Wall clock time and date at job start Wed Apr 1 2020 04:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47336 * 2 1 4 4 C 1.50705 * 109.47363 * 120.00405 * 2 1 3 5 5 H 1.07999 * 119.99917 * 119.99876 * 4 2 1 6 6 C 1.37869 * 119.99765 * 300.00203 * 4 2 1 7 7 N 1.31515 * 120.00465 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99987 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47330 * 89.99679 * 8 6 4 10 10 H 1.48502 * 109.47252 * 210.00045 * 8 6 4 11 11 H 1.48498 * 109.46721 * 329.99727 * 8 6 4 12 12 N 1.46504 * 109.47323 * 240.00192 * 2 1 3 13 13 C 1.34785 * 119.99582 * 84.99897 * 12 2 1 14 14 O 1.21282 * 120.00164 * 359.97438 * 13 12 2 15 15 C 1.50696 * 119.99677 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.47280 * 299.99906 * 15 13 12 17 17 C 1.53002 * 109.47340 * 59.99930 * 15 13 12 18 18 O 1.42901 * 109.47097 * 179.97438 * 15 13 12 19 19 C 1.35873 * 117.00016 * 61.74855 * 18 15 13 20 20 C 1.38833 * 119.93731 * 354.03190 * 19 18 15 21 21 C 1.37911 * 120.05842 * 179.76908 * 20 19 18 22 22 C 1.39338 * 119.94163 * 0.50342 * 21 20 19 23 23 C 1.48433 * 120.06354 * 179.77020 * 22 21 20 24 24 N 1.34063 * 126.67429 * 180.02562 * 23 22 21 25 25 N 1.28980 * 107.26123 * 179.97438 * 24 23 22 26 26 N 1.28733 * 108.95348 * 359.97438 * 25 24 23 27 27 H 0.96999 * 125.33967 * 179.97438 * 26 25 24 28 28 N 1.28876 * 109.31671 * 359.77181 * 26 25 24 29 29 C 1.39348 * 119.87470 * 359.75108 * 22 21 20 30 30 C 1.37912 * 119.93934 * 359.97438 * 29 22 21 31 31 H 1.08999 * 109.46863 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47014 * 299.99586 * 1 2 3 33 33 H 1.08998 * 109.47496 * 59.99650 * 1 2 3 34 34 H 0.96998 * 120.00595 * 180.02562 * 7 6 4 35 35 H 0.96998 * 120.00614 * 265.00465 * 12 2 1 36 36 H 1.09005 * 109.46836 * 52.60709 * 16 15 13 37 37 H 1.08999 * 109.47164 * 172.61037 * 16 15 13 38 38 H 1.09002 * 109.46969 * 292.60774 * 16 15 13 39 39 H 1.08997 * 109.47363 * 64.79859 * 17 15 13 40 40 H 1.09001 * 109.47200 * 184.79799 * 17 15 13 41 41 H 1.08997 * 109.46998 * 304.79649 * 17 15 13 42 42 H 1.08002 * 119.96398 * 0.02562 * 20 19 18 43 43 H 1.08000 * 120.02701 * 180.26104 * 21 20 19 44 44 H 1.07997 * 120.02833 * 180.02562 * 29 22 21 45 45 H 1.08000 * 119.97085 * 179.97438 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9435 0.8300 2.6035 8 14 2.3226 -1.1198 4.0078 9 1 3.6305 -0.5443 4.4118 10 1 1.3445 -0.9494 5.1122 11 1 2.4881 -2.5655 3.7120 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8581 1.1586 -2.4117 15 6 2.6489 -0.7285 -3.5878 16 6 4.0513 -1.2795 -3.3224 17 6 1.7044 -1.8821 -3.9315 18 8 2.6965 0.1896 -4.6817 19 6 3.5231 1.2603 -4.5530 20 6 4.1775 1.4896 -3.3502 21 6 5.0208 2.5729 -3.2183 22 6 5.2075 3.4435 -4.2900 23 6 6.1106 4.6131 -4.1494 24 7 6.3852 5.5301 -5.0879 25 7 7.2096 6.3749 -4.5680 26 7 7.4570 6.0247 -3.3542 27 1 8.0476 6.4938 -2.7442 28 7 6.7936 4.9556 -3.0752 29 6 4.5452 3.2138 -5.4944 30 6 3.7075 2.1258 -5.6226 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 0.7095 1.1615 3.4845 35 1 2.2490 -1.6317 -1.1528 36 1 4.0407 -1.8760 -2.4101 37 1 4.3613 -1.9032 -4.1608 38 1 4.7511 -0.4517 -3.2071 39 1 0.7273 -1.4830 -4.2036 40 1 2.1118 -2.4479 -4.7694 41 1 1.6012 -2.5373 -3.0666 42 1 4.0293 0.8167 -2.5186 43 1 5.5329 2.7484 -2.2838 44 1 4.6885 3.8867 -6.3268 45 1 3.1937 1.9475 -6.5557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820220924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:17 Heat of formation + Delta-G solvation = 87.843865 kcal Electronic energy + Delta-G solvation = -30374.302153 eV Core-core repulsion = 26203.035704 eV Total energy + Delta-G solvation = -4171.266449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 6.00 seconds Orbital eigenvalues (eV) -44.47100 -41.13297 -38.71370 -37.34495 -34.88008 -34.39957 -33.87784 -33.17639 -32.13483 -30.98638 -29.72367 -28.74554 -27.46820 -25.32801 -24.76254 -24.41692 -23.63457 -22.36976 -21.66073 -20.68184 -19.47681 -19.25433 -18.38487 -17.16693 -16.80188 -16.50078 -16.04817 -15.90265 -15.28079 -14.87631 -14.62710 -14.15455 -14.07604 -13.85108 -13.73307 -13.36955 -12.98806 -12.87222 -12.52822 -12.50631 -12.33592 -12.28705 -12.22187 -12.05516 -11.87570 -11.64563 -11.39299 -11.21649 -11.19298 -11.10483 -10.96025 -10.80342 -10.63156 -10.48727 -10.35745 -10.30184 -9.15800 -9.08190 -8.85701 -8.61725 -8.07874 -7.80790 -6.18628 -4.28858 0.80860 1.18919 1.48844 2.19002 2.40848 3.03796 3.19084 3.19838 3.26995 3.28162 3.71287 3.77258 3.92465 4.19197 4.29249 4.68776 4.78926 4.99365 5.03713 5.10571 5.14392 5.24111 5.33157 5.42715 5.44924 5.46469 5.57190 5.64429 5.68095 5.78188 6.00180 6.05188 6.10471 6.24610 6.33867 6.49214 6.53422 6.73716 6.75173 6.88948 7.07220 7.32444 7.38145 7.48147 7.60785 7.82658 8.07266 8.10903 8.50018 8.67562 8.93954 9.38774 10.87105 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.003206 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.621502 B = 8732.846389 C =10702.773615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.700 5.700 13 C 0.478 3.522 14 O -0.531 6.531 15 C 0.091 3.909 16 C -0.196 4.196 17 C -0.134 4.134 18 O -0.286 6.286 19 C 0.171 3.829 20 C -0.181 4.181 21 C -0.041 4.041 22 C -0.070 4.070 23 C 0.235 3.765 24 N -0.275 5.275 25 N -0.056 5.056 26 N -0.231 5.231 27 H 0.474 0.526 28 N -0.298 5.298 29 C -0.041 4.041 30 C -0.160 4.160 31 H 0.027 0.973 32 H 0.091 0.909 33 H 0.015 0.985 34 H 0.265 0.735 35 H 0.389 0.611 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.034 0.096 -13.602 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.350 5.350 13 C 0.261 3.739 14 O -0.408 6.408 15 C 0.049 3.951 16 C -0.253 4.253 17 C -0.191 4.191 18 O -0.198 6.198 19 C 0.125 3.875 20 C -0.200 4.200 21 C -0.061 4.061 22 C -0.074 4.074 23 C -0.044 4.044 24 N -0.148 5.148 25 N -0.051 5.051 26 N -0.077 5.077 27 H 0.328 0.672 28 N -0.149 5.149 29 C -0.062 4.062 30 C -0.179 4.179 31 H 0.046 0.954 32 H 0.109 0.891 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.222 0.778 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.159 0.841 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.898 1.572 -13.833 17.082 hybrid contribution 0.529 -0.895 1.852 2.124 sum 10.427 0.677 -11.982 15.898 Atomic orbital electron populations 1.22078 0.98350 0.99172 1.01008 1.18781 0.91115 0.93970 0.79737 0.93281 1.21182 1.32677 1.13326 0.90247 0.92045 1.24880 0.94727 0.94928 0.99066 1.69898 1.35642 1.22360 1.23975 0.86455 0.78643 0.79835 0.82215 1.20536 1.21051 1.19814 1.46603 1.64562 1.13519 1.10315 1.20740 0.79841 0.88071 0.85231 1.90777 1.50311 1.15348 1.84402 1.21930 0.97752 0.89266 0.86167 1.22836 0.95250 1.03296 1.03904 1.21778 0.99072 0.95009 1.03278 1.86132 1.60351 1.32854 1.40469 1.19024 0.88160 0.86893 0.93462 1.21527 1.00063 1.01034 0.97343 1.20923 0.95649 0.92078 0.97468 1.17046 1.00836 0.93168 0.96332 1.23706 0.97999 0.97186 0.85479 1.76049 1.10979 1.02176 1.25601 1.78844 1.11873 1.20219 0.94151 1.47701 1.31819 1.17254 1.10899 0.67236 1.75001 1.11010 1.03028 1.25902 1.20821 0.93430 0.95759 0.96154 1.20231 1.03343 0.95834 0.98487 0.95402 0.89084 0.96621 0.92504 0.77843 0.89906 0.90518 0.89688 0.90818 0.90647 0.89683 0.84076 0.84956 0.84383 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.22 16 2 C 0.27 6.43 2.56 -69.08 -0.18 6.25 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.54 -13.55 8.73 -34.44 -0.30 -13.85 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.25 11.32 55.43 0.63 -23.62 16 8 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 12 N -0.70 -13.45 4.77 -54.93 -0.26 -13.71 16 13 C 0.48 8.94 4.55 -10.98 -0.05 8.89 16 14 O -0.53 -12.16 13.58 -14.35 -0.19 -12.36 16 15 C 0.09 1.29 0.96 -91.77 -0.09 1.20 16 16 C -0.20 -2.28 8.09 37.16 0.30 -1.98 16 17 C -0.13 -1.51 8.78 37.16 0.33 -1.18 16 18 O -0.29 -4.44 9.61 -39.25 -0.38 -4.82 16 19 C 0.17 2.69 5.56 -39.14 -0.22 2.47 16 20 C -0.18 -2.96 5.57 -39.48 -0.22 -3.18 16 21 C -0.04 -0.63 9.69 -39.29 -0.38 -1.01 16 22 C -0.07 -1.02 5.88 -104.87 -0.62 -1.64 16 23 C 0.24 3.34 7.93 -156.29 -1.24 2.10 16 24 N -0.27 -3.81 12.23 32.15 0.39 -3.42 16 25 N -0.06 -0.66 13.47 60.35 0.81 0.15 16 26 N -0.23 -2.22 7.90 60.35 0.48 -1.75 16 27 H 0.47 2.18 8.96 -340.36 -3.05 -0.87 16 28 N -0.30 -3.83 12.08 32.17 0.39 -3.44 16 29 C -0.04 -0.55 9.70 -39.29 -0.38 -0.93 16 30 C -0.16 -2.18 9.97 -39.48 -0.39 -2.58 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.39 6.31 7.24 -40.82 -0.30 6.01 16 36 H 0.08 0.88 7.37 -51.93 -0.38 0.50 16 37 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 38 H 0.08 1.07 4.68 -51.93 -0.24 0.83 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.85 7.43 -51.93 -0.39 0.46 16 42 H 0.14 2.45 3.77 -52.49 -0.20 2.25 16 43 H 0.13 1.96 7.88 -52.49 -0.41 1.54 16 44 H 0.14 1.56 7.88 -52.49 -0.41 1.15 16 45 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -32.81 372.02 -8.91 -41.72 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -8.17 Total: 7.63 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -3.19 Total: -6.98 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 2.44 Total: -45.78 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.57 Total: -17.17 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.81 -8.91 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820220924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.560 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.00 seconds