Wall clock time and date at job start Wed Apr 1 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.60873 * 2 1 4 4 C 1.53377 * 109.60812 * 239.66351 * 2 1 3 5 5 N 1.46961 * 108.63121 * 190.83105 * 4 2 1 6 6 C 1.34781 * 120.59406 * 235.19710 * 5 4 2 7 7 O 1.21582 * 119.99622 * 3.93109 * 6 5 4 8 8 N 1.34768 * 120.00228 * 183.92575 * 6 5 4 9 9 C 1.39457 * 120.00131 * 181.41250 * 8 6 5 10 10 C 1.36489 * 120.68585 * 338.93941 * 9 8 6 11 11 C 1.39706 * 121.75944 * 179.97438 * 10 9 8 12 12 C 1.35561 * 122.70800 * 0.27367 * 11 10 9 13 13 C 1.40696 * 120.08271 * 359.45286 * 12 11 10 14 14 N 1.31054 * 138.75248 * 180.13982 * 13 12 11 15 15 O 1.21504 * 109.06476 * 180.34942 * 14 13 12 16 16 N 1.21511 * 116.27054 * 359.97438 * 15 14 13 17 17 C 1.30652 * 109.09652 * 0.02562 * 16 15 14 18 18 C 1.46966 * 118.81515 * 55.48075 * 5 4 2 19 19 C 1.53817 * 108.39534 * 304.47954 * 18 5 4 20 20 H 1.09000 * 109.67332 * 169.38878 * 19 18 5 21 21 C 1.53000 * 109.73842 * 289.85006 * 19 18 5 22 22 N 1.46961 * 109.61188 * 120.51493 * 2 1 3 23 23 C 1.36942 * 120.59243 * 354.94943 * 22 2 1 24 24 H 1.07995 * 119.99816 * 34.06601 * 23 22 2 25 25 C 1.38815 * 119.99588 * 214.06618 * 23 22 2 26 26 N 1.31608 * 120.00172 * 12.85987 * 25 23 22 27 27 Si 1.86800 * 119.99578 * 192.85866 * 25 23 22 28 28 H 1.48508 * 109.47298 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47117 * 120.00111 * 27 25 23 30 30 H 1.48503 * 109.46939 * 240.00096 * 27 25 23 31 31 H 1.08996 * 109.47033 * 180.33643 * 1 2 3 32 32 H 1.09001 * 109.47154 * 300.33860 * 1 2 3 33 33 H 1.08998 * 109.47313 * 60.33569 * 1 2 3 34 34 H 1.08997 * 109.61061 * 71.08708 * 4 2 1 35 35 H 1.09002 * 109.60550 * 310.57102 * 4 2 1 36 36 H 0.97004 * 120.00171 * 1.40809 * 8 6 5 37 37 H 1.07999 * 119.11639 * 359.97438 * 10 9 8 38 38 H 1.08004 * 118.64547 * 180.02562 * 11 10 9 39 39 H 1.07996 * 119.96055 * 179.70722 * 12 11 10 40 40 H 1.08993 * 109.61066 * 64.25930 * 18 5 4 41 41 H 1.08996 * 109.61019 * 184.77636 * 18 5 4 42 42 H 1.09002 * 109.46766 * 179.15939 * 21 19 18 43 43 H 1.08998 * 109.47139 * 299.15207 * 21 19 18 44 44 H 1.08997 * 109.47582 * 59.15926 * 21 19 18 45 45 H 0.97003 * 120.00172 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0447 -0.7297 -1.2470 5 7 3.4908 -0.9472 -1.1004 6 6 4.3492 -0.5102 -2.0431 7 8 3.9371 0.1318 -2.9898 8 7 5.6643 -0.7848 -1.9363 9 6 6.5564 -0.3076 -2.8961 10 6 6.1173 0.0530 -4.1371 11 6 6.9911 0.5342 -5.1153 12 6 8.3233 0.6701 -4.9046 13 6 8.8780 0.3317 -3.6566 14 7 10.0502 0.3172 -3.0708 15 8 9.9217 -0.0981 -1.9362 16 7 8.7938 -0.3974 -1.5976 17 6 7.9770 -0.1827 -2.5945 18 6 3.9836 -1.6551 0.0895 19 6 3.4693 -0.9204 1.3392 20 1 3.6603 -1.5257 2.2253 21 6 4.1801 0.4276 1.4751 22 7 2.0233 -0.7029 1.1926 23 6 1.1511 -1.1470 2.1504 24 1 0.1699 -1.4976 1.8664 25 6 1.5283 -1.1465 3.4863 26 7 2.6070 -0.4947 3.8653 27 14 0.5046 -2.0708 4.7461 28 1 -0.6492 -2.7159 4.0693 29 1 1.3415 -3.1104 5.3974 30 1 0.0073 -1.1205 5.7732 31 1 -0.3633 -1.0276 0.0060 32 1 -0.3633 0.5191 0.8869 33 1 -0.3634 0.5086 -0.8929 34 1 1.8540 -0.1219 -2.1314 35 1 1.5384 -1.6901 -1.3438 36 1 5.9903 -1.3143 -1.1918 37 1 5.0662 -0.0359 -4.3690 38 1 6.5892 0.8054 -6.0804 39 1 8.9590 1.0424 -5.6942 40 1 3.6121 -2.6798 0.0855 41 1 5.0735 -1.6585 0.0879 42 1 3.8018 0.9508 2.3534 43 1 5.2522 0.2637 1.5837 44 1 3.9927 1.0287 0.5854 45 1 2.8704 -0.4941 4.7989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879471418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:41 Heat of formation + Delta-G solvation = 148.247788 kcal Electronic energy + Delta-G solvation = -31091.093114 eV Core-core repulsion = 26922.445975 eV Total energy + Delta-G solvation = -4168.647138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -47.70264 -42.09370 -39.93006 -38.80216 -36.48481 -35.87769 -35.40769 -34.33719 -34.13353 -33.06678 -30.84387 -29.69819 -27.91578 -27.23797 -26.54197 -25.89986 -25.44507 -22.75972 -22.73900 -21.65554 -20.81081 -20.01275 -19.94653 -19.75426 -18.70957 -17.95131 -17.57875 -17.21064 -16.79662 -16.63004 -16.05590 -15.81698 -15.64098 -15.48197 -15.13812 -14.86969 -14.57998 -14.14014 -13.98661 -13.65734 -13.57452 -13.54779 -13.09976 -13.00317 -12.96645 -12.89068 -12.83123 -12.68976 -12.44713 -12.32785 -12.28935 -12.04627 -11.80479 -11.70727 -11.59950 -11.33752 -11.01369 -10.75661 -10.48345 -9.85463 -8.92841 -8.46027 -7.80401 -5.32777 -0.98953 0.10508 0.76772 1.23171 1.48116 1.53079 1.60223 1.86130 1.95127 2.30053 2.41457 2.49958 2.55831 2.81474 3.35155 3.47801 3.49305 3.79029 4.04842 4.11471 4.12176 4.17095 4.27753 4.42485 4.45240 4.52921 4.56519 4.71008 4.72467 4.75568 4.87320 4.89648 4.99791 5.06962 5.14093 5.19216 5.27771 5.35146 5.37920 5.53621 5.65927 5.67096 5.72975 5.76816 5.88450 6.48623 6.61664 7.21043 7.22714 7.35174 7.87762 8.43729 9.23527 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.002986 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.393333 B = 9374.391297 C =10566.662066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.150 3.850 3 H 0.008 0.992 4 C 0.127 3.873 5 N -0.604 5.604 6 C 0.707 3.293 7 O -0.593 6.593 8 N -0.668 5.668 9 C 0.204 3.796 10 C -0.138 4.138 11 C -0.032 4.032 12 C -0.112 4.112 13 C 0.045 3.955 14 N -0.362 5.362 15 O 0.366 5.634 16 N -0.350 5.350 17 C -0.016 4.016 18 C 0.099 3.901 19 C 0.182 3.818 20 H 0.074 0.926 21 C -0.126 4.126 22 N -0.593 5.593 23 C -0.252 4.252 24 H 0.073 0.927 25 C -0.039 4.039 26 N -0.922 5.922 27 Si 0.957 3.043 28 H -0.267 1.267 29 H -0.294 1.294 30 H -0.301 1.301 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.416 0.584 37 H 0.174 0.826 38 H 0.184 0.816 39 H 0.175 0.825 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.040 0.960 44 H 0.019 0.981 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.275 -1.114 -17.636 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.044 3.956 3 H 0.026 0.974 4 C 0.003 3.997 5 N -0.337 5.337 6 C 0.410 3.590 7 O -0.474 6.474 8 N -0.314 5.314 9 C 0.103 3.897 10 C -0.164 4.164 11 C -0.054 4.054 12 C -0.133 4.133 13 C -0.108 4.108 14 N -0.088 5.088 15 O 0.133 5.867 16 N -0.070 5.070 17 C -0.171 4.171 18 C -0.025 4.025 19 C 0.074 3.926 20 H 0.092 0.908 21 C -0.185 4.185 22 N -0.316 5.316 23 C -0.382 4.382 24 H 0.090 0.910 25 C -0.236 4.236 26 N -0.567 5.567 27 Si 0.786 3.214 28 H -0.192 1.192 29 H -0.221 1.221 30 H -0.228 1.228 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.256 0.744 37 H 0.191 0.809 38 H 0.201 0.799 39 H 0.192 0.808 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.038 0.962 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.832 -0.814 -17.268 19.413 hybrid contribution -0.738 -0.378 1.596 1.799 sum 8.094 -1.192 -15.672 17.679 Atomic orbital electron populations 1.21650 0.93535 1.01957 1.01167 1.20944 0.94752 0.92906 0.87039 0.97446 1.22121 0.77383 1.01202 0.99040 1.47233 1.07212 1.58670 1.20624 1.15740 0.80480 0.79772 0.83048 1.90714 1.77027 1.45722 1.33892 1.42576 1.05508 1.54981 1.28385 1.17208 0.82100 1.00491 0.89854 1.21878 1.04249 1.00339 0.89945 1.21186 0.91115 0.92778 1.00338 1.20192 0.95995 1.04441 0.92692 1.23167 0.86777 1.01763 0.99131 1.75221 1.21553 1.17772 0.94297 1.85369 1.23872 1.54358 1.23129 1.75047 0.92157 1.17595 1.22238 1.23877 0.97023 1.05162 0.91062 1.22517 0.98266 0.96469 0.85263 1.20624 0.83409 0.94246 0.94289 0.90819 1.21838 0.97975 0.99339 0.99392 1.44299 1.01867 1.64815 1.20645 1.19406 0.98260 1.34559 0.85978 0.90959 1.25812 0.99050 0.99853 0.98839 1.70109 1.27387 1.43821 1.15396 0.85374 0.78730 0.77840 0.79412 1.19184 1.22099 1.22842 0.92242 0.93793 0.90848 0.88880 0.90559 0.74440 0.80883 0.79871 0.80777 0.90349 0.89909 0.93575 0.94117 0.96234 0.94446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.99 71.98 0.58 -3.64 16 2 C 0.15 5.75 3.22 45.03 0.15 5.90 16 3 H 0.01 0.34 7.41 -2.39 -0.02 0.32 16 4 C 0.13 4.08 5.91 86.42 0.51 4.60 16 5 N -0.60 -19.33 2.58 -835.16 -2.16 -21.49 16 6 C 0.71 22.05 8.20 179.06 1.47 23.52 16 7 O -0.59 -19.97 12.56 -3.97 -0.05 -20.02 16 8 N -0.67 -18.19 5.29 -313.67 -1.66 -19.85 16 9 C 0.20 5.24 6.67 39.47 0.26 5.50 16 10 C -0.14 -3.02 8.78 22.22 0.19 -2.83 16 11 C -0.03 -0.46 9.84 22.00 0.22 -0.24 16 12 C -0.11 -1.73 10.03 22.25 0.22 -1.50 16 13 C 0.04 1.01 7.77 42.59 0.33 1.34 16 14 N -0.36 -8.67 12.29 -57.38 -0.71 -9.37 16 15 O 0.37 9.05 11.67 139.25 1.63 10.67 16 16 N -0.35 -9.36 12.27 -55.27 -0.68 -10.04 16 17 C -0.02 -0.40 7.90 44.00 0.35 -0.05 16 18 C 0.10 3.21 5.96 86.57 0.52 3.73 16 19 C 0.18 7.63 2.34 45.18 0.11 7.74 16 20 H 0.07 3.56 6.30 -2.39 -0.02 3.55 16 21 C -0.13 -5.42 8.95 71.98 0.64 -4.78 16 22 N -0.59 -26.42 2.66 -649.87 -1.73 -28.15 16 23 C -0.25 -12.35 8.45 84.03 0.71 -11.64 16 24 H 0.07 3.46 6.36 -2.91 -0.02 3.44 16 25 C -0.04 -2.00 4.98 84.86 0.42 -1.58 16 26 N -0.92 -50.03 10.07 21.65 0.22 -49.81 16 27 Si 0.96 42.23 29.57 68.60 2.03 44.26 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 30 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 31 H 0.06 1.95 7.30 -2.39 -0.02 1.94 16 32 H 0.04 1.65 7.75 -2.39 -0.02 1.64 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.09 2.88 6.99 -2.39 -0.02 2.86 16 35 H 0.08 2.32 8.12 -2.39 -0.02 2.30 16 36 H 0.42 10.51 6.28 -92.71 -0.58 9.93 16 37 H 0.17 4.23 5.21 -4.51 -0.02 4.21 16 38 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 39 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.08 2.28 5.61 -2.39 -0.01 2.27 16 42 H 0.05 2.31 6.96 -2.39 -0.02 2.30 16 43 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 44 H 0.02 0.81 7.02 -2.39 -0.02 0.79 16 45 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 Total: -1.00 -61.04 357.42 4.04 -57.01 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.47 Total: 20.74 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 6.67 Total: 26.05 kcal Atomic # 7 Polarization: -132.00 SS G_CDS: -6.71 Total: -138.71 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 1.58 Total: -9.34 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -61.04 4.04 -57.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879471418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.253 kcal (2) G-P(sol) polarization free energy of solvation -61.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds