Wall clock time and date at job start Wed Apr 1 2020 04:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46629 * 2 1 4 4 C 1.50699 * 109.47164 * 120.00312 * 2 1 3 5 5 H 1.07995 * 120.00053 * 120.00096 * 4 2 1 6 6 C 1.37878 * 119.99679 * 299.99460 * 4 2 1 7 7 N 1.31511 * 120.00346 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99781 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46729 * 60.00575 * 8 6 4 10 10 H 1.48494 * 109.47164 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47137 * 300.00532 * 8 6 4 12 12 N 1.46500 * 109.46828 * 240.00322 * 2 1 3 13 13 C 1.46502 * 119.99843 * 299.99454 * 12 2 1 14 14 C 1.34770 * 120.00009 * 120.00013 * 12 2 1 15 15 O 1.21284 * 120.00259 * 359.97438 * 14 12 2 16 16 C 1.50706 * 119.99982 * 179.97438 * 14 12 2 17 17 H 1.08997 * 109.46854 * 59.99763 * 16 14 12 18 18 C 1.53002 * 109.46695 * 299.99742 * 16 14 12 19 19 O 1.42898 * 109.46828 * 179.97438 * 16 14 12 20 20 C 1.35846 * 116.99878 * 204.87086 * 19 16 14 21 21 C 1.38595 * 120.11636 * 354.58561 * 20 19 16 22 22 C 1.38169 * 120.05813 * 180.25409 * 21 20 19 23 23 C 1.38382 * 120.29986 * 359.44484 * 22 21 20 24 24 C 1.38016 * 120.23218 * 0.55373 * 23 22 21 25 25 C 1.39268 * 119.93258 * 359.72997 * 24 23 22 26 26 C 1.48399 * 120.14590 * 179.97438 * 25 24 23 27 27 N 1.34064 * 126.67979 * 179.70522 * 26 25 24 28 28 N 1.28987 * 107.26765 * 179.83631 * 27 26 25 29 29 N 1.28740 * 108.94753 * 0.43311 * 28 27 26 30 30 H 0.96993 * 125.33389 * 179.75890 * 29 28 27 31 31 N 1.28865 * 109.32215 * 359.72471 * 29 28 27 32 32 H 1.09000 * 109.46912 * 299.99512 * 1 2 3 33 33 H 1.08997 * 109.47275 * 59.99720 * 1 2 3 34 34 H 1.09004 * 109.47260 * 180.02562 * 1 2 3 35 35 H 0.97007 * 120.00183 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.47215 * 270.00103 * 13 12 2 37 37 H 1.09005 * 109.46950 * 30.00659 * 13 12 2 38 38 H 1.09002 * 109.46965 * 150.00027 * 13 12 2 39 39 H 1.09000 * 109.46526 * 180.02562 * 18 16 14 40 40 H 1.08992 * 109.47063 * 299.99837 * 18 16 14 41 41 H 1.08997 * 109.47394 * 60.00594 * 18 16 14 42 42 H 1.08002 * 119.96881 * 359.97438 * 21 20 19 43 43 H 1.08001 * 119.85063 * 179.71863 * 22 21 20 44 44 H 1.07995 * 119.88496 * 180.29953 * 23 22 21 45 45 H 1.07993 * 120.03483 * 179.70036 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8076 -1.1190 4.0076 10 1 1.8272 -0.4200 5.2204 11 1 1.8282 -2.5199 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2959 -0.7461 -3.3136 17 1 2.4483 -1.0890 -3.9069 18 6 4.1461 -1.9478 -2.8967 19 8 4.0891 0.1523 -4.0918 20 6 4.1888 -0.1065 -5.4216 21 6 3.6321 -1.2611 -5.9489 22 6 3.7388 -1.5258 -7.3008 23 6 4.3905 -0.6365 -8.1371 24 6 4.9493 0.5170 -7.6250 25 6 4.8526 0.7905 -6.2629 26 6 5.4522 2.0290 -5.7071 27 7 5.4324 2.4232 -4.4259 28 7 6.0639 3.5461 -4.3610 29 7 6.4647 3.8691 -5.5410 30 1 6.9614 4.6716 -5.7646 31 7 6.1030 2.9587 -6.3782 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 0.7090 1.1613 3.4845 36 1 2.4157 -2.7376 -0.9718 37 1 0.6904 -2.3002 -0.9847 38 1 1.6237 -2.2852 -2.5002 39 1 4.5101 -2.4615 -3.7865 40 1 4.9937 -1.6049 -2.3034 41 1 3.5407 -2.6330 -2.3034 42 1 3.1185 -1.9566 -5.3018 43 1 3.3077 -2.4287 -7.7075 44 1 4.4657 -0.8477 -9.1935 45 1 5.4613 1.2064 -8.2798 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736184375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:53 Heat of formation + Delta-G solvation = 100.077339 kcal Electronic energy + Delta-G solvation = -30527.545367 eV Core-core repulsion = 26356.809401 eV Total energy + Delta-G solvation = -4170.735966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.27592 -40.57138 -39.04493 -37.31193 -35.25898 -34.30552 -33.57695 -33.18109 -31.66834 -30.67814 -29.87026 -28.87093 -26.37597 -25.22294 -24.83989 -24.53568 -24.09764 -22.46395 -21.67718 -20.71782 -19.26561 -18.52268 -18.15487 -16.99019 -16.69114 -16.49267 -16.04157 -15.76510 -15.43748 -15.04935 -14.60077 -14.48722 -14.24671 -14.13088 -13.69658 -13.34404 -13.25558 -12.81563 -12.61344 -12.28962 -12.19938 -12.11988 -11.79524 -11.68735 -11.52996 -11.40233 -11.18966 -11.09553 -11.01918 -10.92336 -10.87913 -10.82178 -10.70909 -10.67700 -10.23286 -10.13095 -9.16279 -9.02630 -8.81769 -8.39544 -8.20109 -7.58119 -6.04234 -4.12291 0.64368 1.22860 1.34432 2.32664 2.43908 2.91487 3.29944 3.34819 3.35569 3.39064 3.64452 3.75306 4.06762 4.26174 4.42202 4.65186 4.75711 4.82256 4.99939 5.03319 5.10588 5.19148 5.27004 5.35674 5.37804 5.58109 5.62492 5.68272 5.70048 5.74550 5.98598 6.07869 6.12894 6.17189 6.26264 6.32430 6.46886 6.53105 6.77742 6.82969 7.06506 7.30397 7.47781 7.55450 7.73446 8.04198 8.21518 8.35028 8.51466 8.86144 9.06776 9.54006 11.01080 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.003021 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.539630 B = 9266.618232 C =10524.714689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.261 3.739 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.590 5.590 13 C 0.082 3.918 14 C 0.507 3.493 15 O -0.514 6.514 16 C 0.063 3.937 17 H 0.092 0.908 18 C -0.186 4.186 19 O -0.253 6.253 20 C 0.178 3.822 21 C -0.219 4.219 22 C -0.057 4.057 23 C -0.169 4.169 24 C -0.041 4.041 25 C -0.056 4.056 26 C 0.219 3.781 27 N -0.222 5.222 28 N -0.052 5.052 29 N -0.238 5.238 30 H 0.471 0.529 31 N -0.307 5.307 32 H 0.094 0.906 33 H 0.011 0.989 34 H 0.030 0.970 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.139 0.861 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.680 -4.393 -22.208 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.083 0.917 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.324 5.324 13 C -0.062 4.062 14 C 0.291 3.709 15 O -0.389 6.389 16 C 0.003 3.997 17 H 0.109 0.891 18 C -0.244 4.244 19 O -0.163 6.163 20 C 0.128 3.872 21 C -0.238 4.238 22 C -0.076 4.076 23 C -0.187 4.187 24 C -0.062 4.062 25 C -0.060 4.060 26 C -0.060 4.060 27 N -0.095 5.095 28 N -0.048 5.048 29 N -0.082 5.082 30 H 0.324 0.676 31 N -0.160 5.160 32 H 0.113 0.887 33 H 0.031 0.969 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.156 0.844 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.971 -3.032 -21.287 22.603 hybrid contribution 0.387 -0.552 0.360 0.764 sum 7.358 -3.584 -20.927 22.471 Atomic orbital electron populations 1.22107 0.98204 0.99349 1.00930 1.18951 0.90777 0.94596 0.79547 0.91748 1.21268 1.31875 1.13016 0.90241 0.92288 1.24887 0.94954 0.94972 0.98936 1.69868 1.36300 1.22566 1.23854 0.86556 0.79294 0.79505 0.82030 1.20219 1.21209 1.20268 1.48129 1.49207 1.11544 1.23530 1.21748 1.01832 0.83592 0.99037 1.19759 0.80012 0.87317 0.83805 1.90748 1.56346 1.16272 1.75539 1.22412 0.94243 0.90306 0.92747 0.89077 1.22572 1.01834 0.96901 1.03043 1.86484 1.64983 1.50268 1.14530 1.19042 0.92281 0.91990 0.83924 1.21299 1.06918 0.98403 0.97156 1.21096 0.95444 0.98518 0.92528 1.20934 1.02299 0.95255 1.00232 1.20978 0.96269 0.96750 0.92168 1.16524 1.05982 0.91014 0.92500 1.23438 0.98869 0.95991 0.87695 1.76590 1.13259 1.02824 1.16793 1.79103 1.09657 1.09995 1.06048 1.47745 1.37911 1.19192 1.03386 0.67560 1.74790 1.18481 1.00856 1.21846 0.88730 0.96945 0.95074 0.92629 0.92747 0.90616 0.93115 0.91438 0.90621 0.88967 0.84373 0.85293 0.85273 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.95 37.16 0.33 -3.18 16 2 C 0.26 6.69 2.64 -69.08 -0.18 6.51 16 3 H 0.06 1.94 6.90 -51.93 -0.36 1.58 16 4 C -0.53 -14.18 8.37 -34.44 -0.29 -14.47 16 5 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.59 -12.47 2.75 -175.26 -0.48 -12.95 16 13 C 0.08 1.29 8.04 59.85 0.48 1.77 16 14 C 0.51 10.88 7.15 -10.99 -0.08 10.80 16 15 O -0.51 -13.61 15.83 -14.36 -0.23 -13.83 16 16 C 0.06 1.00 1.84 -27.88 -0.05 0.95 16 17 H 0.09 1.18 5.58 -51.93 -0.29 0.90 16 18 C -0.19 -2.44 8.81 37.16 0.33 -2.12 16 19 O -0.25 -4.43 7.68 -39.17 -0.30 -4.74 16 20 C 0.18 2.53 6.60 -38.88 -0.26 2.27 16 21 C -0.22 -2.35 8.24 -39.47 -0.33 -2.67 16 22 C -0.06 -0.48 10.03 -39.55 -0.40 -0.88 16 23 C -0.17 -1.41 10.03 -39.61 -0.40 -1.80 16 24 C -0.04 -0.43 9.70 -39.28 -0.38 -0.81 16 25 C -0.06 -0.77 5.89 -104.76 -0.62 -1.39 16 26 C 0.22 3.40 7.91 -156.29 -1.24 2.16 16 27 N -0.22 -4.09 11.06 32.15 0.36 -3.73 16 28 N -0.05 -0.82 13.47 60.35 0.81 -0.01 16 29 N -0.24 -2.64 7.90 60.35 0.48 -2.16 16 30 H 0.47 2.67 8.96 -340.37 -3.05 -0.38 16 31 N -0.31 -3.91 12.08 32.16 0.39 -3.52 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.05 0.81 6.95 -51.93 -0.36 0.45 16 37 H 0.08 1.21 6.43 -51.93 -0.33 0.88 16 38 H 0.05 0.60 6.01 -51.93 -0.31 0.29 16 39 H 0.07 0.70 6.91 -51.93 -0.36 0.35 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 1.09 4.53 -51.93 -0.24 0.86 16 42 H 0.14 1.25 5.42 -52.49 -0.28 0.97 16 43 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 44 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.14 1.18 7.88 -52.49 -0.41 0.77 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -36.36 369.10 -8.86 -45.22 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.89 Total: -0.10 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -3.16 Total: -1.17 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 2.18 Total: -47.06 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.53 Total: -18.57 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.36 -8.86 -45.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736184375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.294 kcal (2) G-P(sol) polarization free energy of solvation -36.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds