Wall clock time and date at job start Wed Apr 1 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.60873 * 2 1 4 4 C 1.53377 * 109.60812 * 239.66351 * 2 1 3 5 5 N 1.46961 * 108.63121 * 190.83105 * 4 2 1 6 6 C 1.34781 * 120.59406 * 235.19710 * 5 4 2 7 7 O 1.21582 * 119.99622 * 3.93109 * 6 5 4 8 8 N 1.34768 * 120.00228 * 183.92575 * 6 5 4 9 9 C 1.39457 * 120.00131 * 181.41250 * 8 6 5 10 10 C 1.36489 * 120.68585 * 338.93941 * 9 8 6 11 11 C 1.39706 * 121.75944 * 179.97438 * 10 9 8 12 12 C 1.35561 * 122.70800 * 0.27367 * 11 10 9 13 13 C 1.40696 * 120.08271 * 359.45286 * 12 11 10 14 14 N 1.31054 * 138.75248 * 180.13982 * 13 12 11 15 15 O 1.21504 * 109.06476 * 180.34942 * 14 13 12 16 16 N 1.21511 * 116.27054 * 359.97438 * 15 14 13 17 17 C 1.30652 * 109.09652 * 0.02562 * 16 15 14 18 18 C 1.46966 * 118.81515 * 55.48075 * 5 4 2 19 19 C 1.53817 * 108.39534 * 304.47954 * 18 5 4 20 20 H 1.09000 * 109.67332 * 169.38878 * 19 18 5 21 21 C 1.53000 * 109.73842 * 289.85006 * 19 18 5 22 22 N 1.46961 * 109.61188 * 120.51493 * 2 1 3 23 23 C 1.36942 * 120.59243 * 354.94943 * 22 2 1 24 24 H 1.07995 * 119.99816 * 34.06601 * 23 22 2 25 25 C 1.38815 * 119.99588 * 214.06618 * 23 22 2 26 26 N 1.31608 * 120.00172 * 12.85987 * 25 23 22 27 27 Si 1.86800 * 119.99578 * 192.85866 * 25 23 22 28 28 H 1.48508 * 109.47298 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47117 * 120.00111 * 27 25 23 30 30 H 1.48503 * 109.46939 * 240.00096 * 27 25 23 31 31 H 1.08996 * 109.47033 * 180.33643 * 1 2 3 32 32 H 1.09001 * 109.47154 * 300.33860 * 1 2 3 33 33 H 1.08998 * 109.47313 * 60.33569 * 1 2 3 34 34 H 1.08997 * 109.61061 * 71.08708 * 4 2 1 35 35 H 1.09002 * 109.60550 * 310.57102 * 4 2 1 36 36 H 0.97004 * 120.00171 * 1.40809 * 8 6 5 37 37 H 1.07999 * 119.11639 * 359.97438 * 10 9 8 38 38 H 1.08004 * 118.64547 * 180.02562 * 11 10 9 39 39 H 1.07996 * 119.96055 * 179.70722 * 12 11 10 40 40 H 1.08993 * 109.61066 * 64.25930 * 18 5 4 41 41 H 1.08996 * 109.61019 * 184.77636 * 18 5 4 42 42 H 1.09002 * 109.46766 * 179.15939 * 21 19 18 43 43 H 1.08998 * 109.47139 * 299.15207 * 21 19 18 44 44 H 1.08997 * 109.47582 * 59.15926 * 21 19 18 45 45 H 0.97003 * 120.00172 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0447 -0.7297 -1.2470 5 7 3.4908 -0.9472 -1.1004 6 6 4.3492 -0.5102 -2.0431 7 8 3.9371 0.1318 -2.9898 8 7 5.6643 -0.7848 -1.9363 9 6 6.5564 -0.3076 -2.8961 10 6 6.1173 0.0530 -4.1371 11 6 6.9911 0.5342 -5.1153 12 6 8.3233 0.6701 -4.9046 13 6 8.8780 0.3317 -3.6566 14 7 10.0502 0.3172 -3.0708 15 8 9.9217 -0.0981 -1.9362 16 7 8.7938 -0.3974 -1.5976 17 6 7.9770 -0.1827 -2.5945 18 6 3.9836 -1.6551 0.0895 19 6 3.4693 -0.9204 1.3392 20 1 3.6603 -1.5257 2.2253 21 6 4.1801 0.4276 1.4751 22 7 2.0233 -0.7029 1.1926 23 6 1.1511 -1.1470 2.1504 24 1 0.1699 -1.4976 1.8664 25 6 1.5283 -1.1465 3.4863 26 7 2.6070 -0.4947 3.8653 27 14 0.5046 -2.0708 4.7461 28 1 -0.6492 -2.7159 4.0693 29 1 1.3415 -3.1104 5.3974 30 1 0.0073 -1.1205 5.7732 31 1 -0.3633 -1.0276 0.0060 32 1 -0.3633 0.5191 0.8869 33 1 -0.3634 0.5086 -0.8929 34 1 1.8540 -0.1219 -2.1314 35 1 1.5384 -1.6901 -1.3438 36 1 5.9903 -1.3143 -1.1918 37 1 5.0662 -0.0359 -4.3690 38 1 6.5892 0.8054 -6.0804 39 1 8.9590 1.0424 -5.6942 40 1 3.6121 -2.6798 0.0855 41 1 5.0735 -1.6585 0.0879 42 1 3.8018 0.9508 2.3534 43 1 5.2522 0.2637 1.5837 44 1 3.9927 1.0287 0.5854 45 1 2.8704 -0.4941 4.7989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879471418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:42 Heat of formation + Delta-G solvation = 163.307419 kcal Electronic energy + Delta-G solvation = -31090.440079 eV Core-core repulsion = 26922.445975 eV Total energy + Delta-G solvation = -4167.994104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -46.74486 -40.87988 -38.75161 -37.51009 -35.41986 -34.53285 -34.19644 -33.22945 -32.77018 -31.33162 -29.80929 -28.00665 -26.55313 -25.93641 -25.35050 -24.95573 -23.77066 -21.61116 -21.19164 -20.58269 -19.41680 -19.03786 -18.74235 -18.54319 -17.64362 -16.71947 -16.05878 -16.00765 -15.41903 -15.31230 -14.83879 -14.50794 -14.11093 -14.08552 -13.66062 -13.40026 -13.20564 -13.14461 -12.86100 -12.68737 -12.22948 -12.09096 -11.97573 -11.85785 -11.77911 -11.53651 -11.21430 -11.12616 -10.87461 -10.72355 -10.65262 -10.61257 -10.31274 -10.20969 -10.01700 -9.89740 -9.74485 -9.52603 -8.61646 -8.46733 -7.91564 -6.67878 -5.91089 -3.41901 -0.07502 1.02618 1.72153 2.38032 2.88504 2.98057 3.28278 3.28417 3.37757 3.38430 3.39291 3.59353 3.87348 4.36951 4.39608 4.71253 4.84024 5.01536 5.08854 5.25058 5.28282 5.49393 5.59636 5.64397 5.64595 5.87801 5.90125 5.94407 6.01166 6.04315 6.12703 6.21383 6.29720 6.36113 6.48766 6.58222 6.61253 6.67589 6.80169 6.85631 7.01389 7.05272 7.37067 7.56604 7.74020 7.87250 8.30770 8.34947 8.47111 9.08606 9.68251 10.28040 11.15846 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.002986 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.393333 B = 9374.391297 C =10566.662066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.154 3.846 3 H 0.032 0.968 4 C 0.116 3.884 5 N -0.599 5.599 6 C 0.705 3.295 7 O -0.578 6.578 8 N -0.673 5.673 9 C 0.236 3.764 10 C -0.151 4.151 11 C -0.037 4.037 12 C -0.123 4.123 13 C 0.051 3.949 14 N -0.356 5.356 15 O 0.366 5.634 16 N -0.335 5.335 17 C -0.004 4.004 18 C 0.085 3.915 19 C 0.184 3.816 20 H 0.104 0.896 21 C -0.144 4.144 22 N -0.579 5.579 23 C -0.256 4.256 24 H 0.070 0.930 25 C 0.010 3.990 26 N -0.896 5.896 27 Si 0.901 3.099 28 H -0.277 1.277 29 H -0.289 1.289 30 H -0.290 1.290 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.414 0.586 37 H 0.184 0.816 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.025 0.975 44 H 0.023 0.977 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.037 -0.768 -14.773 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.046 3.954 3 H 0.050 0.950 4 C -0.008 4.008 5 N -0.333 5.333 6 C 0.408 3.592 7 O -0.458 6.458 8 N -0.318 5.318 9 C 0.135 3.865 10 C -0.177 4.177 11 C -0.060 4.060 12 C -0.145 4.145 13 C -0.102 4.102 14 N -0.082 5.082 15 O 0.132 5.868 16 N -0.055 5.055 17 C -0.161 4.161 18 C -0.039 4.039 19 C 0.076 3.924 20 H 0.121 0.879 21 C -0.203 4.203 22 N -0.302 5.302 23 C -0.386 4.386 24 H 0.088 0.912 25 C -0.190 4.190 26 N -0.540 5.540 27 Si 0.731 3.269 28 H -0.202 1.202 29 H -0.216 1.216 30 H -0.217 1.217 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.253 0.747 37 H 0.200 0.800 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.044 0.956 44 H 0.042 0.958 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.574 -0.460 -14.372 16.742 hybrid contribution -0.709 -0.571 0.831 1.233 sum 7.865 -1.031 -13.540 15.693 Atomic orbital electron populations 1.21734 0.95028 1.01692 1.00696 1.20830 0.93430 0.94114 0.86993 0.95005 1.22300 0.77083 1.00956 1.00475 1.47273 1.07162 1.58294 1.20534 1.15732 0.79993 0.80136 0.83380 1.90721 1.76519 1.45124 1.33408 1.42749 1.06195 1.54886 1.27988 1.17036 0.82095 0.98157 0.89256 1.21737 1.04167 1.01870 0.89938 1.20824 0.91684 0.93921 0.99542 1.19717 0.95487 1.06055 0.93225 1.22706 0.87222 1.01925 0.98341 1.75246 1.21180 1.17477 0.94249 1.85387 1.24148 1.54241 1.22981 1.75084 0.91801 1.16904 1.21707 1.23757 0.96865 1.04824 0.90608 1.22779 0.96952 0.96940 0.87247 1.20716 0.83704 0.94688 0.93308 0.87871 1.22054 0.97217 0.99472 1.01557 1.44075 1.01514 1.64373 1.20236 1.19159 0.97997 1.35891 0.85520 0.91232 1.25217 0.97906 0.98575 0.97266 1.69953 1.25957 1.42200 1.15848 0.86252 0.79786 0.79295 0.81557 1.20234 1.21594 1.21708 0.92549 0.91559 0.93979 0.89688 0.91668 0.74739 0.79963 0.83895 0.84063 0.91180 0.92233 0.89865 0.95596 0.95787 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 7.99 37.16 0.30 -2.02 16 2 C 0.15 2.97 3.22 -67.48 -0.22 2.75 16 3 H 0.03 0.68 7.41 -51.93 -0.38 0.30 16 4 C 0.12 1.96 5.91 -3.60 -0.02 1.94 16 5 N -0.60 -9.97 2.58 -177.94 -0.46 -10.43 16 6 C 0.70 11.48 8.20 -86.92 -0.71 10.76 16 7 O -0.58 -10.20 12.56 5.29 0.07 -10.13 16 8 N -0.67 -9.53 5.29 -13.11 -0.07 -9.60 16 9 C 0.24 3.20 6.67 -82.02 -0.55 2.65 16 10 C -0.15 -1.83 8.78 -39.66 -0.35 -2.18 16 11 C -0.04 -0.34 9.84 -39.99 -0.39 -0.73 16 12 C -0.12 -1.18 10.03 -39.61 -0.40 -1.57 16 13 C 0.05 0.63 7.77 -83.05 -0.64 -0.01 16 14 N -0.36 -4.51 12.29 31.89 0.39 -4.11 16 15 O 0.37 4.64 11.67 26.92 0.31 4.95 16 16 N -0.34 -4.56 12.27 32.74 0.40 -4.16 16 17 C 0.00 -0.06 7.90 -81.14 -0.64 -0.70 16 18 C 0.09 1.42 5.96 -3.36 -0.02 1.40 16 19 C 0.18 3.81 2.34 -67.25 -0.16 3.65 16 20 H 0.10 2.43 6.30 -51.93 -0.33 2.10 16 21 C -0.14 -3.02 8.95 37.16 0.33 -2.69 16 22 N -0.58 -12.81 2.66 -156.76 -0.42 -13.22 16 23 C -0.26 -6.24 8.45 -15.06 -0.13 -6.37 16 24 H 0.07 1.68 6.36 -52.49 -0.33 1.35 16 25 C 0.01 0.25 4.98 -17.43 -0.09 0.16 16 26 N -0.90 -23.52 10.07 55.49 0.56 -22.96 16 27 Si 0.90 20.20 29.57 -169.99 -5.03 15.18 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 30 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 31 H 0.06 0.97 7.30 -51.93 -0.38 0.59 16 32 H 0.07 1.26 7.75 -51.93 -0.40 0.86 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.40 6.99 -51.93 -0.36 1.04 16 35 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 36 H 0.41 5.43 6.28 -40.82 -0.26 5.17 16 37 H 0.18 2.43 5.21 -52.59 -0.27 2.16 16 38 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 0.86 5.61 -51.93 -0.29 0.56 16 42 H 0.08 2.02 6.96 -51.93 -0.36 1.65 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.50 7.02 -51.93 -0.36 0.13 16 45 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 357.42 15.07 5.39 5.39 Total: -1.00 -27.56 357.42 -7.95 -35.51 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.41 Total: 6.55 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -3.69 Total: 7.04 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: 0.41 Total: -64.49 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: 0.38 Total: -5.18 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.56 -7.95 -35.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879471418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.817 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds