Wall clock time and date at job start Wed Apr 1 2020 04:05:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08993 * 109.47650 * 2 1
4 4 C 1.50703 * 109.47348 * 239.99485 * 2 1 3
5 5 H 1.07996 * 119.99847 * 240.00686 * 4 2 1
6 6 C 1.37874 * 119.99516 * 60.00276 * 4 2 1
7 7 N 1.31516 * 120.00348 * 0.02562 * 6 4 2
8 8 Si 1.86809 * 119.99755 * 180.02562 * 6 4 2
9 9 H 1.48497 * 109.47096 * 90.00205 * 8 6 4
10 10 H 1.48497 * 109.47063 * 210.00312 * 8 6 4
11 11 H 1.48498 * 109.46742 * 329.99990 * 8 6 4
12 12 N 1.46504 * 109.46768 * 119.99804 * 2 1 3
13 13 C 1.46501 * 119.99864 * 60.00059 * 12 2 1
14 14 C 1.34768 * 120.00165 * 239.99840 * 12 2 1
15 15 O 1.21287 * 120.00115 * 359.97438 * 14 12 2
16 16 C 1.50699 * 120.00498 * 179.97438 * 14 12 2
17 17 H 1.09000 * 109.47343 * 305.00314 * 16 14 12
18 18 C 1.53005 * 109.46953 * 65.00184 * 16 14 12
19 19 O 1.42897 * 109.47767 * 185.00019 * 16 14 12
20 20 C 1.35835 * 117.00530 * 155.13554 * 19 16 14
21 21 C 1.38596 * 120.11294 * 5.41567 * 20 19 16
22 22 C 1.38181 * 120.05973 * 179.97438 * 21 20 19
23 23 C 1.38380 * 120.29360 * 0.02562 * 22 21 20
24 24 C 1.38017 * 120.23767 * 359.97438 * 23 22 21
25 25 C 1.39273 * 119.93164 * 359.74089 * 24 23 22
26 26 C 1.48398 * 120.14168 * 180.27662 * 25 24 23
27 27 N 1.34067 * 126.67173 * 179.97438 * 26 25 24
28 28 N 1.28990 * 107.26490 * 179.83809 * 27 26 25
29 29 N 1.28736 * 108.94735 * 0.43202 * 28 27 26
30 30 H 0.97001 * 125.33762 * 179.73815 * 29 28 27
31 31 N 1.28868 * 109.32231 * 359.72764 * 29 28 27
32 32 H 1.08996 * 109.46704 * 300.00705 * 1 2 3
33 33 H 1.09001 * 109.46268 * 60.00113 * 1 2 3
34 34 H 1.08993 * 109.47164 * 180.02562 * 1 2 3
35 35 H 0.96997 * 119.99686 * 180.02562 * 7 6 4
36 36 H 1.09000 * 109.47568 * 89.99762 * 13 12 2
37 37 H 1.09005 * 109.47153 * 210.00205 * 13 12 2
38 38 H 1.09001 * 109.47035 * 329.99684 * 13 12 2
39 39 H 1.09000 * 109.46989 * 59.99913 * 18 16 14
40 40 H 1.08994 * 109.47458 * 180.02562 * 18 16 14
41 41 H 1.09003 * 109.47103 * 300.00554 * 18 16 14
42 42 H 1.08002 * 119.97521 * 0.02562 * 21 20 19
43 43 H 1.08001 * 119.85274 * 180.02562 * 22 21 20
44 44 H 1.08005 * 119.87865 * 179.97438 * 23 22 21
45 45 H 1.07997 * 120.02992 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8935 1.0276 0.0000
4 6 2.0325 -0.7105 -1.2304
5 1 2.6533 -1.5886 -1.1312
6 6 1.6994 -0.2395 -2.4826
7 7 0.9437 0.8301 -2.6034
8 14 2.3215 -1.1206 -4.0079
9 1 1.3429 -2.1619 -4.4118
10 1 2.4869 -0.1417 -5.1122
11 1 3.6294 -1.7586 -3.7120
12 7 2.0183 -0.6906 1.1963
13 6 1.6643 -2.0932 1.4281
14 6 2.7931 -0.0357 2.0834
15 8 3.0866 1.1253 1.8912
16 6 3.2949 -0.7458 3.3142
17 1 2.4506 -1.1649 3.8616
18 6 4.2448 -1.8721 2.9015
