Wall clock time and date at job start Wed Apr 1 2020 03:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.62660 * 2 1 4 4 C 1.53241 * 109.62313 * 239.62193 * 2 1 3 5 5 N 1.46962 * 109.30824 * 186.66065 * 4 2 1 6 6 C 1.40065 * 110.96635 * 187.06274 * 5 4 2 7 7 N 1.33765 * 125.75490 * 235.18628 * 6 5 4 8 8 C 1.32719 * 109.20095 * 179.82843 * 7 6 5 9 9 C 1.40840 * 132.19202 * 180.12467 * 8 7 6 10 10 C 1.36109 * 119.34073 * 180.33249 * 9 8 7 11 11 C 1.40396 * 119.67815 * 0.02562 * 10 9 8 12 12 C 1.35016 * 120.27222 * 0.02562 * 11 10 9 13 13 N 1.36404 * 120.61861 * 359.96273 * 12 11 10 14 14 C 1.35774 * 125.76374 * 55.49379 * 6 5 4 15 15 N 1.48597 * 126.45790 * 0.02562 * 14 6 5 16 16 O 1.21796 * 119.99686 * 269.99291 * 15 14 6 17 17 O 1.21794 * 120.00198 * 90.00220 * 15 14 6 18 18 C 1.46901 * 111.44102 * 62.80579 * 5 4 2 19 19 C 1.53240 * 109.34459 * 296.98213 * 18 5 4 20 20 H 1.08991 * 109.62785 * 173.54007 * 19 18 5 21 21 C 1.52996 * 109.78852 * 294.02694 * 19 18 5 22 22 N 1.47073 * 109.63365 * 120.39263 * 2 1 3 23 23 C 1.36937 * 120.87699 * 350.91478 * 22 2 1 24 24 H 1.08004 * 120.00446 * 26.23306 * 23 22 2 25 25 C 1.38812 * 120.00123 * 206.23253 * 23 22 2 26 26 N 1.31620 * 119.99696 * 17.42092 * 25 23 22 27 27 Si 1.86804 * 120.00350 * 197.42878 * 25 23 22 28 28 H 1.48500 * 109.46682 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47411 * 119.99817 * 27 25 23 30 30 H 1.48501 * 109.46952 * 239.99837 * 27 25 23 31 31 H 1.09001 * 109.46857 * 299.99367 * 1 2 3 32 32 H 1.08992 * 109.47073 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47307 * 59.99221 * 1 2 3 34 34 H 1.08997 * 109.49071 * 306.41599 * 4 2 1 35 35 H 1.09001 * 109.49508 * 66.50103 * 4 2 1 36 36 H 1.08005 * 120.32829 * 0.32058 * 9 8 7 37 37 H 1.08004 * 120.15994 * 180.02562 * 10 9 8 38 38 H 1.08008 * 119.86277 * 179.97438 * 11 10 9 39 39 H 1.08006 * 119.69349 * 180.02562 * 12 11 10 40 40 H 1.09003 * 109.49003 * 177.02356 * 18 5 4 41 41 H 1.09001 * 109.48974 * 56.94294 * 18 5 4 42 42 H 1.08995 * 109.47614 * 179.12295 * 21 19 18 43 43 H 1.08998 * 109.47144 * 299.12694 * 21 19 18 44 44 H 1.09003 * 109.47241 * 59.12380 * 21 19 18 45 45 H 0.97010 * 119.99908 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0447 -0.7299 -1.2452 5 7 3.5054 -0.8662 -1.1596 6 6 4.0310 -1.3847 -2.3499 7 7 4.7991 -2.4747 -2.4557 8 6 5.1080 -2.6688 -3.7318 9 6 5.8762 -3.6557 -4.3795 10 6 6.0318 -3.5997 -5.7305 11 6 5.4268 -2.5621 -6.4575 12 6 4.6942 -1.6229 -5.8218 13 7 4.5305 -1.6679 -4.4683 14 6 3.8518 -0.8624 -3.5903 15 7 3.0693 0.3538 -3.9317 16 8 1.8839 0.2610 -4.1956 17 8 3.6133 1.4434 -3.9477 18 6 3.9016 -1.6870 -0.0075 19 6 3.4630 -0.9919 1.2858 20 1 3.6510 -1.6476 2.1358 21 6 4.2413 0.3135 1.4618 22 7 2.0242 -0.7008 1.1949 23 6 1.1673 -1.0729 2.1961 24 1 0.1254 -1.2534 1.9759 25 6 1.6376 -1.2181 3.4940 26 7 2.7892 -0.6832 3.8403 27 14 0.6362 -2.1728 4.7491 28 1 -0.6106 -2.6693 4.1132 29 1 1.4319 -3.3243 5.2449 30 1 0.2908 -1.2833 5.8869 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5140 -0.8899 34 1 1.5922 -1.7201 -1.2993 35 1 1.7809 -0.1599 -2.1361 36 1 6.3375 -4.4489 -3.8098 37 1 6.6178 -4.3499 -6.2408 38 1 5.5486 -2.5146 -7.5296 39 1 4.2326 -0.8291 -6.3903 40 1 4.9845 -1.8111 -0.0046 41 1 3.4233 -2.6641 -0.0755 42 1 3.9144 0.8113 2.3747 43 1 5.3070 0.0949 1.5287 44 1 4.0570 0.9645 0.6071 45 1 3.1181 -0.7850 4.7472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882519060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:10 Heat of formation + Delta-G solvation = 146.884698 kcal Electronic energy + Delta-G solvation = -31752.477465 eV Core-core repulsion = 27583.771218 eV Total energy + Delta-G solvation = -4168.706246 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -43.54741 -41.88280 -39.22195 -37.59461 -36.59429 -34.86125 -34.10748 -32.69003 -31.52169 -30.23879 -29.90016 -27.84571 -26.39578 -26.23909 -25.13774 -23.78581 -23.17828 -22.88968 -21.32821 -20.69845 -19.76528 -18.93227 -18.70866 -17.84769 -17.32378 -16.82806 -16.57353 -16.39518 -15.99861 -15.44158 -15.07671 -14.83653 -14.45447 -14.08749 -13.73606 -13.39285 -13.09848 -12.85443 -12.56733 -12.36057 -11.95992 -11.81656 -11.68126 -11.58751 -11.52338 -11.48026 -11.18463 -11.07564 -10.93868 -10.78500 -10.60315 -10.54249 -10.52214 -10.10142 -10.05374 -9.89095 -9.47898 -9.35441 -8.61101 -8.49507 -8.09010 -6.71829 -5.78860 -3.20531 0.20246 0.31702 0.50769 0.87678 2.13441 2.21145 2.97061 3.36748 3.42498 3.45869 3.47274 3.69866 4.12183 4.21199 4.38823 4.47291 4.53102 4.87573 5.05046 5.16171 5.31930 5.38044 5.41826 5.56473 5.60279 5.66544 5.76015 5.89837 5.94027 6.04969 6.14284 6.21787 6.25951 6.32981 6.41637 6.54461 6.68652 6.85904 6.90840 7.01073 7.08834 7.14146 7.21545 7.39931 7.52512 7.65226 7.77055 7.91214 8.40985 9.20007 9.81463 10.38655 11.29048 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.003482 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.093222 B = 8040.227753 C = 8826.189720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.174 3.826 3 H 0.038 0.962 4 C 0.041 3.959 5 N -0.446 5.446 6 C 0.354 3.646 7 N -0.499 5.499 8 C 0.290 3.710 9 C -0.087 4.087 10 C -0.079 4.079 11 C -0.138 4.138 12 C 0.061 3.939 13 N -0.337 5.337 14 C -0.078 4.078 15 N 0.060 4.940 16 O -0.131 6.131 17 O -0.111 6.111 18 C 0.050 3.950 19 C 0.195 3.805 20 H 0.105 0.895 21 C -0.138 4.138 22 N -0.584 5.584 23 C -0.251 4.251 24 H 0.074 0.926 25 C 0.003 3.997 26 N -0.897 5.897 27 Si 0.900 3.100 28 H -0.279 1.279 29 H -0.290 1.290 30 H -0.291 1.291 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.164 0.836 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.078 0.922 43 H 0.024 0.976 44 H 0.030 0.970 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.576 -5.068 -21.066 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.066 3.934 3 H 0.056 0.944 4 C -0.086 4.086 5 N -0.163 5.163 6 C 0.121 3.879 7 N -0.226 5.226 8 C 0.047 3.953 9 C -0.107 4.107 10 C -0.103 4.103 11 C -0.159 4.159 12 C -0.063 4.063 13 N -0.014 5.014 14 C -0.270 4.270 15 N 0.594 4.406 16 O -0.351 6.351 17 O -0.339 6.339 18 C -0.077 4.077 19 C 0.088 3.912 20 H 0.123 0.877 21 C -0.197 4.197 22 N -0.307 5.307 23 C -0.380 4.380 24 H 0.092 0.908 25 C -0.195 4.195 26 N -0.542 5.542 27 Si 0.730 3.270 28 H -0.204 1.204 29 H -0.217 1.217 30 H -0.218 1.218 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.182 0.818 37 H 0.170 0.830 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.043 0.957 44 H 0.049 0.951 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.308 -5.609 -19.863 21.896 hybrid contribution -0.993 -0.218 -0.302 1.060 sum 6.315 -5.827 -20.166 21.920 Atomic orbital electron populations 1.21792 0.95061 1.01675 1.00997 1.20442 0.93094 0.94150 0.85699 0.94426 1.23193 0.82321 1.01255 1.01810 1.59433 1.12602 1.45417 0.98862 1.19306 0.92861 0.87544 0.88198 1.71188 1.21231 1.16151 1.14036 1.20917 0.97470 0.90348 0.86594 1.20417 0.98333 0.97516 0.94458 1.21207 0.97950 0.97958 0.93179 1.20871 0.98858 0.94604 1.01598 1.21761 1.01670 1.02260 0.80613 1.42068 1.33179 1.19465 1.06699 1.20305 1.18599 0.97753 0.90335 1.42247 1.00311 1.00464 0.97608 1.94549 0.98275 1.93022 1.49228 1.94578 1.73473 1.12880 1.52932 1.23016 1.00464 0.94514 0.89703 1.20537 0.82965 0.95588 0.92114 0.87690 1.21995 0.96885 0.99147 1.01674 1.44343 1.03510 1.65034 1.17837 1.19242 0.92861 1.39510 0.86429 0.90847 1.25005 0.97652 1.00133 0.96717 1.70020 1.21077 1.44989 1.18090 0.86259 0.79543 0.79682 0.81494 1.20387 1.21670 1.21816 0.91254 0.92699 0.93722 0.93244 0.91206 0.81848 0.83002 0.82284 0.82091 0.90482 0.93574 0.90303 0.95703 0.95134 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 7.93 37.16 0.29 -2.34 16 2 C 0.17 3.75 3.25 -67.49 -0.22 3.53 16 3 H 0.04 0.87 7.64 -51.93 -0.40 0.48 16 4 C 0.04 0.82 4.78 -3.67 -0.02 0.80 16 5 N -0.45 -8.95 4.22 -173.15 -0.73 -9.68 16 6 C 0.35 6.53 6.43 -154.01 -0.99 5.54 16 7 N -0.50 -8.53 10.31 -11.81 -0.12 -8.65 16 8 C 0.29 3.93 7.80 -155.98 -1.22 2.71 16 9 C -0.09 -0.75 10.11 -39.36 -0.40 -1.15 16 10 C -0.08 -0.44 10.07 -39.53 -0.40 -0.84 16 11 C -0.14 -0.80 9.99 -39.91 -0.40 -1.20 16 12 C 0.06 0.56 10.94 -16.66 -0.18 0.38 16 13 N -0.34 -4.56 2.95 -58.94 -0.17 -4.73 16 14 C -0.08 -1.31 7.39 -141.86 -1.05 -2.36 16 15 N 0.06 1.02 3.63 33.47 0.12 1.14 16 16 O -0.13 -2.20 17.37 -29.46 -0.51 -2.72 16 17 O -0.11 -1.92 19.26 -29.46 -0.57 -2.49 16 18 C 0.05 1.05 4.46 -3.70 -0.02 1.03 16 19 C 0.19 4.60 2.34 -67.49 -0.16 4.44 16 20 H 0.11 2.77 6.10 -51.93 -0.32 2.45 16 21 C -0.14 -3.20 8.97 37.16 0.33 -2.87 16 22 N -0.58 -14.30 2.73 -157.01 -0.43 -14.73 16 23 C -0.25 -6.61 8.73 -15.06 -0.13 -6.74 16 24 H 0.07 1.89 6.16 -52.48 -0.32 1.57 16 25 C 0.00 0.09 4.93 -17.43 -0.09 0.01 16 26 N -0.90 -24.85 9.78 55.49 0.54 -24.31 16 27 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 30 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 31 H 0.07 1.40 7.54 -51.93 -0.39 1.00 16 32 H 0.05 1.05 7.58 -51.93 -0.39 0.66 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.33 4.71 -51.93 -0.24 1.09 16 36 H 0.16 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.15 0.30 8.06 -52.48 -0.42 -0.12 16 38 H 0.16 0.35 8.06 -52.48 -0.42 -0.07 16 39 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.08 1.56 7.86 -51.93 -0.41 1.15 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 2.04 6.89 -51.93 -0.36 1.68 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.03 0.69 7.11 -51.93 -0.37 0.33 16 45 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -31.19 363.99 -11.77 -42.96 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.72 Total: 0.50 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -4.63 Total: 0.94 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.79 Total: -60.96 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -1.08 Total: -5.21 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.19 -11.77 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.846 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds