Wall clock time and date at job start Wed Apr 1 2020 03:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.62660 * 2 1 4 4 C 1.53241 * 109.62313 * 239.62193 * 2 1 3 5 5 N 1.46962 * 109.30824 * 186.66065 * 4 2 1 6 6 C 1.40065 * 110.96635 * 187.06274 * 5 4 2 7 7 N 1.33765 * 125.75490 * 235.18628 * 6 5 4 8 8 C 1.32719 * 109.20095 * 179.82843 * 7 6 5 9 9 C 1.40840 * 132.19202 * 180.12467 * 8 7 6 10 10 C 1.36109 * 119.34073 * 180.33249 * 9 8 7 11 11 C 1.40396 * 119.67815 * 0.02562 * 10 9 8 12 12 C 1.35016 * 120.27222 * 0.02562 * 11 10 9 13 13 N 1.36404 * 120.61861 * 359.96273 * 12 11 10 14 14 C 1.35774 * 125.76374 * 55.49379 * 6 5 4 15 15 N 1.48597 * 126.45790 * 0.02562 * 14 6 5 16 16 O 1.21796 * 119.99686 * 269.99291 * 15 14 6 17 17 O 1.21794 * 120.00198 * 90.00220 * 15 14 6 18 18 C 1.46901 * 111.44102 * 62.80579 * 5 4 2 19 19 C 1.53240 * 109.34459 * 296.98213 * 18 5 4 20 20 H 1.08991 * 109.62785 * 173.54007 * 19 18 5 21 21 C 1.52996 * 109.78852 * 294.02694 * 19 18 5 22 22 N 1.47073 * 109.63365 * 120.39263 * 2 1 3 23 23 C 1.36937 * 120.87699 * 350.91478 * 22 2 1 24 24 H 1.08004 * 120.00446 * 26.23306 * 23 22 2 25 25 C 1.38812 * 120.00123 * 206.23253 * 23 22 2 26 26 N 1.31620 * 119.99696 * 17.42092 * 25 23 22 27 27 Si 1.86804 * 120.00350 * 197.42878 * 25 23 22 28 28 H 1.48500 * 109.46682 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47411 * 119.99817 * 27 25 23 30 30 H 1.48501 * 109.46952 * 239.99837 * 27 25 23 31 31 H 1.09001 * 109.46857 * 299.99367 * 1 2 3 32 32 H 1.08992 * 109.47073 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47307 * 59.99221 * 1 2 3 34 34 H 1.08997 * 109.49071 * 306.41599 * 4 2 1 35 35 H 1.09001 * 109.49508 * 66.50103 * 4 2 1 36 36 H 1.08005 * 120.32829 * 0.32058 * 9 8 7 37 37 H 1.08004 * 120.15994 * 180.02562 * 10 9 8 38 38 H 1.08008 * 119.86277 * 179.97438 * 11 10 9 39 39 H 1.08006 * 119.69349 * 180.02562 * 12 11 10 40 40 H 1.09003 * 109.49003 * 177.02356 * 18 5 4 41 41 H 1.09001 * 109.48974 * 56.94294 * 18 5 4 42 42 H 1.08995 * 109.47614 * 179.12295 * 21 19 18 43 43 H 1.08998 * 109.47144 * 299.12694 * 21 19 18 44 44 H 1.09003 * 109.47241 * 59.12380 * 21 19 18 45 45 H 0.97010 * 119.99908 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0447 -0.7299 -1.2452 5 7 3.5054 -0.8662 -1.1596 6 6 4.0310 -1.3847 -2.3499 7 7 4.7991 -2.4747 -2.4557 8 6 5.1080 -2.6688 -3.7318 9 6 5.8762 -3.6557 -4.3795 10 6 6.0318 -3.5997 -5.7305 11 6 5.4268 -2.5621 -6.4575 12 6 4.6942 -1.6229 -5.8218 13 7 4.5305 -1.6679 -4.4683 14 6 3.8518 -0.8624 -3.5903 15 7 3.0693 0.3538 -3.9317 16 8 1.8839 0.2610 -4.1956 17 8 3.6133 1.4434 -3.9477 18 6 3.9016 -1.6870 -0.0075 19 6 3.4630 -0.9919 1.2858 20 1 3.6510 -1.6476 2.1358 21 6 4.2413 0.3135 1.4618 22 7 2.0242 -0.7008 1.1949 23 6 1.1673 -1.0729 2.1961 24 1 0.1254 -1.2534 1.9759 25 6 1.6376 -1.2181 3.4940 26 7 2.7892 -0.6832 3.8403 27 14 0.6362 -2.1728 4.7491 28 1 -0.6106 -2.6693 4.1132 29 1 1.4319 -3.3243 5.2449 30 1 0.2908 -1.2833 5.8869 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5140 -0.8899 34 1 1.5922 -1.7201 -1.2993 35 1 1.7809 -0.1599 -2.1361 36 1 6.3375 -4.4489 -3.8098 37 1 6.6178 -4.3499 -6.2408 38 1 5.5486 -2.5146 -7.5296 39 1 4.2326 -0.8291 -6.3903 40 1 4.9845 -1.8111 -0.0046 41 1 3.4233 -2.6641 -0.0755 42 1 3.9144 0.8113 2.3747 43 1 5.3070 0.0949 1.5287 44 1 4.0570 0.9645 0.6071 45 1 3.1181 -0.7850 4.7472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882519060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:07 Heat of formation + Delta-G solvation = 130.945625 kcal Electronic energy + Delta-G solvation = -31753.168635 eV Core-core repulsion = 27583.771218 eV Total energy + Delta-G solvation = -4169.397417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.93 seconds Orbital eigenvalues (eV) -44.58083 -43.13808 -40.69411 -38.70004 -37.90917 -36.34197 -35.09794 -34.43539 -33.33924 -31.20213 -31.05770 -29.69652 -27.93508 -27.49200 -26.67013 -25.36847 -24.21870 -24.05114 -22.74527 -22.24928 -20.83671 -20.58543 -20.20873 -19.02435 -18.50929 -18.05324 -17.76357 -17.48589 -17.36026 -16.82208 -16.13379 -16.10753 -15.84007 -15.80130 -15.45182 -15.25710 -14.67727 -13.83431 -13.53901 -13.46704 -13.42955 -13.29299 -13.18058 -13.04000 -12.87928 -12.83553 -12.63383 -12.59713 -12.47482 -12.42137 -12.32513 -12.29409 -11.98451 -11.88726 -11.70958 -11.49483 -11.24454 -11.00521 -10.49405 -9.47667 -9.45876 -8.69468 -7.82506 -5.26346 -0.95788 -0.49102 -0.38136 -0.33057 1.07310 1.23616 1.47375 1.50410 1.59334 2.16343 2.26723 2.52135 2.77497 3.24170 3.31738 3.36223 3.40204 3.69429 3.82095 3.93663 3.99121 4.01952 4.21658 4.23874 4.38573 4.41600 4.53978 4.57655 4.61570 4.62082 4.78834 4.86512 4.89790 4.93825 5.01742 5.04591 5.16044 5.25237 5.28215 5.31810 5.43236 5.57216 5.66332 5.73259 5.76854 5.92913 6.21174 6.25152 6.40637 7.17343 7.83902 8.39129 9.23951 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.003482 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.093222 B = 8040.227753 C = 8826.189720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.169 3.831 3 H 0.020 0.980 4 C 0.057 3.943 5 N -0.459 5.459 6 C 0.329 3.671 7 N -0.538 5.538 8 C 0.281 3.719 9 C -0.106 4.106 10 C -0.042 4.042 11 C -0.104 4.104 12 C 0.025 3.975 13 N -0.338 5.338 14 C -0.098 4.098 15 N 0.065 4.935 16 O -0.130 6.130 17 O -0.131 6.131 18 C 0.073 3.927 19 C 0.196 3.804 20 H 0.075 0.925 21 C -0.120 4.120 22 N -0.597 5.597 23 C -0.257 4.257 24 H 0.077 0.923 25 C -0.045 4.045 26 N -0.922 5.922 27 Si 0.961 3.039 28 H -0.270 1.270 29 H -0.293 1.293 30 H -0.295 1.295 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.183 0.817 37 H 0.205 0.795 38 H 0.210 0.790 39 H 0.172 0.828 40 H 0.080 0.920 41 H 0.032 0.968 42 H 0.049 0.951 43 H 0.037 0.963 44 H 0.027 0.973 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.563 -7.080 -25.051 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.062 3.938 3 H 0.038 0.962 4 C -0.070 4.070 5 N -0.177 5.177 6 C 0.095 3.905 7 N -0.265 5.265 8 C 0.039 3.961 9 C -0.126 4.126 10 C -0.066 4.066 11 C -0.124 4.124 12 C -0.098 4.098 13 N -0.014 5.014 14 C -0.289 4.289 15 N 0.597 4.403 16 O -0.351 6.351 17 O -0.355 6.355 18 C -0.055 4.055 19 C 0.089 3.911 20 H 0.093 0.907 21 C -0.179 4.179 22 N -0.321 5.321 23 C -0.387 4.387 24 H 0.095 0.905 25 C -0.241 4.241 26 N -0.568 5.568 27 Si 0.791 3.209 28 H -0.194 1.194 29 H -0.220 1.220 30 H -0.222 1.222 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.200 0.800 37 H 0.222 0.778 38 H 0.227 0.773 39 H 0.189 0.811 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.321 -7.605 -23.917 26.440 hybrid contribution -1.161 0.274 0.588 1.330 sum 7.160 -7.331 -23.330 25.481 Atomic orbital electron populations 1.21704 0.93232 1.01815 1.01825 1.20563 0.94668 0.93129 0.85402 0.96185 1.22928 0.82869 1.00378 1.00861 1.59335 1.12447 1.46291 0.99579 1.19158 0.94375 0.89013 0.87919 1.71063 1.22392 1.16421 1.16624 1.21624 0.97586 0.91096 0.85820 1.20914 0.98488 0.97123 0.96085 1.21917 0.95344 0.97659 0.91709 1.21636 0.94877 0.92077 1.03766 1.22446 1.03787 1.04497 0.79025 1.42183 1.32627 1.18636 1.07935 1.20147 1.19951 0.98010 0.90835 1.42297 1.00259 1.00633 0.97139 1.94518 0.98562 1.93109 1.48960 1.94566 1.73553 1.13459 1.53880 1.22574 1.00256 0.93477 0.89158 1.20380 0.83035 0.95163 0.92517 0.90694 1.21768 0.97545 0.98721 0.99830 1.44527 1.03674 1.65531 1.18333 1.19518 0.93291 1.38907 0.86962 0.90535 1.25678 0.98809 1.01234 0.98353 1.70175 1.22430 1.46146 1.18005 0.85301 0.78462 0.78060 0.79123 1.19430 1.22028 1.22248 0.92477 0.92807 0.90787 0.94191 0.90421 0.79961 0.77782 0.77336 0.81067 0.90154 0.94928 0.93239 0.94380 0.95390 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 7.93 71.98 0.57 -4.39 16 2 C 0.17 7.55 3.25 44.96 0.15 7.69 16 3 H 0.02 0.98 7.64 -2.38 -0.02 0.96 16 4 C 0.06 2.34 4.78 86.37 0.41 2.75 16 5 N -0.46 -19.15 4.22 -701.73 -2.96 -22.12 16 6 C 0.33 12.48 6.43 131.50 0.85 13.33 16 7 N -0.54 -18.66 10.31 -191.27 -1.97 -20.63 16 8 C 0.28 7.24 7.80 134.05 1.05 8.29 16 9 C -0.11 -1.43 10.11 22.41 0.23 -1.21 16 10 C -0.04 -0.20 10.07 22.30 0.22 0.03 16 11 C -0.10 -0.56 9.99 22.05 0.22 -0.34 16 12 C 0.03 0.38 10.94 83.24 0.91 1.29 16 13 N -0.34 -8.69 2.95 -340.40 -1.00 -9.69 16 14 C -0.10 -3.30 7.39 127.25 0.94 -2.36 16 15 N 0.06 2.22 3.63 -48.01 -0.17 2.04 16 16 O -0.13 -4.36 17.37 18.89 0.33 -4.03 16 17 O -0.13 -4.62 19.26 18.89 0.36 -4.26 16 18 C 0.07 3.20 4.46 86.38 0.39 3.59 16 19 C 0.20 9.72 2.34 44.96 0.11 9.83 16 20 H 0.08 4.17 6.10 -2.39 -0.01 4.16 16 21 C -0.12 -5.83 8.97 71.98 0.65 -5.18 16 22 N -0.60 -30.43 2.73 -650.67 -1.78 -32.21 16 23 C -0.26 -13.91 8.73 84.03 0.73 -13.18 16 24 H 0.08 4.02 6.16 -2.91 -0.02 4.00 16 25 C -0.04 -2.47 4.93 84.86 0.42 -2.05 16 26 N -0.92 -53.14 9.78 21.65 0.21 -52.92 16 27 Si 0.96 44.93 29.59 68.60 2.03 46.96 16 28 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 29 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 30 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 31 H 0.06 2.33 7.54 -2.39 -0.02 2.31 16 32 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 3.03 4.71 -2.39 -0.01 3.02 16 36 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.21 -0.99 8.06 -2.91 -0.02 -1.02 16 38 H 0.21 -0.82 8.06 -2.91 -0.02 -0.84 16 39 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.08 3.41 7.86 -2.39 -0.02 3.39 16 41 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 2.68 6.89 -2.39 -0.02 2.67 16 43 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.03 1.33 7.11 -2.39 -0.02 1.31 16 45 H 0.25 13.95 8.31 -92.70 -0.77 13.18 16 Total: -1.00 -74.11 363.99 3.90 -70.21 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.03 Total: 8.57 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 7.83 Total: 18.08 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -7.68 Total: -135.53 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.69 Total: -8.29 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -74.11 3.90 -70.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.152 kcal (2) G-P(sol) polarization free energy of solvation -74.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.94 seconds