Wall clock time and date at job start Wed Apr 1 2020 04:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46629 * 2 1 4 4 C 1.50699 * 109.47164 * 120.00312 * 2 1 3 5 5 H 1.07995 * 120.00053 * 120.00096 * 4 2 1 6 6 C 1.37878 * 119.99679 * 299.99460 * 4 2 1 7 7 N 1.31511 * 120.00346 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99781 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46729 * 60.00575 * 8 6 4 10 10 H 1.48494 * 109.47164 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47137 * 300.00532 * 8 6 4 12 12 N 1.46500 * 109.46828 * 240.00322 * 2 1 3 13 13 C 1.46502 * 119.99843 * 299.99454 * 12 2 1 14 14 C 1.34770 * 120.00009 * 120.00013 * 12 2 1 15 15 O 1.21284 * 120.00259 * 359.97438 * 14 12 2 16 16 C 1.50706 * 119.99982 * 179.97438 * 14 12 2 17 17 H 1.08997 * 109.46854 * 59.99763 * 16 14 12 18 18 C 1.53002 * 109.46695 * 299.99742 * 16 14 12 19 19 O 1.42898 * 109.46828 * 179.97438 * 16 14 12 20 20 C 1.35846 * 116.99878 * 204.87086 * 19 16 14 21 21 C 1.38595 * 120.11636 * 354.58561 * 20 19 16 22 22 C 1.38169 * 120.05813 * 180.25409 * 21 20 19 23 23 C 1.38382 * 120.29986 * 359.44484 * 22 21 20 24 24 C 1.38016 * 120.23218 * 0.55373 * 23 22 21 25 25 C 1.39268 * 119.93258 * 359.72997 * 24 23 22 26 26 C 1.48399 * 120.14590 * 179.97438 * 25 24 23 27 27 N 1.34064 * 126.67979 * 179.70522 * 26 25 24 28 28 N 1.28987 * 107.26765 * 179.83631 * 27 26 25 29 29 N 1.28740 * 108.94753 * 0.43311 * 28 27 26 30 30 H 0.96993 * 125.33389 * 179.75890 * 29 28 27 31 31 N 1.28865 * 109.32215 * 359.72471 * 29 28 27 32 32 H 1.09000 * 109.46912 * 299.99512 * 1 2 3 33 33 H 1.08997 * 109.47275 * 59.99720 * 1 2 3 34 34 H 1.09004 * 109.47260 * 180.02562 * 1 2 3 35 35 H 0.97007 * 120.00183 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.47215 * 270.00103 * 13 12 2 37 37 H 1.09005 * 109.46950 * 30.00659 * 13 12 2 38 38 H 1.09002 * 109.46965 * 150.00027 * 13 12 2 39 39 H 1.09000 * 109.46526 * 180.02562 * 18 16 14 40 40 H 1.08992 * 109.47063 * 299.99837 * 18 16 14 41 41 H 1.08997 * 109.47394 * 60.00594 * 18 16 14 42 42 H 1.08002 * 119.96881 * 359.97438 * 21 20 19 43 43 H 1.08001 * 119.85063 * 179.71863 * 22 21 20 44 44 H 1.07995 * 119.88496 * 180.29953 * 23 22 21 45 45 H 1.07993 * 120.03483 * 179.70036 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8076 -1.1190 4.0076 10 1 1.8272 -0.4200 5.2204 11 1 1.8282 -2.5199 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2959 -0.7461 -3.3136 17 1 2.4483 -1.0890 -3.9069 18 6 4.1461 -1.9478 -2.8967 19 8 4.0891 0.1523 -4.0918 20 6 4.1888 -0.1065 -5.4216 21 6 3.6321 -1.2611 -5.9489 22 6 3.7388 -1.5258 -7.3008 23 6 4.3905 -0.6365 -8.1371 24 6 4.9493 0.5170 -7.6250 25 6 4.8526 0.7905 -6.2629 26 6 5.4522 2.0290 -5.7071 27 7 5.4324 2.4232 -4.4259 28 7 6.0639 3.5461 -4.3610 29 7 6.4647 3.8691 -5.5410 30 1 6.9614 4.6716 -5.7646 31 7 6.1030 2.9587 -6.3782 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 0.7090 1.1613 3.4845 36 1 2.4157 -2.7376 -0.9718 37 1 0.6904 -2.3002 -0.9847 38 1 1.6237 -2.2852 -2.5002 39 1 4.5101 -2.4615 -3.7865 40 1 4.9937 -1.6049 -2.3034 41 1 3.5407 -2.6330 -2.3034 42 1 3.1185 -1.9566 -5.3018 43 1 3.3077 -2.4287 -7.7075 44 1 4.4657 -0.8477 -9.1935 45 1 5.4613 1.2064 -8.2798 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736184375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:52 Heat of formation + Delta-G solvation = 74.495525 kcal Electronic energy + Delta-G solvation = -30528.654677 eV Core-core repulsion = 26356.809401 eV Total energy + Delta-G solvation = -4171.845277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.36522 -41.69073 -40.41787 -38.38671 -37.07130 -35.39052 -35.03047 -34.56565 -33.12718 -31.54576 -30.98540 -30.37254 -27.79564 -27.29409 -25.85506 -25.67246 -25.25256 -23.65763 -22.59898 -22.20347 -20.29956 -20.09348 -19.17382 -18.52156 -18.07948 -17.62141 -17.54534 -17.10581 -16.65723 -16.51588 -15.96118 -15.68602 -15.43203 -15.18681 -14.92260 -14.65817 -14.43050 -14.35809 -13.92157 -13.58743 -13.52294 -13.26526 -13.18582 -13.00099 -12.89998 -12.80569 -12.63875 -12.47045 -12.41409 -12.31094 -12.18132 -12.13946 -12.07216 -11.98298 -11.86321 -11.74494 -11.16907 -10.59572 -10.41516 -9.79129 -9.32559 -9.10630 -8.12876 -6.29670 -0.22887 0.25648 0.46150 1.41180 1.41643 1.45119 1.48469 1.51800 1.68028 1.82712 2.41152 2.71136 2.77030 2.85264 3.15083 3.26166 3.51392 3.71614 3.95411 4.00058 4.02727 4.30767 4.35798 4.43794 4.51164 4.54268 4.57506 4.65985 4.69957 4.73605 4.83223 4.89621 4.98138 5.02258 5.07277 5.22792 5.31691 5.43885 5.47700 5.55003 5.61947 5.67376 5.68241 5.84318 6.05185 6.17155 6.40875 6.78035 6.81455 7.23871 7.32963 7.48681 8.91439 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.003021 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.539630 B = 9266.618232 C =10524.714689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.264 3.736 3 H 0.002 0.998 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.965 3.035 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.258 1.258 12 N -0.594 5.594 13 C 0.073 3.927 14 C 0.493 3.507 15 O -0.582 6.582 16 C 0.075 3.925 17 H 0.127 0.873 18 C -0.177 4.177 19 O -0.291 6.291 20 C 0.144 3.856 21 C -0.219 4.219 22 C -0.045 4.045 23 C -0.156 4.156 24 C -0.043 4.043 25 C -0.087 4.087 26 C 0.208 3.792 27 N -0.279 5.279 28 N -0.078 5.078 29 N -0.205 5.205 30 H 0.492 0.508 31 N -0.294 5.294 32 H 0.067 0.933 33 H 0.018 0.982 34 H 0.054 0.946 35 H 0.264 0.736 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.045 0.955 41 H 0.109 0.891 42 H 0.158 0.842 43 H 0.170 0.830 44 H 0.166 0.834 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.636 -8.151 -25.259 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.162 3.838 3 H 0.020 0.980 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.182 1.182 12 N -0.326 5.326 13 C -0.069 4.069 14 C 0.280 3.720 15 O -0.462 6.462 16 C 0.016 3.984 17 H 0.144 0.856 18 C -0.234 4.234 19 O -0.203 6.203 20 C 0.095 3.905 21 C -0.237 4.237 22 C -0.064 4.064 23 C -0.173 4.173 24 C -0.063 4.063 25 C -0.091 4.091 26 C -0.071 4.071 27 N -0.151 5.151 28 N -0.074 5.074 29 N -0.055 5.055 30 H 0.350 0.650 31 N -0.148 5.148 32 H 0.085 0.915 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.064 0.936 41 H 0.127 0.873 42 H 0.175 0.825 43 H 0.187 0.813 44 H 0.183 0.817 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.926 -6.833 -24.364 26.235 hybrid contribution 0.451 0.687 1.107 1.379 sum 7.377 -6.145 -23.257 25.161 Atomic orbital electron populations 1.21880 0.96887 1.00427 0.99875 1.18519 0.91710 0.92009 0.81566 0.98007 1.21556 1.31862 1.13118 0.90981 0.91765 1.25765 0.95100 0.95648 1.02118 1.70030 1.37416 1.23978 1.24428 0.85505 0.78278 0.79170 0.78035 1.20509 1.21099 1.18200 1.48095 1.48851 1.13579 1.22077 1.22121 1.02053 0.80223 1.02491 1.20898 0.78981 0.86840 0.85306 1.90709 1.58654 1.19469 1.77368 1.22303 0.95915 0.89775 0.90416 0.85558 1.22560 1.00586 0.95889 1.04364 1.86443 1.65724 1.51522 1.16573 1.19397 0.94455 0.93949 0.82666 1.21567 1.06316 0.97210 0.98613 1.21591 0.93928 0.99487 0.91362 1.21413 1.00145 0.93757 1.02032 1.21223 0.96395 0.97936 0.90717 1.16932 1.07386 0.90795 0.94023 1.23947 0.99035 0.97090 0.87007 1.76569 1.15299 1.04181 1.19015 1.79004 1.10694 1.10081 1.07574 1.47794 1.36151 1.19276 1.02262 0.64989 1.74754 1.18113 1.00584 1.21377 0.91474 0.96280 0.92714 0.92711 0.91505 0.90625 0.88275 0.87962 0.93565 0.87274 0.82486 0.81280 0.81652 0.83326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.95 71.98 0.64 -5.83 16 2 C 0.26 14.14 2.64 44.25 0.12 14.25 16 3 H 0.00 0.13 6.90 -2.39 -0.02 0.11 16 4 C -0.54 -29.63 8.37 25.60 0.21 -29.42 16 5 H 0.06 3.39 7.65 -2.91 -0.02 3.36 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -54.42 11.32 21.45 0.24 -54.18 16 8 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 9 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 12 N -0.59 -25.43 2.75 -826.78 -2.28 -27.71 16 13 C 0.07 2.11 8.04 127.77 1.03 3.14 16 14 C 0.49 21.98 7.15 87.66 0.63 22.60 16 15 O -0.58 -33.46 15.83 16.00 0.25 -33.20 16 16 C 0.08 2.35 1.84 29.85 0.05 2.40 16 17 H 0.13 2.92 5.58 -2.39 -0.01 2.90 16 18 C -0.18 -4.30 8.81 71.98 0.63 -3.66 16 19 O -0.29 -10.49 7.68 -72.78 -0.56 -11.05 16 20 C 0.14 3.98 6.60 22.72 0.15 4.13 16 21 C -0.22 -3.90 8.24 22.34 0.18 -3.71 16 22 C -0.05 -0.53 10.03 22.29 0.22 -0.30 16 23 C -0.16 -1.87 10.03 22.25 0.22 -1.65 16 24 C -0.04 -0.78 9.70 22.46 0.22 -0.56 16 25 C -0.09 -2.37 5.89 -19.96 -0.12 -2.49 16 26 C 0.21 6.69 7.91 137.35 1.09 7.77 16 27 N -0.28 -11.03 11.06 -52.20 -0.58 -11.61 16 28 N -0.08 -2.62 13.47 37.02 0.50 -2.12 16 29 N -0.20 -4.66 7.90 37.02 0.29 -4.37 16 30 H 0.49 5.51 8.96 -347.54 -3.12 2.40 16 31 N -0.29 -7.55 12.08 -52.15 -0.63 -8.18 16 32 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 2.36 6.66 -2.38 -0.02 2.34 16 35 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 36 H 0.07 1.80 6.95 -2.39 -0.02 1.79 16 37 H 0.08 2.22 6.43 -2.38 -0.02 2.20 16 38 H 0.10 1.92 6.01 -2.39 -0.01 1.90 16 39 H 0.10 1.77 6.91 -2.39 -0.02 1.75 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.11 2.22 4.53 -2.39 -0.01 2.21 16 42 H 0.16 2.06 5.42 -2.91 -0.02 2.05 16 43 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 44 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 45 H 0.15 2.23 7.88 -2.91 -0.02 2.20 16 Total: -1.00 -89.35 369.10 2.96 -86.39 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -2.05 Total: 12.39 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 5.73 Total: 7.87 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -2.45 Total: -108.18 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.31 Total: -44.25 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -89.35 2.96 -86.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736184375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.884 kcal (2) G-P(sol) polarization free energy of solvation -89.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds