Wall clock time and date at job start Wed Apr 1 2020 02:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.88521 * 2 1 4 4 C 1.54912 * 111.00554 * 236.11842 * 2 1 3 5 5 N 1.47465 * 104.81151 * 204.95106 * 4 2 1 6 6 C 1.34770 * 125.62846 * 204.14554 * 5 4 2 7 7 O 1.21532 * 120.00134 * 354.67726 * 6 5 4 8 8 C 1.48000 * 120.00135 * 174.67937 * 6 5 4 9 9 C 1.39657 * 119.95250 * 7.71117 * 8 6 5 10 10 C 1.37660 * 120.04575 * 179.76656 * 9 8 6 11 11 C 1.40038 * 119.95142 * 0.52961 * 10 9 8 12 12 N 1.36247 * 120.04542 * 179.74319 * 11 10 9 13 13 N 1.28999 * 119.99954 * 359.97438 * 12 11 10 14 14 C 1.34779 * 119.99899 * 179.97438 * 13 12 11 15 15 N 1.34778 * 120.00035 * 179.97438 * 14 13 12 16 16 O 1.21564 * 120.00080 * 0.02562 * 14 13 12 17 17 C 1.40038 * 119.90935 * 359.72176 * 11 10 9 18 18 C 1.37661 * 119.95547 * 0.02562 * 17 11 10 19 19 C 1.47027 * 108.72441 * 24.06712 * 5 4 2 20 20 C 1.54329 * 107.26854 * 358.97774 * 19 5 4 21 21 H 1.08993 * 110.72072 * 96.16822 * 20 19 5 22 22 N 1.46502 * 110.71630 * 219.44562 * 20 19 5 23 23 C 1.36947 * 119.99576 * 268.51853 * 22 20 19 24 24 H 1.07998 * 120.00091 * 0.02562 * 23 22 20 25 25 C 1.38809 * 119.99580 * 180.02562 * 23 22 20 26 26 N 1.31619 * 120.00427 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 119.99649 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.46960 * 89.99871 * 27 25 23 29 29 H 1.48497 * 109.46931 * 210.00059 * 27 25 23 30 30 H 1.48498 * 109.46939 * 329.99870 * 27 25 23 31 31 H 1.09006 * 109.47383 * 299.30067 * 1 2 3 32 32 H 1.09008 * 109.47303 * 59.29854 * 1 2 3 33 33 H 1.08994 * 109.47348 * 179.30106 * 1 2 3 34 34 H 1.08995 * 110.36197 * 323.75482 * 4 2 1 35 35 H 1.08998 * 110.36384 * 86.07681 * 4 2 1 36 36 H 1.07999 * 119.97343 * 359.97438 * 9 8 6 37 37 H 1.07994 * 120.02271 * 180.25363 * 10 9 8 38 38 H 0.97001 * 119.99726 * 0.02562 * 15 14 13 39 39 H 0.97002 * 120.00110 * 179.97438 * 15 14 13 40 40 H 1.08002 * 120.02344 * 180.02562 * 17 11 10 41 41 H 1.08001 * 119.98192 * 179.97438 * 18 17 11 42 42 H 1.09001 * 109.88457 * 239.56319 * 19 5 4 43 43 H 1.09001 * 110.01050 * 118.46180 * 19 5 4 44 44 H 0.96989 * 120.00710 * 88.52236 * 22 20 19 45 45 H 0.96995 * 120.00105 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4271 -1.2434 -0.7728 6 6 4.4480 -1.5608 -1.5933 7 8 4.2743 -1.5915 -2.7958 8 6 5.7808 -1.8720 -1.0301 9 6 5.9425 -1.9949 0.3516 10 6 7.1803 -2.2891 0.8773 11 6 8.2801 -2.4541 0.0262 12 7 9.5071 -2.7401 0.5447 13 7 9.6565 -2.8586 1.8205 14 6 10.8702 -3.1420 2.3335 15 7 11.0265 -3.2653 3.6665 16 8 11.8243 -3.2856 1.5938 17 6 8.1168 -2.3253 -1.3587 18 6 6.8762 -2.0362 -1.8806 19 6 3.4674 -1.2738 0.6966 20 6 2.0861 -0.8074 1.2026 21 1 1.4467 -1.6625 1.4216 22 7 2.2286 0.0506 2.3814 23 6 2.1999 -0.4988 3.6356 24 1 2.0726 -1.5645 3.7555 25 6 2.3344 0.3143 4.7526 26 7 2.4901 1.6130 4.6064 27 14 2.2960 -0.4352 6.4633 28 1 3.6748 -0.8040 6.8732 29 1 1.7414 0.5522 7.4238 30 1 1.4412 -1.6494 6.4526 31 1 -0.3634 0.5029 0.8962 32 1 -0.3634 0.5247 -0.8837 33 1 -0.3634 -1.0275 -0.0125 34 1 1.4519 -1.6698 -1.4030 35 1 2.1560 -0.1712 -2.0837 36 1 5.0951 -1.8624 1.0079 37 1 7.3041 -2.3881 1.9455 38 1 10.2653 -3.1503 4.2566 39 1 11.8999 -3.4696 4.0356 40 1 8.9637 -2.4526 -2.0168 41 1 6.7499 -1.9363 -2.9486 42 1 4.2426 -0.5992 1.0602 43 1 3.6661 -2.2880 1.0433 44 1 2.3433 1.0077 2.2738 45 1 2.5845 2.1810 5.3870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939833108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:11 Heat of formation + Delta-G solvation = 66.301672 kcal Electronic energy + Delta-G solvation = -29374.012746 eV Core-core repulsion = 25201.812157 eV Total energy + Delta-G solvation = -4172.200589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.47 seconds Orbital eigenvalues (eV) -40.80035 -40.26968 -39.07371 -37.74360 -36.51615 -34.28898 -34.05045 -33.07169 -31.68183 -31.34786 -30.77192 -28.07657 -27.79662 -26.14340 -24.40316 -23.35683 -22.91662 -21.60910 -20.37549 -20.16140 -19.94524 -18.48017 -17.43656 -17.33513 -17.21740 -16.43980 -16.16263 -15.91092 -15.81531 -15.15688 -14.89414 -14.70618 -14.36437 -14.16966 -13.80625 -13.76984 -13.67636 -13.46361 -13.13593 -13.01095 -12.66505 -12.50732 -12.08511 -11.84276 -11.73236 -11.55758 -11.23946 -11.14339 -11.00164 -10.72671 -10.57093 -10.36140 -10.12927 -10.08717 -10.03744 -9.83506 -9.34835 -9.34667 -9.08385 -9.05889 -8.54149 -7.22269 -5.96487 -3.28445 -0.83801 1.07515 1.21217 2.42897 2.67801 2.94008 3.18826 3.30829 3.37320 3.39007 3.65898 4.03143 4.30740 4.43670 4.51550 4.61959 4.84556 4.92419 4.92959 5.05718 5.11231 5.24429 5.41700 5.47787 5.54534 5.59135 5.70225 5.71712 5.73073 5.85408 5.88012 5.98606 6.01433 6.06257 6.09078 6.19378 6.31740 6.31921 6.35237 6.46793 6.50885 6.70496 6.89672 7.14260 7.50430 7.54084 8.08220 8.18349 8.20319 9.32823 9.84996 10.19734 11.24949 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007352 B = 0.003491 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3807.344725 B = 8019.658164 C =11548.009277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.085 0.915 4 C 0.114 3.886 5 N -0.601 5.601 6 C 0.564 3.436 7 O -0.542 6.542 8 C -0.068 4.068 9 C -0.140 4.140 10 C -0.064 4.064 11 C 0.016 3.984 12 N -0.067 5.067 13 N -0.319 5.319 14 C 0.653 3.347 15 N -0.820 5.820 16 O -0.556 6.556 17 C -0.034 4.034 18 C -0.082 4.082 19 C 0.055 3.945 20 C 0.176 3.824 21 H 0.072 0.928 22 N -0.709 5.709 23 C -0.254 4.254 24 H 0.073 0.927 25 C -0.004 4.004 26 N -0.926 5.926 27 Si 0.906 3.094 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.182 0.818 37 H 0.151 0.849 38 H 0.411 0.589 39 H 0.418 0.582 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.388 0.612 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.525 -7.453 -7.463 12.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.009 4.009 5 N -0.333 5.333 6 C 0.352 3.648 7 O -0.421 6.421 8 C -0.073 4.073 9 C -0.158 4.158 10 C -0.088 4.088 11 C -0.091 4.091 12 N 0.039 4.961 13 N -0.222 5.222 14 C 0.349 3.651 15 N -0.389 5.389 16 O -0.427 6.427 17 C -0.057 4.057 18 C -0.102 4.102 19 C -0.071 4.071 20 C 0.063 3.937 21 H 0.090 0.910 22 N -0.349 5.349 23 C -0.385 4.385 24 H 0.091 0.909 25 C -0.201 4.201 26 N -0.573 5.573 27 Si 0.737 3.263 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.198 0.802 37 H 0.168 0.832 38 H 0.241 0.759 39 H 0.251 0.749 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.222 0.778 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.289 -7.700 -8.374 13.511 hybrid contribution 0.205 -0.064 1.688 1.702 sum 7.494 -7.764 -6.686 12.694 Atomic orbital electron populations 1.21600 0.93658 1.01764 1.02053 1.22680 0.96541 0.99856 0.94445 0.89700 1.22348 0.82168 0.98343 0.97995 1.48408 1.12084 1.64883 1.07962 1.17942 0.83382 0.77747 0.85685 1.90760 1.83712 1.53360 1.14271 1.20407 0.94023 0.98745 0.94173 1.23162 1.00258 0.96917 0.95425 1.22248 0.92012 0.92961 1.01584 1.19345 0.88738 1.06509 0.94487 1.72562 1.22418 0.91973 1.09106 1.72271 1.25896 1.14098 1.09901 1.17560 0.85014 0.78337 0.84234 1.42740 1.15813 1.74989 1.05327 1.90968 1.42962 1.49758 1.58994 1.21172 0.97892 0.94198 0.92439 1.21222 0.90482 0.97422 1.01066 1.23903 1.03996 1.01261 0.77894 1.21313 0.91278 0.94083 0.87054 0.90979 1.42372 1.86183 1.06259 1.00073 1.19237 1.43522 0.92629 0.83109 0.90873 1.24762 1.01965 0.95384 0.97989 1.69651 1.55469 1.02865 1.29333 0.86218 0.77703 0.78034 0.84357 1.21536 1.21698 1.20606 0.91266 0.93119 0.92764 0.91201 0.90642 0.80198 0.83161 0.75903 0.74913 0.83420 0.83208 0.89496 0.90967 0.77769 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.29 37.16 0.35 -1.32 16 2 C -0.12 -1.60 3.27 -88.47 -0.29 -1.89 16 3 H 0.08 1.26 8.01 -51.93 -0.42 0.85 16 4 C 0.11 1.49 6.36 -2.51 -0.02 1.48 16 5 N -0.60 -8.50 3.33 -176.21 -0.59 -9.08 16 6 C 0.56 8.34 7.81 -12.26 -0.10 8.24 16 7 O -0.54 -9.25 16.66 5.34 0.09 -9.16 16 8 C -0.07 -0.87 5.88 -104.84 -0.62 -1.48 16 9 C -0.14 -1.71 8.58 -39.26 -0.34 -2.05 16 10 C -0.06 -0.76 9.47 -39.12 -0.37 -1.13 16 11 C 0.02 0.20 6.67 -84.56 -0.56 -0.36 16 12 N -0.07 -0.90 10.78 32.21 0.35 -0.55 16 13 N -0.32 -4.16 10.04 27.63 0.28 -3.89 16 14 C 0.65 8.47 8.92 -86.91 -0.78 7.69 16 15 N -0.82 -6.49 8.88 27.63 0.25 -6.25 16 16 O -0.56 -9.25 17.48 5.31 0.09 -9.16 16 17 C -0.03 -0.35 9.99 -39.12 -0.39 -0.74 16 18 C -0.08 -0.91 9.57 -39.26 -0.38 -1.28 16 19 C 0.05 0.79 4.62 -3.06 -0.01 0.78 16 20 C 0.18 2.85 3.08 -66.09 -0.20 2.64 16 21 H 0.07 1.18 7.99 -51.93 -0.41 0.76 16 22 N -0.71 -15.00 5.15 -51.65 -0.27 -15.27 16 23 C -0.25 -6.12 9.96 -15.06 -0.15 -6.27 16 24 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 25 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 26 N -0.93 -25.45 13.06 55.49 0.72 -24.73 16 27 Si 0.91 20.33 29.55 -169.99 -5.02 15.31 16 28 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 30 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.05 0.63 8.13 -51.93 -0.42 0.20 16 34 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 35 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 36 H 0.18 2.26 2.73 -58.53 -0.16 2.10 16 37 H 0.15 1.69 7.37 -52.49 -0.39 1.30 16 38 H 0.41 2.33 8.93 -40.82 -0.36 1.96 16 39 H 0.42 2.43 8.93 -40.82 -0.36 2.07 16 40 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.15 1.50 7.66 -52.49 -0.40 1.10 16 42 H 0.09 1.36 6.53 -51.93 -0.34 1.02 16 43 H 0.07 0.96 6.81 -51.93 -0.35 0.61 16 44 H 0.39 8.95 7.76 -40.82 -0.32 8.64 16 45 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -32.16 382.66 -7.87 -40.03 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -5.59 Total: 12.87 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -3.95 Total: 4.11 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.74 Total: -59.77 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.18 Total: -18.32 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.16 -7.87 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939833108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.335 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.47 seconds