80461 1.74365 1.08451 1.04133 1.26835
1.74559 1.17677 1.18446 0.98695 1.25522 0.96767 0.91009 0.98043
1.19449 0.92031 0.90646 0.89305 1.58493 1.42398 1.26305 1.57541
1.21511 0.89954 1.02004 0.91877 1.02615 0.73146 0.72383 0.74182
1.93532 1.44854 1.73392 1.85850 1.93701 1.78869 1.85387 1.34681
1.57841 1.23555 1.70171 1.31575 1.21167 0.99124 0.98147 0.85397
1.18805 0.73487 0.97550 0.93921 0.91770 1.22118 1.04214 0.95396
0.98786 1.21317 1.00448 0.91673 1.42691 0.92060 1.24893 0.96165
0.97513 0.95162 1.69861 1.06961 1.31673 1.44110 0.86535 0.77337
0.84745 0.79019 1.20441 1.19937 1.21232 0.90049 0.91331 0.91451
0.87623 0.91448 0.90155 0.91521 0.77183 0.85979 0.88788 0.93265
0.91467 0.90454 0.93208 0.93710 0.90853 0.94754 0.97070 0.89086
0.92675
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.83 9.12 37.16 0.34 -0.49 16
2 C 0.12 0.80 3.56 -67.93 -0.24 0.56 16
3 C -0.16 -0.77 9.32 37.16 0.35 -0.42 16
4 N -0.47 -5.17 2.60 -108.21 -0.28 -5.45 16
5 C 0.14 1.73 11.92 -89.94 -1.07 0.66 16
6 N -0.30 -5.21 12.21 29.69 0.36 -4.84 16
7 N -0.25 -4.97 12.21 32.80 0.40 -4.57 16
8 C 0.16 2.37 7.61 -154.98 -1.18 1.19 16
9 C 0.21 2.96 5.43 -5.19 -0.03 2.93 16
10 N -1.01 -14.78 3.22 -123.05 -0.40 -15.17 16
11 C 0.09 0.96 9.69 59.85 0.58 1.54 16
12 S 2.77 55.88 5.94 -107.50 -0.64 55.25 16
13 O -0.99 -21.22 16.30 -57.17 -0.93 -22.16 16
14 O -0.94 -23.14 15.77 -57.17 -0.90 -24.04 16
15 N -0.99 -20.27 3.12 -115.85 -0.36 -20.63 16
16 C 0.11 1.86 9.69 59.85 0.58 2.44 16
17 C 0.27 6.39 2.56 -69.08 -0.18 6.22 16
18 H 0.06 1.73 6.87 -51.93 -0.36 1.37 16
19 C -0.15 -3.15 9.06 37.16 0.34 -2.82 16
20 C -0.52 -14.14 8.40 -34.44 -0.29 -14.43 16
21 H 0.06 1.67 7.72 -52.49 -0.41 1.26 16
22 C 0.07 1.79 5.35 -17.82 -0.10 1.70 16
23 N -0.89 -24.84 11.51 55.43 0.64 -24.20 16
24 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16
25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
26 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16
27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16
29 H 0.07 0.47 7.69 -51.93 -0.40 0.07 16
30 H 0.07 0.30 8.04 -51.93 -0.42 -0.12 16
31 H 0.11 0.60 5.28 -51.93 -0.27 0.33 16
32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
33 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16
34 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16
35 H 0.21 1.52 8.06 -52.49 -0.42 1.10 16
36 H 0.12 1.95 7.76 -51.93 -0.40 1.55 16
37 H 0.09 0.87 7.30 -51.93 -0.38 0.49 16
38 H 0.05 0.49 7.69 -51.93 -0.40 0.09 16
39 H 0.07 0.45 6.95 -51.92 -0.36 0.09 16
40 H 0.08 0.80 7.32 -51.93 -0.38 0.42 16
41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
42 H 0.04 0.62 7.58 -51.93 -0.39 0.23 16
43 H 0.07 1.19 6.11 -51.93 -0.32 0.88 16
44 H 0.03 0.69 6.33 -51.93 -0.33 0.36 16
45 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16
46 H 0.09 2.22 6.22 -51.93 -0.32 1.90 16
47 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16
LS Contribution 389.45 15.07 5.87 5.87
Total: -1.00 -37.35 389.45 -9.39 -46.75
By element:
Atomic # 1 Polarization: 4.87 SS G_CDS: -7.23 Total: -2.36 kcal
Atomic # 6 Polarization: -0.03 SS G_CDS: -0.90 Total: -0.93 kcal
Atomic # 7 Polarization: -75.24 SS G_CDS: 0.36 Total: -74.88 kcal
Atomic # 8 Polarization: -44.36 SS G_CDS: -1.83 Total: -46.19 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal
Atomic # 16 Polarization: 55.88 SS G_CDS: -0.64 Total: 55.25 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -37.35 -9.39 -46.75 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000490630091.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.394 kcal
(2) G-P(sol) polarization free energy of solvation -37.354 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.039 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.746 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.648 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.96 seconds