Wall clock time and date at job start Wed Apr 1 2020 04:05:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08993 * 109.47650 * 2 1
4 4 C 1.50703 * 109.47348 * 239.99485 * 2 1 3
5 5 H 1.07996 * 119.99847 * 240.00686 * 4 2 1
6 6 C 1.37874 * 119.99516 * 60.00276 * 4 2 1
7 7 N 1.31516 * 120.00348 * 0.02562 * 6 4 2
8 8 Si 1.86809 * 119.99755 * 180.02562 * 6 4 2
9 9 H 1.48497 * 109.47096 * 90.00205 * 8 6 4
10 10 H 1.48497 * 109.47063 * 210.00312 * 8 6 4
11 11 H 1.48498 * 109.46742 * 329.99990 * 8 6 4
12 12 N 1.46504 * 109.46768 * 119.99804 * 2 1 3
13 13 C 1.46501 * 119.99864 * 60.00059 * 12 2 1
14 14 C 1.34768 * 120.00165 * 239.99840 * 12 2 1
15 15 O 1.21287 * 120.00115 * 359.97438 * 14 12 2
16 16 C 1.50699 * 120.00498 * 179.97438 * 14 12 2
17 17 H 1.09000 * 109.47343 * 305.00314 * 16 14 12
18 18 C 1.53005 * 109.46953 * 65.00184 * 16 14 12
19 19 O 1.42897 * 109.47767 * 185.00019 * 16 14 12
20 20 C 1.35835 * 117.00530 * 155.13554 * 19 16 14
21 21 C 1.38596 * 120.11294 * 5.41567 * 20 19 16
22 22 C 1.38181 * 120.05973 * 179.97438 * 21 20 19
23 23 C 1.38380 * 120.29360 * 0.02562 * 22 21 20
24 24 C 1.38017 * 120.23767 * 359.97438 * 23 22 21
25 25 C 1.39273 * 119.93164 * 359.74089 * 24 23 22
26 26 C 1.48398 * 120.14168 * 180.27662 * 25 24 23
27 27 N 1.34067 * 126.67173 * 179.97438 * 26 25 24
28 28 N 1.28990 * 107.26490 * 179.83809 * 27 26 25
29 29 N 1.28736 * 108.94735 * 0.43202 * 28 27 26
30 30 H 0.97001 * 125.33762 * 179.73815 * 29 28 27
31 31 N 1.28868 * 109.32231 * 359.72764 * 29 28 27
32 32 H 1.08996 * 109.46704 * 300.00705 * 1 2 3
33 33 H 1.09001 * 109.46268 * 60.00113 * 1 2 3
34 34 H 1.08993 * 109.47164 * 180.02562 * 1 2 3
35 35 H 0.96997 * 119.99686 * 180.02562 * 7 6 4
36 36 H 1.09000 * 109.47568 * 89.99762 * 13 12 2
37 37 H 1.09005 * 109.47153 * 210.00205 * 13 12 2
38 38 H 1.09001 * 109.47035 * 329.99684 * 13 12 2
39 39 H 1.09000 * 109.46989 * 59.99913 * 18 16 14
40 40 H 1.08994 * 109.47458 * 180.02562 * 18 16 14
41 41 H 1.09003 * 109.47103 * 300.00554 * 18 16 14
42 42 H 1.08002 * 119.97521 * 0.02562 * 21 20 19
43 43 H 1.08001 * 119.85274 * 180.02562 * 22 21 20
44 44 H 1.08005 * 119.87865 * 179.97438 * 23 22 21
45 45 H 1.07997 * 120.02992 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8935 1.0276 0.0000
4 6 2.0325 -0.7105 -1.2304
5 1 2.6533 -1.5886 -1.1312
6 6 1.6994 -0.2395 -2.4826
7 7 0.9437 0.8301 -2.6034
8 14 2.3215 -1.1206 -4.0079
9 1 1.3429 -2.1619 -4.4118
10 1 2.4869 -0.1417 -5.1122
11 1 3.6294 -1.7586 -3.7120
12 7 2.0183 -0.6906 1.1963
13 6 1.6643 -2.0932 1.4281
14 6 2.7931 -0.0357 2.0834
15 8 3.0866 1.1253 1.8912
16 6 3.2949 -0.7458 3.3142
17 1 2.4506 -1.1649 3.8616
18 6 4.2448 -1.8721 2.9015
19 8 3.9906 0.1819 4.1492
20 6 4.0548 -0.1090 5.4745
21 6 3.5606 -1.3148 5.9464
22 6 3.6269 -1.6098 7.2947
23 6 4.1855 -0.7053 8.1806
24 6 4.6814 0.4990 7.7239
25 6 4.6248 0.8038 6.3661
26 6 5.1622 2.0947 5.8691
27 7 5.1760 2.5200 4.5978
28 7 5.7234 3.6880 4.5907
29 7 6.0566 4.0007 5.7942
30 1 6.4898 4.8270 6.0597
31 7 5.7241 3.0441 6.5910
32 1 -0.3632 0.5139 0.8899
33 1 -0.3632 0.5138 -0.8900
34 1 -0.3633 -1.0276 0.0005
35 1 0.7092 1.1612 -3.4844
36 1 2.4156 -2.7378 0.9718
37 1 1.6236 -2.2852 2.5003
38 1 0.6903 -2.3001 0.9847
39 1 5.0891 -1.4530 2.3542
40 1 4.6074 -2.3861 3.7917
41 1 3.7142 -2.5798 2.2646
42 1 3.1239 -2.0248 5.2597
43 1 3.2411 -2.5506 7.6588
44 1 4.2335 -0.9426 9.2331
45 1 5.1162 1.2027 8.4182
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000736184371.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:05:44
Heat of formation + Delta-G solvation = 97.665438 kcal
Electronic energy + Delta-G solvation = -30518.439487 eV
Core-core repulsion = 26347.598934 eV
Total energy + Delta-G solvation = -4170.840554 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 2.67 seconds
Orbital eigenvalues (eV)
-44.27938 -40.56961 -39.03356 -37.31590 -35.24508 -34.30699 -33.57681 -33.14150
-31.67976 -30.67804 -29.86368 -28.91992 -26.30821 -25.22692 -24.84863 -24.56243
-24.11872 -22.46534 -21.67931 -20.71047 -19.26793 -18.50298 -18.15439 -16.99325
-16.70046 -16.49564 -16.04425 -15.77047 -15.43730 -15.05169 -14.60019 -14.47343
-14.24600 -14.13678 -13.69995 -13.34192 -13.22933 -12.81133 -12.60830 -12.27103
-12.19363 -12.12834 -11.78772 -11.69588 -11.53547 -11.45753 -11.19517 -11.11216
-11.05382 -10.92655 -10.88752 -10.81614 -10.71896 -10.67765 -10.23539 -10.13999
-9.15391 -9.02766 -8.81495 -8.40198 -8.20357 -7.58100 -6.04561 -4.12529
0.64110 1.22643 1.34144 2.32301 2.43639 2.92096 3.28069 3.33649
3.36222 3.39787 3.64181 3.74970 4.06796 4.25902 4.41919 4.65083
4.75276 4.81969 4.99806 5.02937 5.10380 5.18964 5.26780 5.35540
5.37542 5.58606 5.62773 5.67917 5.69587 5.74177 5.99665 6.07604
6.12663 6.16796 6.26090 6.32207 6.46551 6.52871 6.77656 6.83097
7.06485 7.30079 7.47722 7.55503 7.73391 8.04128 8.21319 8.34699
8.51374 8.86190 9.06836 9.53839 11.00801
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.014285 B = 0.003004 C = 0.002650
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1959.568539 B = 9318.776756 C =10562.052861
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.260 3.740
3 H 0.065 0.935
4 C -0.524 4.524
5 H 0.059 0.941
6 C 0.064 3.936
7 N -0.887 5.887
8 Si 0.898 3.102
9 H -0.281 1.281
10 H -0.286 1.286
11 H -0.274 1.274
12 N -0.590 5.590
13 C 0.082 3.918
14 C 0.507 3.493
15 O -0.514 6.514
16 C 0.063 3.937
17 H 0.091 0.909
18 C -0.181 4.181
19 O -0.253 6.253
20 C 0.178 3.822
21 C -0.219 4.219
22 C -0.057 4.057
23 C -0.169 4.169
24 C -0.041 4.041
25 C -0.056 4.056
26 C 0.219 3.781
27 N -0.222 5.222
28 N -0.052 5.052
29 N -0.238 5.238
30 H 0.471 0.529
31 N -0.307 5.307
32 H 0.011 0.989
33 H 0.094 0.906
34 H 0.030 0.970
35 H 0.263 0.737
36 H 0.053 0.947
37 H 0.049 0.951
38 H 0.075 0.925
39 H 0.075 0.925
40 H 0.067 0.933
41 H 0.088 0.912
42 H 0.139 0.861
43 H 0.129 0.871
44 H 0.129 0.871
45 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.255 -4.380 22.430 23.694
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.161 3.839
3 H 0.083 0.917
4 C -0.563 4.563
5 H 0.078 0.922
6 C -0.138 4.138
7 N -0.526 5.526
8 Si 0.726 3.274
9 H -0.207 1.207
10 H -0.211 1.211
11 H -0.199 1.199
12 N -0.324 5.324
13 C -0.062 4.062
14 C 0.291 3.709
15 O -0.389 6.389
16 C 0.003 3.997
17 H 0.109 0.891
18 C -0.238 4.238
19 O -0.163 6.163
20 C 0.127 3.873
21 C -0.238 4.238
22 C -0.076 4.076
23 C -0.187 4.187
24 C -0.062 4.062
25 C -0.060 4.060
26 C -0.060 4.060
27 N -0.095 5.095
28 N -0.048 5.048
29 N -0.082 5.082
30 H 0.324 0.676
31 N -0.160 5.160
32 H 0.031 0.969
33 H 0.113 0.887
34 H 0.049 0.951
35 H 0.073 0.927
36 H 0.072 0.928
37 H 0.068 0.932
38 H 0.094 0.906
39 H 0.094 0.906
40 H 0.086 0.914
41 H 0.106 0.894
42 H 0.156 0.844
43 H 0.147 0.853
44 H 0.147 0.853
45 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges 6.544 -2.990 21.536 22.706
hybrid contribution 0.333 -0.565 -0.364 0.750
sum 6.878 -3.555 21.172 22.543
Atomic orbital electron populations
1.22104 0.98202 0.99340 1.00935 1.18960 0.90783 0.94608 0.79564
0.91735 1.21305 1.31815 1.12967 0.90228 0.92238 1.24891 0.94989
0.94959 0.98952 1.69879 1.36412 1.22535 1.23741 0.86495 0.79171
0.79270 0.82453 1.20669 1.21129 1.19920 1.48139 1.49136 1.11569
1.23567 1.21708 1.01890 0.83547 0.99035 1.19750 0.80018 0.87322
0.83815 1.90750 1.56318 1.16258 1.75557 1.22431 0.95492 0.90048
0.91772 0.89107 1.22450 1.00817 0.97605 1.02936 1.86483 1.69533
1.46753 1.13518 1.19041 0.92213 0.91995 0.84003 1.21303 1.07673
0.97340 0.97470 1.21100 0.95302 0.98874 0.92299 1.20937 1.03153
0.94494 1.00136 1.20980 0.95915 0.96723 0.92540 1.16523 1.07573
0.89477 0.92457 1.23437 0.99732 0.95706 0.87120 1.76594 1.13626
1.01378 1.17879 1.79102 1.11249 1.09996 1.04450 1.47748 1.40022
1.16978 1.03487 0.67556 1.74788 1.19263 0.99033 1.22888 0.96947
0.88727 0.95081 0.92690 0.92848 0.93199 0.90586 0.90589 0.91379
0.89380 0.84373 0.85287 0.85271 0.84512
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.52 8.95 37.16 0.33 -3.18 16
2 C 0.26 6.68 2.64 -69.08 -0.18 6.50 16
3 H 0.06 1.95 6.90 -51.93 -0.36 1.59 16
4 C -0.52 -14.14 8.37 -34.44 -0.29 -14.43 16
5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16
6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16
7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16
8 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16
9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
12 N -0.59 -12.48 2.75 -175.25 -0.48 -12.96 16
13 C 0.08 1.30 8.16 59.85 0.49 1.79 16
14 C 0.51 10.87 7.10 -10.99 -0.08 10.79 16
15 O -0.51 -13.59 15.84 -14.31 -0.23 -13.82 16
16 C 0.06 1.00 1.83 -27.88 -0.05 0.94 16
17 H 0.09 1.18 5.31 -51.93 -0.28 0.90 16
18 C -0.18 -2.38 8.89 37.16 0.33 -2.05 16
19 O -0.25 -4.43 7.68 -39.08 -0.30 -4.73 16
20 C 0.18 2.52 6.60 -38.88 -0.26 2.26 16
21 C -0.22 -2.34 8.24 -39.47 -0.33 -2.67 16
22 C -0.06 -0.48 10.03 -39.55 -0.40 -0.87 16
23 C -0.17 -1.40 10.03 -39.61 -0.40 -1.80 16
24 C -0.04 -0.42 9.70 -39.28 -0.38 -0.80 16
25 C -0.06 -0.77 5.89 -104.76 -0.62 -1.39 16
26 C 0.22 3.38 7.91 -156.30 -1.24 2.15 16
27 N -0.22 -4.08 11.06 32.15 0.36 -3.72 16
28 N -0.05 -0.82 13.47 60.35 0.81 0.00 16
29 N -0.24 -2.63 7.90 60.35 0.48 -2.15 16
30 H 0.47 2.65 8.96 -340.36 -3.05 -0.40 16
31 N -0.31 -3.89 12.08 32.16 0.39 -3.51 16
32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16
33 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16
34 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16
35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16
36 H 0.05 0.80 7.02 -51.93 -0.36 0.43 16
37 H 0.05 0.59 6.07 -51.93 -0.32 0.28 16
38 H 0.08 1.22 6.43 -51.93 -0.33 0.88 16
39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16
40 H 0.07 0.71 6.90 -51.93 -0.36 0.35 16
41 H 0.09 1.06 5.12 -51.93 -0.27 0.79 16
42 H 0.14 1.25 5.42 -52.49 -0.28 0.96 16
43 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16
44 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16
45 H 0.14 1.18 7.88 -52.49 -0.41 0.76 16
LS Contribution 369.70 15.07 5.57 5.57
Total: -1.00 -36.34 369.70 -8.86 -45.20
By element:
Atomic # 1 Polarization: 7.69 SS G_CDS: -7.91 Total: -0.22 kcal
Atomic # 6 Polarization: 2.05 SS G_CDS: -3.15 Total: -1.10 kcal
Atomic # 7 Polarization: -49.18 SS G_CDS: 2.18 Total: -47.00 kcal
Atomic # 8 Polarization: -18.02 SS G_CDS: -0.53 Total: -18.55 kcal
Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -36.34 -8.86 -45.20 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000736184371.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 142.863 kcal
(2) G-P(sol) polarization free energy of solvation -36.339 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.524 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.198 kcal
(6) G-S(sol) free energy of system = (1) + (5) 97.665 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.67 seconds