19 8 3.9906 0.1819 4.1492
20 6 4.0548 -0.1090 5.4745
21 6 3.5606 -1.3148 5.9464
22 6 3.6269 -1.6098 7.2947
23 6 4.1855 -0.7053 8.1806
24 6 4.6814 0.4990 7.7239
25 6 4.6248 0.8038 6.3661
26 6 5.1622 2.0947 5.8691
27 7 5.1760 2.5200 4.5978
28 7 5.7234 3.6880 4.5907
29 7 6.0566 4.0007 5.7942
30 1 6.4898 4.8270 6.0597
31 7 5.7241 3.0441 6.5910
32 1 -0.3632 0.5139 0.8899
33 1 -0.3632 0.5138 -0.8900
34 1 -0.3633 -1.0276 0.0005
35 1 0.7092 1.1612 -3.4844
36 1 2.4156 -2.7378 0.9718
37 1 1.6236 -2.2852 2.5003
38 1 0.6903 -2.3001 0.9847
39 1 5.0891 -1.4530 2.3542
40 1 4.6074 -2.3861 3.7917
41 1 3.7142 -2.5798 2.2646
42 1 3.1239 -2.0248 5.2597
43 1 3.2411 -2.5506 7.6588
44 1 4.2335 -0.9426 9.2331
45 1 5.1162 1.2027 8.4182
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000736184371.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:05:41
Heat of formation + Delta-G solvation = 72.141723 kcal
Electronic energy + Delta-G solvation = -30519.546279 eV
Core-core repulsion = 26347.598934 eV
Total energy + Delta-G solvation = -4171.947345 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-45.36405 -41.68467 -40.41115 -38.38965 -37.06025 -35.38541 -34.99895 -34.56489
-33.11703 -31.54242 -30.99658 -30.40777 -27.73530 -27.29501 -25.87268 -25.69793
-25.26070 -23.65369 -22.59798 -22.20038 -20.29641 -20.06883 -19.17706 -18.52562
-18.07802 -17.63444 -17.54314 -17.09440 -16.66971 -16.52269 -15.93821 -15.68618
-15.43397 -15.18568 -14.92469 -14.65386 -14.43086 -14.32662 -13.91642 -13.58820
-13.50306 -13.24535 -13.19278 -13.01718 -12.90114 -12.81346 -12.63510 -12.49207
-12.44764 -12.31178 -12.18641 -12.15642 -12.09217 -11.99786 -11.86431 -11.75760
-11.16010 -10.59633 -10.41505 -9.78998 -9.32660 -9.10654 -8.13006 -6.29713
-0.22781 0.25783 0.46230 1.41227 1.41445 1.44048 1.48663 1.53390
1.71692 1.78339 2.41238 2.70937 2.77173 2.85265 3.15030 3.26292
3.51685 3.70133 3.95028 4.00057 4.02761 4.30915 4.36033 4.44369
4.51088 4.54376 4.57308 4.65230 4.70077 4.73292 4.83488 4.89309
4.98165 5.01990 5.07106 5.21761 5.31696 5.43953 5.47687 5.55122
5.61680 5.67482 5.68319 5.84306 6.04951 6.17031 6.40751 6.78213
6.81430 7.24013 7.33034 7.48714 8.91535
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.014285 B = 0.003004 C = 0.002650
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1959.568539 B = 9318.776756 C =10562.052861
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.263 3.737
3 H 0.002 0.998
4 C -0.535 4.535
5 H 0.064 0.936
6 C 0.012 3.988
7 N -0.920 5.920
8 Si 0.966 3.034
9 H -0.264 1.264
10 H -0.289 1.289
11 H -0.270 1.270
12 N -0.594 5.594
13 C 0.073 3.927
14 C 0.493 3.507
15 O -0.582 6.582
16 C 0.075 3.925
17 H 0.127 0.873
18 C -0.172 4.172
19 O -0.291 6.291
20 C 0.144 3.856
21 C -0.219 4.219
22 C -0.045 4.045
23 C -0.156 4.156
24 C -0.043 4.043
25 C -0.087 4.087
26 C 0.208 3.792
27 N -0.279 5.279
28 N -0.078 5.078
29 N -0.205 5.205
30 H 0.492 0.508
31 N -0.294 5.294
32 H 0.018 0.982
33 H 0.067 0.933
34 H 0.054 0.946
35 H 0.264 0.736
36 H 0.066 0.934
37 H 0.098 0.902
38 H 0.075 0.925
39 H 0.045 0.955
40 H 0.103 0.897
41 H 0.104 0.896
42 H 0.158 0.842
43 H 0.170 0.830
44 H 0.166 0.834
45 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.228 -8.188 25.423 27.425
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.162 3.838
3 H 0.020 0.980
4 C -0.574 4.574
5 H 0.082 0.918
6 C -0.187 4.187
7 N -0.559 5.559
8 Si 0.791 3.209
9 H -0.189 1.189
10 H -0.215 1.215
11 H -0.195 1.195
12 N -0.326 5.326
13 C -0.068 4.068
14 C 0.280 3.720
15 O -0.462 6.462
16 C 0.016 3.984
17 H 0.144 0.856
18 C -0.229 4.229
19 O -0.203 6.203
20 C 0.095 3.905
21 C -0.237 4.237
22 C -0.064 4.064
23 C -0.173 4.173
24 C -0.063 4.063
25 C -0.091 4.091
26 C -0.071 4.071
27 N -0.151 5.151
28 N -0.073 5.073
29 N -0.055 5.055
30 H 0.350 0.650
31 N -0.148 5.148
32 H 0.037 0.963
33 H 0.085 0.915
34 H 0.073 0.927
35 H 0.073 0.927
36 H 0.084 0.916
37 H 0.116 0.884
38 H 0.094 0.906
39 H 0.064 0.936
40 H 0.121 0.879
41 H 0.122 0.878
42 H 0.175 0.825
43 H 0.187 0.813
44 H 0.183 0.817
45 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges 6.515 -6.839 24.556 26.310
hybrid contribution 0.381 0.686 -1.092 1.345
sum 6.897 -6.153 23.464 25.219
Atomic orbital electron populations
1.21879 0.96926 1.00411 0.99857 1.18526 0.91688 0.92035 0.81591
0.97976 1.21578 1.31804 1.13041 0.90950 0.91754 1.25770 0.95137
0.95634 1.02139 1.70039 1.37519 1.23956 1.24356 0.85436 0.78919
0.78220 0.78317 1.18928 1.21488 1.19496 1.48107 1.48785 1.13600
1.22123 1.22074 1.02115 0.80188 1.02456 1.20885 0.78982 0.86841
0.85314 1.90710 1.58639 1.19454 1.77363 1.22315 0.97253 0.89422
0.89413 0.85561 1.22440 0.99327 0.96730 1.04399 1.86443 1.70351
1.47989 1.15480 1.19394 0.94472 0.93926 0.82684 1.21569 1.07033
0.96071 0.99042 1.21594 0.93566 1.00103 0.91097 1.21415 1.00864
0.93081 1.01988 1.21225 0.95911 0.98019 0.91108 1.16928 1.09108
0.89091 0.93995 1.23945 0.99810 0.96900 0.86430 1.76574 1.15743
1.02643 1.20098 1.79004 1.12361 1.09964 1.06014 1.47797 1.38043
1.17261 1.02385 0.64985 1.74752 1.18935 0.98781 1.22364 0.96337
0.91461 0.92722 0.92728 0.91571 0.88411 0.90612 0.93560 0.87870
0.87770 0.82496 0.81282 0.81656 0.83323
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.48 8.95 71.98 0.64 -5.84 16
2 C 0.26 14.12 2.64 44.25 0.12 14.23 16
3 H 0.00 0.15 6.90 -2.39 -0.02 0.13 16
4 C -0.54 -29.50 8.37 25.60 0.21 -29.29 16
5 H 0.06 3.39 7.65 -2.91 -0.02 3.37 16
6 C 0.01 0.70 5.30 84.65 0.45 1.14 16
7 N -0.92 -54.37 11.32 21.45 0.24 -54.13 16
8 Si 0.97 43.72 29.54 68.60 2.03 45.74 16
9 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16
10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16
11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
12 N -0.59 -25.45 2.75 -826.77 -2.28 -27.73 16
13 C 0.07 2.14 8.16 127.77 1.04 3.18 16
14 C 0.49 21.97 7.10 87.66 0.62 22.59 16
15 O -0.58 -33.42 15.84 15.94 0.25 -33.17 16
16 C 0.08 2.35 1.83 29.85 0.05 2.40 16
17 H 0.13 2.90 5.31 -2.39 -0.01 2.89 16
18 C -0.17 -4.21 8.89 71.98 0.64 -3.57 16
19 O -0.29 -10.46 7.68 -72.71 -0.56 -11.02 16
20 C 0.14 3.96 6.60 22.72 0.15 4.11 16
21 C -0.22 -3.88 8.24 22.34 0.18 -3.69 16
22 C -0.05 -0.52 10.03 22.29 0.22 -0.30 16
23 C -0.16 -1.86 10.03 22.25 0.22 -1.63 16
24 C -0.04 -0.77 9.70 22.47 0.22 -0.55 16
25 C -0.09 -2.35 5.89 -19.96 -0.12 -2.47 16
26 C 0.21 6.66 7.91 137.35 1.09 7.74 16
27 N -0.28 -10.99 11.06 -52.21 -0.58 -11.57 16
28 N -0.08 -2.61 13.47 37.02 0.50 -2.11 16
29 N -0.20 -4.64 7.90 37.02 0.29 -4.35 16
30 H 0.49 5.46 8.96 -347.53 -3.12 2.34 16
31 N -0.29 -7.52 12.08 -52.16 -0.63 -8.15 16
32 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16
33 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16
34 H 0.05 2.36 6.66 -2.39 -0.02 2.34 16
35 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16
36 H 0.07 1.78 7.02 -2.39 -0.02 1.77 16
37 H 0.10 1.90 6.07 -2.38 -0.01 1.89 16
38 H 0.08 2.23 6.43 -2.39 -0.02 2.21 16
39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16
40 H 0.10 1.80 6.90 -2.39 -0.02 1.78 16
41 H 0.10 2.16 5.12 -2.39 -0.01 2.15 16
42 H 0.16 2.05 5.42 -2.91 -0.02 2.04 16
43 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16
44 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16
45 H 0.15 2.21 7.88 -2.91 -0.02 2.19 16
Total: -1.00 -89.19 369.70 2.97 -86.22
By element:
Atomic # 1 Polarization: 14.26 SS G_CDS: -2.05 Total: 12.21 kcal
Atomic # 6 Polarization: 2.30 SS G_CDS: 5.75 Total: 8.06 kcal
Atomic # 7 Polarization: -105.59 SS G_CDS: -2.45 Total: -108.04 kcal
Atomic # 8 Polarization: -43.89 SS G_CDS: -0.31 Total: -44.19 kcal
Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal
Total: -89.19 2.97 -86.22 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000736184371.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 158.361 kcal
(2) G-P(sol) polarization free energy of solvation -89.194 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.219 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.142 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds