Wall clock time and date at job start Wed Apr 1 2020 04:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47650 * 2 1 4 4 C 1.50703 * 109.47348 * 239.99485 * 2 1 3 5 5 H 1.07996 * 119.99847 * 240.00686 * 4 2 1 6 6 C 1.37874 * 119.99516 * 60.00276 * 4 2 1 7 7 N 1.31516 * 120.00348 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99755 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47096 * 90.00205 * 8 6 4 10 10 H 1.48497 * 109.47063 * 210.00312 * 8 6 4 11 11 H 1.48498 * 109.46742 * 329.99990 * 8 6 4 12 12 N 1.46504 * 109.46768 * 119.99804 * 2 1 3 13 13 C 1.46501 * 119.99864 * 60.00059 * 12 2 1 14 14 C 1.34768 * 120.00165 * 239.99840 * 12 2 1 15 15 O 1.21287 * 120.00115 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00498 * 179.97438 * 14 12 2 17 17 H 1.09000 * 109.47343 * 305.00314 * 16 14 12 18 18 C 1.53005 * 109.46953 * 65.00184 * 16 14 12 19 19 O 1.42897 * 109.47767 * 185.00019 * 16 14 12 20 20 C 1.35835 * 117.00530 * 155.13554 * 19 16 14 21 21 C 1.38596 * 120.11294 * 5.41567 * 20 19 16 22 22 C 1.38181 * 120.05973 * 179.97438 * 21 20 19 23 23 C 1.38380 * 120.29360 * 0.02562 * 22 21 20 24 24 C 1.38017 * 120.23767 * 359.97438 * 23 22 21 25 25 C 1.39273 * 119.93164 * 359.74089 * 24 23 22 26 26 C 1.48398 * 120.14168 * 180.27662 * 25 24 23 27 27 N 1.34067 * 126.67173 * 179.97438 * 26 25 24 28 28 N 1.28990 * 107.26490 * 179.83809 * 27 26 25 29 29 N 1.28736 * 108.94735 * 0.43202 * 28 27 26 30 30 H 0.97001 * 125.33762 * 179.73815 * 29 28 27 31 31 N 1.28868 * 109.32231 * 359.72764 * 29 28 27 32 32 H 1.08996 * 109.46704 * 300.00705 * 1 2 3 33 33 H 1.09001 * 109.46268 * 60.00113 * 1 2 3 34 34 H 1.08993 * 109.47164 * 180.02562 * 1 2 3 35 35 H 0.96997 * 119.99686 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47568 * 89.99762 * 13 12 2 37 37 H 1.09005 * 109.47153 * 210.00205 * 13 12 2 38 38 H 1.09001 * 109.47035 * 329.99684 * 13 12 2 39 39 H 1.09000 * 109.46989 * 59.99913 * 18 16 14 40 40 H 1.08994 * 109.47458 * 180.02562 * 18 16 14 41 41 H 1.09003 * 109.47103 * 300.00554 * 18 16 14 42 42 H 1.08002 * 119.97521 * 0.02562 * 21 20 19 43 43 H 1.08001 * 119.85274 * 180.02562 * 22 21 20 44 44 H 1.08005 * 119.87865 * 179.97438 * 23 22 21 45 45 H 1.07997 * 120.02992 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0325 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1206 -4.0079 9 1 1.3429 -2.1619 -4.4118 10 1 2.4869 -0.1417 -5.1122 11 1 3.6294 -1.7586 -3.7120 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0357 2.0834 15 8 3.0866 1.1253 1.8912 16 6 3.2949 -0.7458 3.3142 17 1 2.4506 -1.1649 3.8616 18 6 4.2448 -1.8721 2.9015 19 8 3.9906 0.1819 4.1492 20 6 4.0548 -0.1090 5.4745 21 6 3.5606 -1.3148 5.9464 22 6 3.6269 -1.6098 7.2947 23 6 4.1855 -0.7053 8.1806 24 6 4.6814 0.4990 7.7239 25 6 4.6248 0.8038 6.3661 26 6 5.1622 2.0947 5.8691 27 7 5.1760 2.5200 4.5978 28 7 5.7234 3.6880 4.5907 29 7 6.0566 4.0007 5.7942 30 1 6.4898 4.8270 6.0597 31 7 5.7241 3.0441 6.5910 32 1 -0.3632 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 0.7092 1.1612 -3.4844 36 1 2.4156 -2.7378 0.9718 37 1 1.6236 -2.2852 2.5003 38 1 0.6903 -2.3001 0.9847 39 1 5.0891 -1.4530 2.3542 40 1 4.6074 -2.3861 3.7917 41 1 3.7142 -2.5798 2.2646 42 1 3.1239 -2.0248 5.2597 43 1 3.2411 -2.5506 7.6588 44 1 4.2335 -0.9426 9.2331 45 1 5.1162 1.2027 8.4182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736184371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:41 Heat of formation + Delta-G solvation = 72.141723 kcal Electronic energy + Delta-G solvation = -30519.546279 eV Core-core repulsion = 26347.598934 eV Total energy + Delta-G solvation = -4171.947345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.36405 -41.68467 -40.41115 -38.38965 -37.06025 -35.38541 -34.99895 -34.56489 -33.11703 -31.54242 -30.99658 -30.40777 -27.73530 -27.29501 -25.87268 -25.69793 -25.26070 -23.65369 -22.59798 -22.20038 -20.29641 -20.06883 -19.17706 -18.52562 -18.07802 -17.63444 -17.54314 -17.09440 -16.66971 -16.52269 -15.93821 -15.68618 -15.43397 -15.18568 -14.92469 -14.65386 -14.43086 -14.32662 -13.91642 -13.58820 -13.50306 -13.24535 -13.19278 -13.01718 -12.90114 -12.81346 -12.63510 -12.49207 -12.44764 -12.31178 -12.18641 -12.15642 -12.09217 -11.99786 -11.86431 -11.75760 -11.16010 -10.59633 -10.41505 -9.78998 -9.32660 -9.10654 -8.13006 -6.29713 -0.22781 0.25783 0.46230 1.41227 1.41445 1.44048 1.48663 1.53390 1.71692 1.78339 2.41238 2.70937 2.77173 2.85265 3.15030 3.26292 3.51685 3.70133 3.95028 4.00057 4.02761 4.30915 4.36033 4.44369 4.51088 4.54376 4.57308 4.65230 4.70077 4.73292 4.83488 4.89309 4.98165 5.01990 5.07106 5.21761 5.31696 5.43953 5.47687 5.55122 5.61680 5.67482 5.68319 5.84306 6.04951 6.17031 6.40751 6.78213 6.81430 7.24013 7.33034 7.48714 8.91535 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.003004 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.568539 B = 9318.776756 C =10562.052861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.263 3.737 3 H 0.002 0.998 4 C -0.535 4.535 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.966 3.034 9 H -0.264 1.264 10 H -0.289 1.289 11 H -0.270 1.270 12 N -0.594 5.594 13 C 0.073 3.927 14 C 0.493 3.507 15 O -0.582 6.582 16 C 0.075 3.925 17 H 0.127 0.873 18 C -0.172 4.172 19 O -0.291 6.291 20 C 0.144 3.856 21 C -0.219 4.219 22 C -0.045 4.045 23 C -0.156 4.156 24 C -0.043 4.043 25 C -0.087 4.087 26 C 0.208 3.792 27 N -0.279 5.279 28 N -0.078 5.078 29 N -0.205 5.205 30 H 0.492 0.508 31 N -0.294 5.294 32 H 0.018 0.982 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.264 0.736 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.045 0.955 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.158 0.842 43 H 0.170 0.830 44 H 0.166 0.834 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 -8.188 25.423 27.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.162 3.838 3 H 0.020 0.980 4 C -0.574 4.574 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.215 1.215 11 H -0.195 1.195 12 N -0.326 5.326 13 C -0.068 4.068 14 C 0.280 3.720 15 O -0.462 6.462 16 C 0.016 3.984 17 H 0.144 0.856 18 C -0.229 4.229 19 O -0.203 6.203 20 C 0.095 3.905 21 C -0.237 4.237 22 C -0.064 4.064 23 C -0.173 4.173 24 C -0.063 4.063 25 C -0.091 4.091 26 C -0.071 4.071 27 N -0.151 5.151 28 N -0.073 5.073 29 N -0.055 5.055 30 H 0.350 0.650 31 N -0.148 5.148 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.175 0.825 43 H 0.187 0.813 44 H 0.183 0.817 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.515 -6.839 24.556 26.310 hybrid contribution 0.381 0.686 -1.092 1.345 sum 6.897 -6.153 23.464 25.219 Atomic orbital electron populations 1.21879 0.96926 1.00411 0.99857 1.18526 0.91688 0.92035 0.81591 0.97976 1.21578 1.31804 1.13041 0.90950 0.91754 1.25770 0.95137 0.95634 1.02139 1.70039 1.37519 1.23956 1.24356 0.85436 0.78919 0.78220 0.78317 1.18928 1.21488 1.19496 1.48107 1.48785 1.13600 1.22123 1.22074 1.02115 0.80188 1.02456 1.20885 0.78982 0.86841 0.85314 1.90710 1.58639 1.19454 1.77363 1.22315 0.97253 0.89422 0.89413 0.85561 1.22440 0.99327 0.96730 1.04399 1.86443 1.70351 1.47989 1.15480 1.19394 0.94472 0.93926 0.82684 1.21569 1.07033 0.96071 0.99042 1.21594 0.93566 1.00103 0.91097 1.21415 1.00864 0.93081 1.01988 1.21225 0.95911 0.98019 0.91108 1.16928 1.09108 0.89091 0.93995 1.23945 0.99810 0.96900 0.86430 1.76574 1.15743 1.02643 1.20098 1.79004 1.12361 1.09964 1.06014 1.47797 1.38043 1.17261 1.02385 0.64985 1.74752 1.18935 0.98781 1.22364 0.96337 0.91461 0.92722 0.92728 0.91571 0.88411 0.90612 0.93560 0.87870 0.87770 0.82496 0.81282 0.81656 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.48 8.95 71.98 0.64 -5.84 16 2 C 0.26 14.12 2.64 44.25 0.12 14.23 16 3 H 0.00 0.15 6.90 -2.39 -0.02 0.13 16 4 C -0.54 -29.50 8.37 25.60 0.21 -29.29 16 5 H 0.06 3.39 7.65 -2.91 -0.02 3.37 16 6 C 0.01 0.70 5.30 84.65 0.45 1.14 16 7 N -0.92 -54.37 11.32 21.45 0.24 -54.13 16 8 Si 0.97 43.72 29.54 68.60 2.03 45.74 16 9 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 N -0.59 -25.45 2.75 -826.77 -2.28 -27.73 16 13 C 0.07 2.14 8.16 127.77 1.04 3.18 16 14 C 0.49 21.97 7.10 87.66 0.62 22.59 16 15 O -0.58 -33.42 15.84 15.94 0.25 -33.17 16 16 C 0.08 2.35 1.83 29.85 0.05 2.40 16 17 H 0.13 2.90 5.31 -2.39 -0.01 2.89 16 18 C -0.17 -4.21 8.89 71.98 0.64 -3.57 16 19 O -0.29 -10.46 7.68 -72.71 -0.56 -11.02 16 20 C 0.14 3.96 6.60 22.72 0.15 4.11 16 21 C -0.22 -3.88 8.24 22.34 0.18 -3.69 16 22 C -0.05 -0.52 10.03 22.29 0.22 -0.30 16 23 C -0.16 -1.86 10.03 22.25 0.22 -1.63 16 24 C -0.04 -0.77 9.70 22.47 0.22 -0.55 16 25 C -0.09 -2.35 5.89 -19.96 -0.12 -2.47 16 26 C 0.21 6.66 7.91 137.35 1.09 7.74 16 27 N -0.28 -10.99 11.06 -52.21 -0.58 -11.57 16 28 N -0.08 -2.61 13.47 37.02 0.50 -2.11 16 29 N -0.20 -4.64 7.90 37.02 0.29 -4.35 16 30 H 0.49 5.46 8.96 -347.53 -3.12 2.34 16 31 N -0.29 -7.52 12.08 -52.16 -0.63 -8.15 16 32 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 34 H 0.05 2.36 6.66 -2.39 -0.02 2.34 16 35 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 36 H 0.07 1.78 7.02 -2.39 -0.02 1.77 16 37 H 0.10 1.90 6.07 -2.38 -0.01 1.89 16 38 H 0.08 2.23 6.43 -2.39 -0.02 2.21 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 1.80 6.90 -2.39 -0.02 1.78 16 41 H 0.10 2.16 5.12 -2.39 -0.01 2.15 16 42 H 0.16 2.05 5.42 -2.91 -0.02 2.04 16 43 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 44 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 45 H 0.15 2.21 7.88 -2.91 -0.02 2.19 16 Total: -1.00 -89.19 369.70 2.97 -86.22 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -2.05 Total: 12.21 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 5.75 Total: 8.06 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -2.45 Total: -108.04 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.31 Total: -44.19 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -89.19 2.97 -86.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736184371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.361 kcal (2) G-P(sol) polarization free energy of solvation -89.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds