Wall clock time and date at job start Wed Apr 1 2020 04:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47336 * 2 1 4 4 C 1.50705 * 109.47363 * 120.00405 * 2 1 3 5 5 H 1.07999 * 119.99917 * 119.99876 * 4 2 1 6 6 C 1.37869 * 119.99765 * 300.00203 * 4 2 1 7 7 N 1.31515 * 120.00465 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99987 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47330 * 89.99679 * 8 6 4 10 10 H 1.48502 * 109.47252 * 210.00045 * 8 6 4 11 11 H 1.48498 * 109.46721 * 329.99727 * 8 6 4 12 12 N 1.46504 * 109.47323 * 240.00192 * 2 1 3 13 13 C 1.34785 * 119.99582 * 84.99897 * 12 2 1 14 14 O 1.21282 * 120.00164 * 359.97438 * 13 12 2 15 15 C 1.50696 * 119.99677 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.47280 * 299.99906 * 15 13 12 17 17 C 1.53002 * 109.47340 * 59.99930 * 15 13 12 18 18 O 1.42901 * 109.47097 * 179.97438 * 15 13 12 19 19 C 1.35873 * 117.00016 * 61.74855 * 18 15 13 20 20 C 1.38833 * 119.93731 * 354.03190 * 19 18 15 21 21 C 1.37911 * 120.05842 * 179.76908 * 20 19 18 22 22 C 1.39338 * 119.94163 * 0.50342 * 21 20 19 23 23 C 1.48433 * 120.06354 * 179.77020 * 22 21 20 24 24 N 1.34063 * 126.67429 * 180.02562 * 23 22 21 25 25 N 1.28980 * 107.26123 * 179.97438 * 24 23 22 26 26 N 1.28733 * 108.95348 * 359.97438 * 25 24 23 27 27 H 0.96999 * 125.33967 * 179.97438 * 26 25 24 28 28 N 1.28876 * 109.31671 * 359.77181 * 26 25 24 29 29 C 1.39348 * 119.87470 * 359.75108 * 22 21 20 30 30 C 1.37912 * 119.93934 * 359.97438 * 29 22 21 31 31 H 1.08999 * 109.46863 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47014 * 299.99586 * 1 2 3 33 33 H 1.08998 * 109.47496 * 59.99650 * 1 2 3 34 34 H 0.96998 * 120.00595 * 180.02562 * 7 6 4 35 35 H 0.96998 * 120.00614 * 265.00465 * 12 2 1 36 36 H 1.09005 * 109.46836 * 52.60709 * 16 15 13 37 37 H 1.08999 * 109.47164 * 172.61037 * 16 15 13 38 38 H 1.09002 * 109.46969 * 292.60774 * 16 15 13 39 39 H 1.08997 * 109.47363 * 64.79859 * 17 15 13 40 40 H 1.09001 * 109.47200 * 184.79799 * 17 15 13 41 41 H 1.08997 * 109.46998 * 304.79649 * 17 15 13 42 42 H 1.08002 * 119.96398 * 0.02562 * 20 19 18 43 43 H 1.08000 * 120.02701 * 180.26104 * 21 20 19 44 44 H 1.07997 * 120.02833 * 180.02562 * 29 22 21 45 45 H 1.08000 * 119.97085 * 179.97438 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9435 0.8300 2.6035 8 14 2.3226 -1.1198 4.0078 9 1 3.6305 -0.5443 4.4118 10 1 1.3445 -0.9494 5.1122 11 1 2.4881 -2.5655 3.7120 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8581 1.1586 -2.4117 15 6 2.6489 -0.7285 -3.5878 16 6 4.0513 -1.2795 -3.3224 17 6 1.7044 -1.8821 -3.9315 18 8 2.6965 0.1896 -4.6817 19 6 3.5231 1.2603 -4.5530 20 6 4.1775 1.4896 -3.3502 21 6 5.0208 2.5729 -3.2183 22 6 5.2075 3.4435 -4.2900 23 6 6.1106 4.6131 -4.1494 24 7 6.3852 5.5301 -5.0879 25 7 7.2096 6.3749 -4.5680 26 7 7.4570 6.0247 -3.3542 27 1 8.0476 6.4938 -2.7442 28 7 6.7936 4.9556 -3.0752 29 6 4.5452 3.2138 -5.4944 30 6 3.7075 2.1258 -5.6226 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 0.7095 1.1615 3.4845 35 1 2.2490 -1.6317 -1.1528 36 1 4.0407 -1.8760 -2.4101 37 1 4.3613 -1.9032 -4.1608 38 1 4.7511 -0.4517 -3.2071 39 1 0.7273 -1.4830 -4.2036 40 1 2.1118 -2.4479 -4.7694 41 1 1.6012 -2.5373 -3.0666 42 1 4.0293 0.8167 -2.5186 43 1 5.5329 2.7484 -2.2838 44 1 4.6885 3.8867 -6.3268 45 1 3.1937 1.9475 -6.5557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820220924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:14 Heat of formation + Delta-G solvation = 65.744028 kcal Electronic energy + Delta-G solvation = -30375.260474 eV Core-core repulsion = 26203.035704 eV Total energy + Delta-G solvation = -4172.224770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.45175 -42.38055 -40.05361 -38.61167 -36.67928 -35.42002 -35.09962 -34.35510 -33.75458 -32.11747 -30.91065 -30.46094 -28.38739 -27.34398 -25.75542 -25.49366 -24.94001 -23.64074 -22.80036 -22.21599 -20.98805 -20.21577 -19.80433 -18.21517 -18.13815 -17.74605 -17.48971 -17.27606 -16.85449 -16.29669 -16.06981 -15.42553 -15.35375 -15.11015 -14.92972 -14.53575 -14.46074 -14.13761 -13.92433 -13.79377 -13.48988 -13.37776 -13.29047 -13.14212 -13.07107 -12.97019 -12.92317 -12.83860 -12.75555 -12.38858 -12.27947 -12.23702 -12.15081 -12.03359 -11.75963 -11.55402 -11.11560 -10.65432 -10.51709 -10.02378 -9.76069 -9.00737 -8.17465 -6.35208 -0.25624 0.18384 0.35639 1.30756 1.42580 1.45371 1.45655 1.56139 1.64420 2.01810 2.29090 2.49435 2.68832 2.78612 3.13417 3.16019 3.68707 3.72653 3.75333 3.89589 3.91124 4.15613 4.25567 4.39673 4.42986 4.57268 4.61826 4.67286 4.74595 4.75391 4.82579 4.90733 4.97904 5.08808 5.11871 5.15225 5.21381 5.34531 5.40591 5.42159 5.58091 5.61067 5.62620 5.67564 5.87783 6.08706 6.26598 6.72215 6.87878 7.11631 7.30727 7.47480 8.88530 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.003206 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.621502 B = 8732.846389 C =10702.773615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.274 3.726 3 H -0.003 1.003 4 C -0.544 4.544 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.970 3.030 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.257 1.257 12 N -0.694 5.694 13 C 0.476 3.524 14 O -0.579 6.579 15 C 0.097 3.903 16 C -0.192 4.192 17 C -0.133 4.133 18 O -0.291 6.291 19 C 0.154 3.846 20 C -0.193 4.193 21 C -0.054 4.054 22 C -0.074 4.074 23 C 0.222 3.778 24 N -0.290 5.290 25 N -0.054 5.054 26 N -0.203 5.203 27 H 0.493 0.507 28 N -0.308 5.308 29 C -0.036 4.036 30 C -0.156 4.156 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.009 0.991 34 H 0.264 0.736 35 H 0.406 0.594 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.160 0.840 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.298 -1.638 -14.643 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.171 3.829 3 H 0.015 0.985 4 C -0.582 4.582 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.794 3.206 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.180 1.180 12 N -0.345 5.345 13 C 0.262 3.738 14 O -0.459 6.459 15 C 0.055 3.945 16 C -0.249 4.249 17 C -0.190 4.190 18 O -0.203 6.203 19 C 0.108 3.892 20 C -0.212 4.212 21 C -0.074 4.074 22 C -0.078 4.078 23 C -0.058 4.058 24 N -0.163 5.163 25 N -0.049 5.049 26 N -0.053 5.053 27 H 0.352 0.648 28 N -0.160 5.160 29 C -0.056 4.056 30 C -0.174 4.174 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.242 0.758 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.126 0.874 41 H 0.118 0.882 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.177 0.823 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.194 -0.193 -14.895 18.633 hybrid contribution 0.195 -0.228 2.166 2.186 sum 11.389 -0.422 -12.729 17.085 Atomic orbital electron populations 1.21903 0.98446 0.99581 0.99397 1.18313 0.90960 0.91844 0.81782 0.98507 1.21536 1.32503 1.13598 0.90572 0.90474 1.25781 0.94856 0.95545 1.02330 1.70059 1.37041 1.24005 1.24531 0.85377 0.77661 0.79392 0.78120 1.20500 1.21270 1.18045 1.46276 1.64670 1.14193 1.09338 1.21647 0.78361 0.87588 0.86202 1.90749 1.52179 1.17718 1.85296 1.22091 0.99788 0.89137 0.83468 1.22844 0.93027 1.03248 1.05741 1.21893 0.97836 0.94029 1.05218 1.86127 1.60515 1.33080 1.40620 1.19247 0.88521 0.87650 0.93818 1.21434 1.00995 1.01343 0.97414 1.20928 0.96134 0.92492 0.97885 1.17177 1.00965 0.93117 0.96499 1.23674 0.98613 0.97491 0.85987 1.76026 1.11770 1.02474 1.26029 1.78780 1.11592 1.19826 0.94695 1.47742 1.30782 1.16151 1.10644 0.64778 1.74965 1.11283 1.03928 1.25864 1.21079 0.92576 0.95764 0.96214 1.20561 1.02893 0.95071 0.98876 0.93763 0.91656 0.97217 0.92661 0.75802 0.88823 0.87446 0.91032 0.91948 0.87407 0.88206 0.85751 0.85383 0.82256 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.68 9.26 71.98 0.67 -6.02 16 2 C 0.27 13.70 2.56 44.24 0.11 13.82 16 3 H 0.00 -0.18 7.58 -2.39 -0.02 -0.20 16 4 C -0.54 -27.57 8.73 25.60 0.22 -27.35 16 5 H 0.08 3.58 7.74 -2.91 -0.02 3.56 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -51.96 11.32 21.44 0.24 -51.71 16 8 Si 0.97 40.82 29.54 68.60 2.03 42.84 16 9 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 10 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 12 N -0.69 -26.78 4.77 -446.08 -2.13 -28.91 16 13 C 0.48 18.07 4.55 87.65 0.40 18.47 16 14 O -0.58 -27.74 13.58 16.00 0.22 -27.52 16 15 C 0.10 2.64 0.96 -11.54 -0.01 2.63 16 16 C -0.19 -4.10 8.09 71.98 0.58 -3.52 16 17 C -0.13 -2.65 8.78 71.98 0.63 -2.01 16 18 O -0.29 -8.78 9.61 -73.09 -0.70 -9.48 16 19 C 0.15 4.81 5.56 22.55 0.13 4.94 16 20 C -0.19 -6.52 5.57 22.33 0.12 -6.40 16 21 C -0.05 -1.73 9.69 22.46 0.22 -1.51 16 22 C -0.07 -2.16 5.88 -20.03 -0.12 -2.27 16 23 C 0.22 6.20 7.93 137.36 1.09 7.29 16 24 N -0.29 -7.79 12.23 -52.19 -0.64 -8.43 16 25 N -0.05 -1.21 13.47 37.02 0.50 -0.71 16 26 N -0.20 -3.65 7.90 37.02 0.29 -3.35 16 27 H 0.49 3.75 8.96 -347.53 -3.12 0.63 16 28 N -0.31 -7.76 12.08 -52.14 -0.63 -8.39 16 29 C -0.04 -0.93 9.70 22.46 0.22 -0.71 16 30 C -0.16 -4.07 9.97 22.33 0.22 -3.84 16 31 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 3.59 6.07 -2.39 -0.01 3.58 16 33 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.41 12.66 7.24 -92.71 -0.67 11.99 16 36 H 0.09 1.78 7.37 -2.38 -0.02 1.76 16 37 H 0.11 1.66 8.13 -2.39 -0.02 1.64 16 38 H 0.07 1.77 4.68 -2.39 -0.01 1.76 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 1.48 8.14 -2.39 -0.02 1.47 16 41 H 0.10 1.69 7.43 -2.39 -0.02 1.67 16 42 H 0.12 4.53 3.77 -2.91 -0.01 4.52 16 43 H 0.13 4.04 7.88 -2.91 -0.02 4.02 16 44 H 0.16 3.33 7.88 -2.91 -0.02 3.31 16 45 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -73.80 372.02 1.40 -72.40 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -2.72 Total: 28.51 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 4.93 Total: -5.26 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -2.36 Total: -101.50 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.49 Total: -37.00 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Total: -73.80 1.40 -72.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820220924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.147 kcal (2) G-P(sol) polarization free energy of solvation -73.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds