Wall clock time and date at job start Wed Apr 1 2020 03:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.74910 * 2 1 4 4 C 1.53815 * 109.75559 * 239.37561 * 2 1 3 5 5 N 1.46967 * 108.57967 * 289.94515 * 4 2 1 6 6 C 1.34777 * 120.59476 * 124.62766 * 5 4 2 7 7 O 1.21666 * 120.00210 * 176.09410 * 6 5 4 8 8 C 1.46919 * 119.99503 * 356.09701 * 6 5 4 9 9 C 1.36345 * 126.77474 * 49.57657 * 8 6 5 10 10 N 1.35505 * 109.75839 * 179.86361 * 9 8 6 11 11 H 0.96998 * 124.79273 * 180.17187 * 10 9 8 12 12 C 1.37954 * 110.42386 * 0.41128 * 10 9 8 13 13 C 1.39166 * 133.17093 * 179.77583 * 12 10 9 14 14 C 1.37761 * 119.97836 * 179.97438 * 13 12 10 15 15 C 1.38736 * 120.65432 * 0.02562 * 14 13 12 16 16 C 1.37979 * 120.27085 * 359.94694 * 15 14 13 17 17 F 1.35098 * 120.18664 * 180.02562 * 16 15 14 18 18 C 1.39461 * 119.62822 * 0.06670 * 16 15 14 19 19 C 1.46961 * 118.81267 * 304.65508 * 5 4 2 20 20 C 1.53368 * 108.63860 * 55.22180 * 19 5 4 21 21 H 1.08999 * 109.75198 * 70.40596 * 20 19 5 22 22 C 1.53006 * 109.61022 * 190.83345 * 20 19 5 23 23 N 1.46958 * 108.63569 * 310.57799 * 20 19 5 24 24 C 1.36941 * 120.59578 * 235.20218 * 23 20 19 25 25 H 1.08002 * 119.99980 * 123.76180 * 24 23 20 26 26 C 1.38809 * 119.99979 * 303.76600 * 24 23 20 27 27 N 1.31624 * 120.00037 * 162.51098 * 26 24 23 28 28 Si 1.86797 * 119.99814 * 342.51208 * 26 24 23 29 29 H 1.48500 * 109.47388 * 274.51237 * 28 26 24 30 30 H 1.48496 * 109.47511 * 34.51468 * 28 26 24 31 31 H 1.48506 * 109.47210 * 154.51323 * 28 26 24 32 32 H 1.08994 * 109.47190 * 299.57269 * 1 2 3 33 33 H 1.08997 * 109.46992 * 59.57181 * 1 2 3 34 34 H 1.08998 * 109.46909 * 179.56936 * 1 2 3 35 35 H 1.09006 * 109.73888 * 170.16553 * 4 2 1 36 36 H 1.08993 * 109.68069 * 49.69984 * 4 2 1 37 37 H 1.08005 * 125.11856 * 359.97438 * 9 8 6 38 38 H 1.08006 * 120.01221 * 359.95618 * 13 12 10 39 39 H 1.08005 * 119.67135 * 179.97438 * 14 13 12 40 40 H 1.08001 * 119.86612 * 180.02562 * 15 14 13 41 41 H 1.09005 * 109.61090 * 295.47460 * 19 5 4 42 42 H 1.09000 * 109.75229 * 175.05193 * 19 5 4 43 43 H 1.09006 * 109.46874 * 179.14492 * 22 20 19 44 44 H 1.09000 * 109.46883 * 299.14363 * 22 20 19 45 45 H 1.08995 * 109.47139 * 59.14702 * 22 20 19 46 46 H 0.96996 * 119.99757 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0500 -0.7374 -1.2457 5 7 1.7610 -2.1706 -1.0961 6 6 1.0602 -2.8312 -2.0390 7 8 0.8880 -4.0315 -1.9397 8 6 0.5043 -2.1017 -3.1868 9 6 1.1670 -1.2286 -3.9976 10 7 0.3248 -0.7574 -4.9488 11 1 0.5706 -0.1242 -5.6413 12 6 -0.9331 -1.3012 -4.7902 13 6 -2.1308 -1.1480 -5.4821 14 6 -3.2515 -1.8409 -5.0800 15 6 -3.2014 -2.6942 -3.9873 16 6 -2.0235 -2.8606 -3.2882 17 9 -1.9765 -3.6924 -2.2247 18 6 -0.8821 -2.1646 -3.6850 19 6 2.2493 -2.8705 0.1003 20 6 1.7342 -2.1343 1.3433 21 1 0.6587 -2.2825 1.4398 22 6 2.4406 -2.6733 2.5889 23 7 2.0232 -0.7012 1.1937 24 6 2.7344 -0.0299 2.1522 25 1 3.6357 0.5010 1.8831 26 6 2.2971 -0.0317 3.4696 27 7 3.1239 0.3015 4.4380 28 14 0.5351 -0.5071 3.8681 29 1 -0.3406 0.6853 3.7393 30 1 0.0806 -1.5592 2.9239 31 1 0.4645 -1.0253 5.2580 32 1 -0.3633 0.5071 0.8937 33 1 -0.3633 0.5205 -0.8861 34 1 -0.3633 -1.0276 -0.0077 35 1 3.1258 -0.5891 -1.3391 36 1 1.5493 -0.3542 -2.1348 37 1 2.2071 -0.9551 -3.8979 38 1 -2.1818 -0.4858 -6.3339 39 1 -4.1786 -1.7179 -5.6203 40 1 -4.0876 -3.2315 -3.6834 41 1 3.3394 -2.8740 0.1028 42 1 1.8803 -3.8961 0.1035 43 1 2.0839 -2.1382 3.4690 44 1 2.2247 -3.7362 2.6977 45 1 3.5163 -2.5295 2.4874 46 1 2.8184 0.2999 5.3586 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880456190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:26 Heat of formation + Delta-G solvation = 25.569838 kcal Electronic energy + Delta-G solvation = -31857.518966 eV Core-core repulsion = 27663.632151 eV Total energy + Delta-G solvation = -4193.886815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -48.68198 -41.66076 -39.50868 -37.36587 -37.02553 -34.27818 -32.66411 -32.10313 -31.52944 -29.82036 -29.19047 -28.31034 -26.34950 -25.89227 -23.65722 -23.18425 -22.38148 -22.00178 -21.33569 -19.37377 -18.84375 -18.07886 -17.06454 -16.76024 -16.25410 -16.11267 -15.68973 -15.48175 -15.30437 -15.08079 -14.97110 -14.76079 -14.52459 -14.27654 -13.49452 -13.44519 -13.25702 -13.07242 -12.83624 -12.55140 -12.29261 -12.22611 -11.89313 -11.70536 -11.67632 -11.52931 -11.46034 -11.21746 -10.94705 -10.73501 -10.45777 -10.09542 -10.02259 -9.95097 -9.80425 -9.52415 -9.34466 -8.66040 -8.54985 -8.15719 -7.83618 -6.44647 -6.05394 -3.70083 0.71234 1.21324 2.01117 2.69026 3.07940 3.36052 3.42746 3.45686 3.53016 3.63463 4.20438 4.37076 4.48372 4.60988 4.72254 4.80010 4.89104 4.95966 5.18971 5.20013 5.31840 5.43370 5.52721 5.59438 5.74595 5.83078 5.91914 5.98886 6.02742 6.08109 6.12079 6.13847 6.23934 6.26587 6.28887 6.32647 6.43805 6.52295 6.66488 6.71616 6.80708 6.83875 6.99912 7.08475 7.11310 7.33698 7.85225 8.08440 8.50403 8.57057 8.98402 9.63154 10.19354 11.06668 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.003719 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.706913 B = 7527.021801 C = 7686.797936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.152 3.848 3 H 0.082 0.918 4 C 0.088 3.912 5 N -0.591 5.591 6 C 0.581 3.419 7 O -0.542 6.542 8 C -0.193 4.193 9 C 0.095 3.905 10 N -0.578 5.578 11 H 0.422 0.578 12 C 0.118 3.882 13 C -0.140 4.140 14 C -0.073 4.073 15 C -0.183 4.183 16 C 0.156 3.844 17 F -0.124 7.124 18 C -0.108 4.108 19 C 0.104 3.896 20 C 0.149 3.851 21 H 0.041 0.959 22 C -0.134 4.134 23 N -0.593 5.593 24 C -0.280 4.280 25 H 0.070 0.930 26 C 0.061 3.939 27 N -0.896 5.896 28 Si 0.867 3.133 29 H -0.291 1.291 30 H -0.253 1.253 31 H -0.298 1.298 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.185 0.815 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.067 0.933 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.866 -0.628 -21.398 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.100 0.900 4 C -0.036 4.036 5 N -0.322 5.322 6 C 0.369 3.631 7 O -0.420 6.420 8 C -0.204 4.204 9 C -0.036 4.036 10 N -0.180 5.180 11 H 0.260 0.740 12 C 0.011 3.989 13 C -0.161 4.161 14 C -0.092 4.092 15 C -0.203 4.203 16 C 0.136 3.864 17 F -0.102 7.102 18 C -0.114 4.114 19 C -0.020 4.020 20 C 0.043 3.957 21 H 0.058 0.942 22 C -0.191 4.191 23 N -0.317 5.317 24 C -0.408 4.408 25 H 0.087 0.913 26 C -0.142 4.142 27 N -0.534 5.534 28 Si 0.696 3.304 29 H -0.219 1.219 30 H -0.178 1.178 31 H -0.226 1.226 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.201 0.799 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.086 0.914 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.812 -1.192 -21.144 22.573 hybrid contribution -0.845 0.122 0.358 0.926 sum -8.657 -1.070 -20.787 22.543 Atomic orbital electron populations 1.22193 0.98453 1.01006 1.00217 1.21161 0.91763 0.95856 0.86761 0.89980 1.22621 1.00416 0.80394 1.00201 1.47844 1.53489 1.10276 1.20615 1.17264 0.77961 0.86358 0.81529 1.90776 1.59604 1.14146 1.77471 1.19966 0.93284 1.05495 1.01617 1.22071 0.96376 0.95376 0.89734 1.41473 1.07659 1.40328 1.28541 0.73964 1.17919 0.86782 0.97183 0.97028 1.20031 0.90079 1.04186 1.01782 1.20599 0.97778 0.95120 0.95707 1.20930 0.96920 1.03861 0.98585 1.17117 0.92941 0.90456 0.85935 1.91575 1.96937 1.68630 1.53057 1.18687 0.92783 1.01513 0.98392 1.22266 0.98789 0.96469 0.84454 1.21193 0.97002 0.85187 0.92293 0.94169 1.21881 1.01911 0.97536 0.97809 1.44302 1.63202 1.02759 1.21466 1.18479 1.04615 1.30913 0.86824 0.91290 1.25929 0.96763 0.95080 0.96448 1.69851 1.34760 1.49051 0.99782 0.87324 0.86844 0.79174 0.77030 1.21865 1.17768 1.22558 0.92931 0.94027 0.93497 0.91343 0.90379 0.79852 0.85432 0.84628 0.84564 0.91475 0.90001 0.91704 0.94387 0.91402 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.14 37.16 0.34 -2.63 16 2 C 0.15 2.85 3.33 -67.25 -0.22 2.63 16 3 H 0.08 1.53 7.93 -51.93 -0.41 1.11 16 4 C 0.09 1.36 5.45 -3.36 -0.02 1.34 16 5 N -0.59 -10.42 2.59 -173.67 -0.45 -10.87 16 6 C 0.58 10.59 7.55 -12.75 -0.10 10.50 16 7 O -0.54 -11.73 16.10 5.22 0.08 -11.65 16 8 C -0.19 -2.87 5.33 -103.31 -0.55 -3.42 16 9 C 0.09 0.96 9.45 -16.61 -0.16 0.81 16 10 N -0.58 -4.67 5.99 -10.49 -0.06 -4.73 16 11 H 0.42 1.71 8.96 -40.82 -0.37 1.35 16 12 C 0.12 1.26 7.25 -83.98 -0.61 0.65 16 13 C -0.14 -1.19 10.07 -39.41 -0.40 -1.59 16 14 C -0.07 -0.63 10.01 -39.57 -0.40 -1.02 16 15 C -0.18 -2.05 10.01 -39.49 -0.40 -2.45 16 16 C 0.16 2.33 7.33 -39.22 -0.29 2.05 16 17 F -0.12 -2.23 16.81 2.25 0.04 -2.19 16 18 C -0.11 -1.57 6.34 -104.90 -0.67 -2.24 16 19 C 0.10 1.98 5.89 -3.60 -0.02 1.96 16 20 C 0.15 3.21 1.99 -67.49 -0.13 3.08 16 21 H 0.04 0.95 5.69 -51.93 -0.30 0.65 16 22 C -0.13 -2.90 7.70 37.16 0.29 -2.62 16 23 N -0.59 -13.28 1.87 -156.76 -0.29 -13.57 16 24 C -0.28 -7.32 8.79 -15.06 -0.13 -7.45 16 25 H 0.07 1.98 8.06 -52.49 -0.42 1.55 16 26 C 0.06 1.66 4.04 -17.43 -0.07 1.59 16 27 N -0.90 -26.12 13.97 55.49 0.78 -25.34 16 28 Si 0.87 21.82 25.08 -169.99 -4.26 17.56 16 29 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 30 H -0.25 -6.17 4.61 56.52 0.26 -5.91 16 31 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 32 H 0.05 1.06 7.99 -51.93 -0.41 0.64 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.94 7.01 -51.93 -0.36 0.58 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.99 4.45 -51.93 -0.23 0.76 16 37 H 0.18 1.32 7.49 -52.48 -0.39 0.93 16 38 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 39 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 42 H 0.08 1.60 7.02 -51.93 -0.36 1.23 16 43 H 0.06 1.56 3.10 -51.93 -0.16 1.40 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.51 7.91 -51.93 -0.41 1.09 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -34.34 361.55 -8.32 -42.66 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.07 Total: 1.50 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -3.53 Total: 1.19 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.03 Total: -54.52 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.26 Total: 17.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.34 -8.32 -42.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880456190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.230 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds