Wall clock time and date at job start Wed Apr 1 2020 04:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47650 * 2 1 4 4 C 1.50703 * 109.47348 * 239.99485 * 2 1 3 5 5 H 1.07996 * 119.99847 * 240.00686 * 4 2 1 6 6 C 1.37874 * 119.99516 * 60.00276 * 4 2 1 7 7 N 1.31516 * 120.00348 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99755 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47096 * 90.00205 * 8 6 4 10 10 H 1.48497 * 109.47063 * 210.00312 * 8 6 4 11 11 H 1.48498 * 109.46742 * 329.99990 * 8 6 4 12 12 N 1.46504 * 109.46768 * 119.99804 * 2 1 3 13 13 C 1.46501 * 119.99864 * 60.00059 * 12 2 1 14 14 C 1.34768 * 120.00165 * 239.99840 * 12 2 1 15 15 O 1.21287 * 120.00115 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00498 * 179.97438 * 14 12 2 17 17 H 1.09000 * 109.47343 * 305.00314 * 16 14 12 18 18 C 1.53005 * 109.46953 * 65.00184 * 16 14 12 19 19 O 1.42897 * 109.47767 * 185.00019 * 16 14 12 20 20 C 1.35835 * 117.00530 * 155.13554 * 19 16 14 21 21 C 1.38596 * 120.11294 * 5.41567 * 20 19 16 22 22 C 1.38181 * 120.05973 * 179.97438 * 21 20 19 23 23 C 1.38380 * 120.29360 * 0.02562 * 22 21 20 24 24 C 1.38017 * 120.23767 * 359.97438 * 23 22 21 25 25 C 1.39273 * 119.93164 * 359.74089 * 24 23 22 26 26 C 1.48398 * 120.14168 * 180.27662 * 25 24 23 27 27 N 1.34067 * 126.67173 * 179.97438 * 26 25 24 28 28 N 1.28990 * 107.26490 * 179.83809 * 27 26 25 29 29 N 1.28736 * 108.94735 * 0.43202 * 28 27 26 30 30 H 0.97001 * 125.33762 * 179.73815 * 29 28 27 31 31 N 1.28868 * 109.32231 * 359.72764 * 29 28 27 32 32 H 1.08996 * 109.46704 * 300.00705 * 1 2 3 33 33 H 1.09001 * 109.46268 * 60.00113 * 1 2 3 34 34 H 1.08993 * 109.47164 * 180.02562 * 1 2 3 35 35 H 0.96997 * 119.99686 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47568 * 89.99762 * 13 12 2 37 37 H 1.09005 * 109.47153 * 210.00205 * 13 12 2 38 38 H 1.09001 * 109.47035 * 329.99684 * 13 12 2 39 39 H 1.09000 * 109.46989 * 59.99913 * 18 16 14 40 40 H 1.08994 * 109.47458 * 180.02562 * 18 16 14 41 41 H 1.09003 * 109.47103 * 300.00554 * 18 16 14 42 42 H 1.08002 * 119.97521 * 0.02562 * 21 20 19 43 43 H 1.08001 * 119.85274 * 180.02562 * 22 21 20 44 44 H 1.08005 * 119.87865 * 179.97438 * 23 22 21 45 45 H 1.07997 * 120.02992 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0325 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1206 -4.0079 9 1 1.3429 -2.1619 -4.4118 10 1 2.4869 -0.1417 -5.1122 11 1 3.6294 -1.7586 -3.7120 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0357 2.0834 15 8 3.0866 1.1253 1.8912 16 6 3.2949 -0.7458 3.3142 17 1 2.4506 -1.1649 3.8616 18 6 4.2448 -1.8721 2.9015 19 8 3.9906 0.1819 4.1492 20 6 4.0548 -0.1090 5.4745 21 6 3.5606 -1.3148 5.9464 22 6 3.6269 -1.6098 7.2947 23 6 4.1855 -0.7053 8.1806 24 6 4.6814 0.4990 7.7239 25 6 4.6248 0.8038 6.3661 26 6 5.1622 2.0947 5.8691 27 7 5.1760 2.5200 4.5978 28 7 5.7234 3.6880 4.5907 29 7 6.0566 4.0007 5.7942 30 1 6.4898 4.8270 6.0597 31 7 5.7241 3.0441 6.5910 32 1 -0.3632 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 0.7092 1.1612 -3.4844 36 1 2.4156 -2.7378 0.9718 37 1 1.6236 -2.2852 2.5003 38 1 0.6903 -2.3001 0.9847 39 1 5.0891 -1.4530 2.3542 40 1 4.6074 -2.3861 3.7917 41 1 3.7142 -2.5798 2.2646 42 1 3.1239 -2.0248 5.2597 43 1 3.2411 -2.5506 7.6588 44 1 4.2335 -0.9426 9.2331 45 1 5.1162 1.2027 8.4182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736184371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:44 Heat of formation + Delta-G solvation = 97.665438 kcal Electronic energy + Delta-G solvation = -30518.439487 eV Core-core repulsion = 26347.598934 eV Total energy + Delta-G solvation = -4170.840554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -44.27938 -40.56961 -39.03356 -37.31590 -35.24508 -34.30699 -33.57681 -33.14150 -31.67976 -30.67804 -29.86368 -28.91992 -26.30821 -25.22692 -24.84863 -24.56243 -24.11872 -22.46534 -21.67931 -20.71047 -19.26793 -18.50298 -18.15439 -16.99325 -16.70046 -16.49564 -16.04425 -15.77047 -15.43730 -15.05169 -14.60019 -14.47343 -14.24600 -14.13678 -13.69995 -13.34192 -13.22933 -12.81133 -12.60830 -12.27103 -12.19363 -12.12834 -11.78772 -11.69588 -11.53547 -11.45753 -11.19517 -11.11216 -11.05382 -10.92655 -10.88752 -10.81614 -10.71896 -10.67765 -10.23539 -10.13999 -9.15391 -9.02766 -8.81495 -8.40198 -8.20357 -7.58100 -6.04561 -4.12529 0.64110 1.22643 1.34144 2.32301 2.43639 2.92096 3.28069 3.33649 3.36222 3.39787 3.64181 3.74970 4.06796 4.25902 4.41919 4.65083 4.75276 4.81969 4.99806 5.02937 5.10380 5.18964 5.26780 5.35540 5.37542 5.58606 5.62773 5.67917 5.69587 5.74177 5.99665 6.07604 6.12663 6.16796 6.26090 6.32207 6.46551 6.52871 6.77656 6.83097 7.06485 7.30079 7.47722 7.55503 7.73391 8.04128 8.21319 8.34699 8.51374 8.86190 9.06836 9.53839 11.00801 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.003004 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.568539 B = 9318.776756 C =10562.052861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.260 3.740 3 H 0.065 0.935 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.590 5.590 13 C 0.082 3.918 14 C 0.507 3.493 15 O -0.514 6.514 16 C 0.063 3.937 17 H 0.091 0.909 18 C -0.181 4.181 19 O -0.253 6.253 20 C 0.178 3.822 21 C -0.219 4.219 22 C -0.057 4.057 23 C -0.169 4.169 24 C -0.041 4.041 25 C -0.056 4.056 26 C 0.219 3.781 27 N -0.222 5.222 28 N -0.052 5.052 29 N -0.238 5.238 30 H 0.471 0.529 31 N -0.307 5.307 32 H 0.011 0.989 33 H 0.094 0.906 34 H 0.030 0.970 35 H 0.263 0.737 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.139 0.861 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.255 -4.380 22.430 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.324 5.324 13 C -0.062 4.062 14 C 0.291 3.709 15 O -0.389 6.389 16 C 0.003 3.997 17 H 0.109 0.891 18 C -0.238 4.238 19 O -0.163 6.163 20 C 0.127 3.873 21 C -0.238 4.238 22 C -0.076 4.076 23 C -0.187 4.187 24 C -0.062 4.062 25 C -0.060 4.060 26 C -0.060 4.060 27 N -0.095 5.095 28 N -0.048 5.048 29 N -0.082 5.082 30 H 0.324 0.676 31 N -0.160 5.160 32 H 0.031 0.969 33 H 0.113 0.887 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.156 0.844 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.544 -2.990 21.536 22.706 hybrid contribution 0.333 -0.565 -0.364 0.750 sum 6.878 -3.555 21.172 22.543 Atomic orbital electron populations 1.22104 0.98202 0.99340 1.00935 1.18960 0.90783 0.94608 0.79564 0.91735 1.21305 1.31815 1.12967 0.90228 0.92238 1.24891 0.94989 0.94959 0.98952 1.69879 1.36412 1.22535 1.23741 0.86495 0.79171 0.79270 0.82453 1.20669 1.21129 1.19920 1.48139 1.49136 1.11569 1.23567 1.21708 1.01890 0.83547 0.99035 1.19750 0.80018 0.87322 0.83815 1.90750 1.56318 1.16258 1.75557 1.22431 0.95492 0.90048 0.91772 0.89107 1.22450 1.00817 0.97605 1.02936 1.86483 1.69533 1.46753 1.13518 1.19041 0.92213 0.91995 0.84003 1.21303 1.07673 0.97340 0.97470 1.21100 0.95302 0.98874 0.92299 1.20937 1.03153 0.94494 1.00136 1.20980 0.95915 0.96723 0.92540 1.16523 1.07573 0.89477 0.92457 1.23437 0.99732 0.95706 0.87120 1.76594 1.13626 1.01378 1.17879 1.79102 1.11249 1.09996 1.04450 1.47748 1.40022 1.16978 1.03487 0.67556 1.74788 1.19263 0.99033 1.22888 0.96947 0.88727 0.95081 0.92690 0.92848 0.93199 0.90586 0.90589 0.91379 0.89380 0.84373 0.85287 0.85271 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.95 37.16 0.33 -3.18 16 2 C 0.26 6.68 2.64 -69.08 -0.18 6.50 16 3 H 0.06 1.95 6.90 -51.93 -0.36 1.59 16 4 C -0.52 -14.14 8.37 -34.44 -0.29 -14.43 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.59 -12.48 2.75 -175.25 -0.48 -12.96 16 13 C 0.08 1.30 8.16 59.85 0.49 1.79 16 14 C 0.51 10.87 7.10 -10.99 -0.08 10.79 16 15 O -0.51 -13.59 15.84 -14.31 -0.23 -13.82 16 16 C 0.06 1.00 1.83 -27.88 -0.05 0.94 16 17 H 0.09 1.18 5.31 -51.93 -0.28 0.90 16 18 C -0.18 -2.38 8.89 37.16 0.33 -2.05 16 19 O -0.25 -4.43 7.68 -39.08 -0.30 -4.73 16 20 C 0.18 2.52 6.60 -38.88 -0.26 2.26 16 21 C -0.22 -2.34 8.24 -39.47 -0.33 -2.67 16 22 C -0.06 -0.48 10.03 -39.55 -0.40 -0.87 16 23 C -0.17 -1.40 10.03 -39.61 -0.40 -1.80 16 24 C -0.04 -0.42 9.70 -39.28 -0.38 -0.80 16 25 C -0.06 -0.77 5.89 -104.76 -0.62 -1.39 16 26 C 0.22 3.38 7.91 -156.30 -1.24 2.15 16 27 N -0.22 -4.08 11.06 32.15 0.36 -3.72 16 28 N -0.05 -0.82 13.47 60.35 0.81 0.00 16 29 N -0.24 -2.63 7.90 60.35 0.48 -2.15 16 30 H 0.47 2.65 8.96 -340.36 -3.05 -0.40 16 31 N -0.31 -3.89 12.08 32.16 0.39 -3.51 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 34 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.05 0.80 7.02 -51.93 -0.36 0.43 16 37 H 0.05 0.59 6.07 -51.93 -0.32 0.28 16 38 H 0.08 1.22 6.43 -51.93 -0.33 0.88 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 0.71 6.90 -51.93 -0.36 0.35 16 41 H 0.09 1.06 5.12 -51.93 -0.27 0.79 16 42 H 0.14 1.25 5.42 -52.49 -0.28 0.96 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 45 H 0.14 1.18 7.88 -52.49 -0.41 0.76 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -36.34 369.70 -8.86 -45.20 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.91 Total: -0.22 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -3.15 Total: -1.10 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 2.18 Total: -47.00 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.53 Total: -18.55 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.34 -8.86 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736184371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.863 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds