Wall clock time and date at job start Wed Apr 1 2020 03:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.74910 * 2 1 4 4 C 1.53815 * 109.75559 * 239.37561 * 2 1 3 5 5 N 1.46967 * 108.57967 * 289.94515 * 4 2 1 6 6 C 1.34777 * 120.59476 * 124.62766 * 5 4 2 7 7 O 1.21666 * 120.00210 * 176.09410 * 6 5 4 8 8 C 1.46919 * 119.99503 * 356.09701 * 6 5 4 9 9 C 1.36345 * 126.77474 * 49.57657 * 8 6 5 10 10 N 1.35505 * 109.75839 * 179.86361 * 9 8 6 11 11 H 0.96998 * 124.79273 * 180.17187 * 10 9 8 12 12 C 1.37954 * 110.42386 * 0.41128 * 10 9 8 13 13 C 1.39166 * 133.17093 * 179.77583 * 12 10 9 14 14 C 1.37761 * 119.97836 * 179.97438 * 13 12 10 15 15 C 1.38736 * 120.65432 * 0.02562 * 14 13 12 16 16 C 1.37979 * 120.27085 * 359.94694 * 15 14 13 17 17 F 1.35098 * 120.18664 * 180.02562 * 16 15 14 18 18 C 1.39461 * 119.62822 * 0.06670 * 16 15 14 19 19 C 1.46961 * 118.81267 * 304.65508 * 5 4 2 20 20 C 1.53368 * 108.63860 * 55.22180 * 19 5 4 21 21 H 1.08999 * 109.75198 * 70.40596 * 20 19 5 22 22 C 1.53006 * 109.61022 * 190.83345 * 20 19 5 23 23 N 1.46958 * 108.63569 * 310.57799 * 20 19 5 24 24 C 1.36941 * 120.59578 * 235.20218 * 23 20 19 25 25 H 1.08002 * 119.99980 * 123.76180 * 24 23 20 26 26 C 1.38809 * 119.99979 * 303.76600 * 24 23 20 27 27 N 1.31624 * 120.00037 * 162.51098 * 26 24 23 28 28 Si 1.86797 * 119.99814 * 342.51208 * 26 24 23 29 29 H 1.48500 * 109.47388 * 274.51237 * 28 26 24 30 30 H 1.48496 * 109.47511 * 34.51468 * 28 26 24 31 31 H 1.48506 * 109.47210 * 154.51323 * 28 26 24 32 32 H 1.08994 * 109.47190 * 299.57269 * 1 2 3 33 33 H 1.08997 * 109.46992 * 59.57181 * 1 2 3 34 34 H 1.08998 * 109.46909 * 179.56936 * 1 2 3 35 35 H 1.09006 * 109.73888 * 170.16553 * 4 2 1 36 36 H 1.08993 * 109.68069 * 49.69984 * 4 2 1 37 37 H 1.08005 * 125.11856 * 359.97438 * 9 8 6 38 38 H 1.08006 * 120.01221 * 359.95618 * 13 12 10 39 39 H 1.08005 * 119.67135 * 179.97438 * 14 13 12 40 40 H 1.08001 * 119.86612 * 180.02562 * 15 14 13 41 41 H 1.09005 * 109.61090 * 295.47460 * 19 5 4 42 42 H 1.09000 * 109.75229 * 175.05193 * 19 5 4 43 43 H 1.09006 * 109.46874 * 179.14492 * 22 20 19 44 44 H 1.09000 * 109.46883 * 299.14363 * 22 20 19 45 45 H 1.08995 * 109.47139 * 59.14702 * 22 20 19 46 46 H 0.96996 * 119.99757 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0500 -0.7374 -1.2457 5 7 1.7610 -2.1706 -1.0961 6 6 1.0602 -2.8312 -2.0390 7 8 0.8880 -4.0315 -1.9397 8 6 0.5043 -2.1017 -3.1868 9 6 1.1670 -1.2286 -3.9976 10 7 0.3248 -0.7574 -4.9488 11 1 0.5706 -0.1242 -5.6413 12 6 -0.9331 -1.3012 -4.7902 13 6 -2.1308 -1.1480 -5.4821 14 6 -3.2515 -1.8409 -5.0800 15 6 -3.2014 -2.6942 -3.9873 16 6 -2.0235 -2.8606 -3.2882 17 9 -1.9765 -3.6924 -2.2247 18 6 -0.8821 -2.1646 -3.6850 19 6 2.2493 -2.8705 0.1003 20 6 1.7342 -2.1343 1.3433 21 1 0.6587 -2.2825 1.4398 22 6 2.4406 -2.6733 2.5889 23 7 2.0232 -0.7012 1.1937 24 6 2.7344 -0.0299 2.1522 25 1 3.6357 0.5010 1.8831 26 6 2.2971 -0.0317 3.4696 27 7 3.1239 0.3015 4.4380 28 14 0.5351 -0.5071 3.8681 29 1 -0.3406 0.6853 3.7393 30 1 0.0806 -1.5592 2.9239 31 1 0.4645 -1.0253 5.2580 32 1 -0.3633 0.5071 0.8937 33 1 -0.3633 0.5205 -0.8861 34 1 -0.3633 -1.0276 -0.0077 35 1 3.1258 -0.5891 -1.3391 36 1 1.5493 -0.3542 -2.1348 37 1 2.2071 -0.9551 -3.8979 38 1 -2.1818 -0.4858 -6.3339 39 1 -4.1786 -1.7179 -5.6203 40 1 -4.0876 -3.2315 -3.6834 41 1 3.3394 -2.8740 0.1028 42 1 1.8803 -3.8961 0.1035 43 1 2.0839 -2.1382 3.4690 44 1 2.2247 -3.7362 2.6977 45 1 3.5163 -2.5295 2.4874 46 1 2.8184 0.2999 5.3586 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880456190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:24 Heat of formation + Delta-G solvation = 2.970551 kcal Electronic energy + Delta-G solvation = -31858.498944 eV Core-core repulsion = 27663.632151 eV Total energy + Delta-G solvation = -4194.866794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.79511 -42.51635 -40.90298 -38.93739 -37.82221 -35.92586 -34.22699 -33.76570 -32.75561 -30.61171 -30.32979 -29.89469 -27.82510 -27.36147 -25.42058 -24.00190 -23.26693 -23.19707 -22.92450 -20.79223 -20.17659 -19.31883 -18.39300 -17.98942 -17.56629 -17.18599 -16.99091 -16.68121 -16.55548 -16.38547 -16.27273 -16.17147 -15.68004 -15.28871 -15.22319 -14.94981 -14.75428 -14.29316 -14.16688 -14.00173 -13.81864 -13.62698 -13.39085 -13.10700 -12.89717 -12.63178 -12.58215 -12.50142 -12.45338 -12.35318 -12.30561 -11.94858 -11.79531 -11.69587 -11.32953 -10.98933 -10.63560 -10.54774 -9.73254 -9.43743 -8.71039 -8.33448 -8.17365 -5.81364 -0.11888 0.41914 1.04878 1.30009 1.37349 1.47574 1.79638 1.99296 2.29233 2.39140 2.71016 3.05054 3.28343 3.35884 3.59695 3.66592 3.95816 4.00239 4.04037 4.13453 4.26272 4.32706 4.33684 4.41050 4.46164 4.51405 4.59268 4.61966 4.68125 4.71495 4.76660 4.80827 4.95857 5.00652 5.08402 5.17861 5.20563 5.25686 5.30151 5.33964 5.37520 5.49014 5.50331 5.64241 5.98255 6.01051 6.35544 6.52243 6.55832 7.08187 7.22833 7.57877 8.19215 8.95237 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.003719 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.706913 B = 7527.021801 C = 7686.797936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.144 3.856 3 H 0.089 0.911 4 C 0.098 3.902 5 N -0.594 5.594 6 C 0.582 3.418 7 O -0.590 6.590 8 C -0.254 4.254 9 C 0.136 3.864 10 N -0.552 5.552 11 H 0.447 0.553 12 C 0.112 3.888 13 C -0.118 4.118 14 C -0.074 4.074 15 C -0.175 4.175 16 C 0.092 3.908 17 F -0.159 7.159 18 C -0.137 4.137 19 C 0.114 3.886 20 C 0.152 3.848 21 H 0.020 0.980 22 C -0.131 4.131 23 N -0.601 5.601 24 C -0.258 4.258 25 H 0.043 0.957 26 C 0.027 3.973 27 N -0.936 5.936 28 Si 0.911 3.089 29 H -0.298 1.298 30 H -0.248 1.248 31 H -0.304 1.304 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.024 0.976 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.221 0.779 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.146 0.854 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.685 1.270 -25.978 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.025 4.025 5 N -0.324 5.324 6 C 0.372 3.628 7 O -0.472 6.472 8 C -0.264 4.264 9 C 0.002 3.998 10 N -0.155 5.155 11 H 0.290 0.710 12 C 0.005 3.995 13 C -0.138 4.138 14 C -0.093 4.093 15 C -0.195 4.195 16 C 0.072 3.928 17 F -0.138 7.138 18 C -0.142 4.142 19 C -0.011 4.011 20 C 0.046 3.954 21 H 0.037 0.963 22 C -0.189 4.189 23 N -0.327 5.327 24 C -0.388 4.388 25 H 0.061 0.939 26 C -0.173 4.173 27 N -0.578 5.578 28 Si 0.741 3.259 29 H -0.226 1.226 30 H -0.172 1.172 31 H -0.232 1.232 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.237 0.763 38 H 0.190 0.810 39 H 0.193 0.807 40 H 0.163 0.837 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.656 0.746 -25.801 27.224 hybrid contribution -0.629 -0.432 1.609 1.781 sum -9.285 0.315 -24.191 25.914 Atomic orbital electron populations 1.22062 0.98170 0.99689 1.00726 1.21381 0.91913 0.96408 0.86560 0.89336 1.22649 1.01626 0.78641 0.99556 1.47903 1.53563 1.11033 1.19943 1.17797 0.76788 0.85968 0.82212 1.90731 1.61080 1.16503 1.78856 1.19759 0.94626 1.09158 1.02879 1.22469 0.97325 0.92199 0.87766 1.41439 1.06363 1.39565 1.28158 0.71018 1.18143 0.88348 0.96797 0.96198 1.20586 0.88606 1.02983 1.01615 1.21095 0.99657 0.93871 0.94678 1.21264 0.95940 1.03671 0.98608 1.17741 0.95189 0.92714 0.87125 1.91470 1.97228 1.70120 1.55003 1.19012 0.92581 1.02658 0.99964 1.21967 0.98977 0.95847 0.84286 1.21099 0.95748 0.85115 0.93474 0.96259 1.21831 1.01137 0.98979 0.96930 1.44399 1.63146 1.03187 1.21918 1.18316 1.03658 1.29393 0.87418 0.93904 1.26285 0.98629 0.95769 0.96577 1.69932 1.36034 1.51770 1.00042 0.86625 0.84152 0.78636 0.76528 1.22565 1.17249 1.23212 0.95090 0.90682 0.95720 0.89713 0.86841 0.76272 0.81037 0.80706 0.83662 0.90732 0.90905 0.94059 0.91829 0.92265 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 9.14 71.98 0.66 -4.67 16 2 C 0.14 5.18 3.33 45.18 0.15 5.33 16 3 H 0.09 3.10 7.93 -2.39 -0.02 3.08 16 4 C 0.10 2.78 5.45 86.57 0.47 3.25 16 5 N -0.59 -20.52 2.59 -821.58 -2.13 -22.65 16 6 C 0.58 21.27 7.55 86.52 0.65 21.92 16 7 O -0.59 -26.70 16.10 -4.24 -0.07 -26.77 16 8 C -0.25 -7.14 5.33 -19.02 -0.10 -7.24 16 9 C 0.14 2.16 9.45 83.68 0.79 2.95 16 10 N -0.55 -5.97 5.99 -187.09 -1.12 -7.09 16 11 H 0.45 0.67 8.96 -92.71 -0.83 -0.16 16 12 C 0.11 1.95 7.25 38.91 0.28 2.23 16 13 C -0.12 -1.38 10.07 22.38 0.23 -1.15 16 14 C -0.07 -0.97 10.01 22.28 0.22 -0.75 16 15 C -0.18 -3.72 10.01 22.33 0.22 -3.50 16 16 C 0.09 2.82 7.33 22.50 0.16 2.98 16 17 F -0.16 -6.24 16.81 44.97 0.76 -5.48 16 18 C -0.14 -3.82 6.34 -20.04 -0.13 -3.95 16 19 C 0.11 4.38 5.89 86.41 0.51 4.89 16 20 C 0.15 6.62 1.99 45.03 0.09 6.71 16 21 H 0.02 0.95 5.69 -2.39 -0.01 0.94 16 22 C -0.13 -5.79 7.70 71.98 0.55 -5.24 16 23 N -0.60 -26.92 1.87 -649.88 -1.21 -28.14 16 24 C -0.26 -13.69 8.79 84.03 0.74 -12.95 16 25 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 26 C 0.03 1.48 4.04 84.86 0.34 1.83 16 27 N -0.94 -56.04 13.97 21.65 0.30 -55.74 16 28 Si 0.91 46.37 25.08 68.60 1.72 48.09 16 29 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 30 H -0.25 -12.27 4.61 99.48 0.46 -11.82 16 31 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 32 H 0.03 1.22 7.99 -2.39 -0.02 1.20 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.02 0.98 7.01 -2.39 -0.02 0.97 16 35 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.11 2.39 4.45 -2.39 -0.01 2.38 16 37 H 0.22 1.83 7.49 -2.91 -0.02 1.81 16 38 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 39 H 0.18 0.91 8.06 -2.91 -0.02 0.88 16 40 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.07 2.74 8.12 -2.38 -0.02 2.72 16 42 H 0.07 2.94 7.02 -2.39 -0.02 2.92 16 43 H 0.04 2.02 3.10 -2.38 -0.01 2.01 16 44 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.06 2.67 7.91 -2.39 -0.02 2.65 16 46 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -82.47 361.55 4.05 -78.41 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -0.04 Total: 6.71 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 5.85 Total: 12.65 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -4.16 Total: -113.62 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.07 Total: -26.77 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.76 Total: -5.48 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.72 Total: 48.09 kcal Total: -82.47 4.05 -78.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880456190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.385 kcal (2) G-P(sol) polarization free energy of solvation -82.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds