Wall clock time and date at job start Wed Apr 1 2020 02:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.88521 * 2 1 4 4 C 1.54912 * 111.00554 * 236.11842 * 2 1 3 5 5 N 1.47465 * 104.81151 * 204.95106 * 4 2 1 6 6 C 1.34770 * 125.62846 * 204.14554 * 5 4 2 7 7 O 1.21532 * 120.00134 * 354.67726 * 6 5 4 8 8 C 1.48000 * 120.00135 * 174.67937 * 6 5 4 9 9 C 1.39657 * 119.95250 * 7.71117 * 8 6 5 10 10 C 1.37660 * 120.04575 * 179.76656 * 9 8 6 11 11 C 1.40038 * 119.95142 * 0.52961 * 10 9 8 12 12 N 1.36247 * 120.04542 * 179.74319 * 11 10 9 13 13 N 1.28999 * 119.99954 * 359.97438 * 12 11 10 14 14 C 1.34779 * 119.99899 * 179.97438 * 13 12 11 15 15 N 1.34778 * 120.00035 * 179.97438 * 14 13 12 16 16 O 1.21564 * 120.00080 * 0.02562 * 14 13 12 17 17 C 1.40038 * 119.90935 * 359.72176 * 11 10 9 18 18 C 1.37661 * 119.95547 * 0.02562 * 17 11 10 19 19 C 1.47027 * 108.72441 * 24.06712 * 5 4 2 20 20 C 1.54329 * 107.26854 * 358.97774 * 19 5 4 21 21 H 1.08993 * 110.72072 * 96.16822 * 20 19 5 22 22 N 1.46502 * 110.71630 * 219.44562 * 20 19 5 23 23 C 1.36947 * 119.99576 * 268.51853 * 22 20 19 24 24 H 1.07998 * 120.00091 * 0.02562 * 23 22 20 25 25 C 1.38809 * 119.99580 * 180.02562 * 23 22 20 26 26 N 1.31619 * 120.00427 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 119.99649 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.46960 * 89.99871 * 27 25 23 29 29 H 1.48497 * 109.46931 * 210.00059 * 27 25 23 30 30 H 1.48498 * 109.46939 * 329.99870 * 27 25 23 31 31 H 1.09006 * 109.47383 * 299.30067 * 1 2 3 32 32 H 1.09008 * 109.47303 * 59.29854 * 1 2 3 33 33 H 1.08994 * 109.47348 * 179.30106 * 1 2 3 34 34 H 1.08995 * 110.36197 * 323.75482 * 4 2 1 35 35 H 1.08998 * 110.36384 * 86.07681 * 4 2 1 36 36 H 1.07999 * 119.97343 * 359.97438 * 9 8 6 37 37 H 1.07994 * 120.02271 * 180.25363 * 10 9 8 38 38 H 0.97001 * 119.99726 * 0.02562 * 15 14 13 39 39 H 0.97002 * 120.00110 * 179.97438 * 15 14 13 40 40 H 1.08002 * 120.02344 * 180.02562 * 17 11 10 41 41 H 1.08001 * 119.98192 * 179.97438 * 18 17 11 42 42 H 1.09001 * 109.88457 * 239.56319 * 19 5 4 43 43 H 1.09001 * 110.01050 * 118.46180 * 19 5 4 44 44 H 0.96989 * 120.00710 * 88.52236 * 22 20 19 45 45 H 0.96995 * 120.00105 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4271 -1.2434 -0.7728 6 6 4.4480 -1.5608 -1.5933 7 8 4.2743 -1.5915 -2.7958 8 6 5.7808 -1.8720 -1.0301 9 6 5.9425 -1.9949 0.3516 10 6 7.1803 -2.2891 0.8773 11 6 8.2801 -2.4541 0.0262 12 7 9.5071 -2.7401 0.5447 13 7 9.6565 -2.8586 1.8205 14 6 10.8702 -3.1420 2.3335 15 7 11.0265 -3.2653 3.6665 16 8 11.8243 -3.2856 1.5938 17 6 8.1168 -2.3253 -1.3587 18 6 6.8762 -2.0362 -1.8806 19 6 3.4674 -1.2738 0.6966 20 6 2.0861 -0.8074 1.2026 21 1 1.4467 -1.6625 1.4216 22 7 2.2286 0.0506 2.3814 23 6 2.1999 -0.4988 3.6356 24 1 2.0726 -1.5645 3.7555 25 6 2.3344 0.3143 4.7526 26 7 2.4901 1.6130 4.6064 27 14 2.2960 -0.4352 6.4633 28 1 3.6748 -0.8040 6.8732 29 1 1.7414 0.5522 7.4238 30 1 1.4412 -1.6494 6.4526 31 1 -0.3634 0.5029 0.8962 32 1 -0.3634 0.5247 -0.8837 33 1 -0.3634 -1.0275 -0.0125 34 1 1.4519 -1.6698 -1.4030 35 1 2.1560 -0.1712 -2.0837 36 1 5.0951 -1.8624 1.0079 37 1 7.3041 -2.3881 1.9455 38 1 10.2653 -3.1503 4.2566 39 1 11.8999 -3.4696 4.0356 40 1 8.9637 -2.4526 -2.0168 41 1 6.7499 -1.9363 -2.9486 42 1 4.2426 -0.5992 1.0602 43 1 3.6661 -2.2880 1.0433 44 1 2.3433 1.0077 2.2738 45 1 2.5845 2.1810 5.3870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939833108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:06 Heat of formation + Delta-G solvation = 36.365919 kcal Electronic energy + Delta-G solvation = -29375.310858 eV Core-core repulsion = 25201.812157 eV Total energy + Delta-G solvation = -4173.498700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.73 seconds Orbital eigenvalues (eV) -41.65801 -40.04474 -39.06753 -38.45112 -37.93018 -35.77476 -34.98174 -33.84200 -33.54940 -31.18551 -30.58741 -30.46675 -28.31210 -27.72538 -26.13451 -24.42187 -22.90898 -22.65888 -21.90123 -21.29138 -20.56588 -19.86151 -19.09481 -18.21203 -17.88077 -17.59830 -17.30160 -16.78070 -16.38169 -16.00021 -15.76188 -15.45739 -15.22142 -14.92509 -14.87152 -14.81505 -14.51754 -14.42061 -14.33631 -13.92711 -13.74107 -13.70057 -13.19331 -13.10654 -12.98212 -12.89728 -12.82737 -12.23959 -12.12956 -12.04367 -11.92351 -11.76459 -11.47701 -11.04857 -10.93312 -10.92341 -10.41881 -10.15384 -9.98451 -9.57695 -9.16402 -8.32332 -7.58776 -5.41964 -1.74843 0.52808 0.75375 1.16911 1.26221 1.58852 1.67778 1.90170 2.18677 2.26593 2.61259 2.65384 2.89582 3.12224 3.28418 3.52735 3.59514 3.74978 3.84980 3.98266 4.13719 4.32838 4.36895 4.45358 4.48558 4.53781 4.63888 4.71589 4.79566 4.83333 4.95485 4.99957 5.11668 5.18940 5.22953 5.30651 5.44919 5.53264 5.68878 5.89967 6.07078 6.27651 6.32915 6.40454 6.74091 6.81865 6.97083 7.09183 7.50177 7.70644 8.14837 8.58757 9.91341 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007352 B = 0.003491 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3807.344725 B = 8019.658164 C =11548.009277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 H 0.100 0.900 4 C 0.103 3.897 5 N -0.629 5.629 6 C 0.592 3.408 7 O -0.629 6.629 8 C -0.394 4.394 9 C -0.053 4.053 10 C -0.266 4.266 11 C 0.091 3.909 12 N -0.475 5.475 13 N -0.636 5.636 14 C 0.577 3.423 15 N -0.850 5.850 16 O -0.768 6.768 17 C -0.275 4.275 18 C -0.016 4.016 19 C 0.072 3.928 20 C 0.098 3.902 21 H 0.206 0.794 22 N -0.520 5.520 23 C 0.398 3.602 24 H 0.284 0.716 25 C -0.090 4.090 26 N -0.536 5.536 27 Si 1.026 2.974 28 H -0.269 1.269 29 H -0.256 1.256 30 H -0.189 1.189 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.171 0.829 37 H 0.078 0.922 38 H 0.395 0.605 39 H 0.392 0.608 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.442 0.558 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -55.325 15.894 26.292 63.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 H 0.118 0.882 4 C -0.019 4.019 5 N -0.364 5.364 6 C 0.393 3.607 7 O -0.516 6.516 8 C -0.403 4.403 9 C -0.074 4.074 10 C -0.290 4.290 11 C -0.073 4.073 12 N -0.301 5.301 13 N -0.516 5.516 14 C 0.275 3.725 15 N -0.418 5.418 16 O -0.664 6.664 17 C -0.298 4.298 18 C -0.039 4.039 19 C -0.051 4.051 20 C -0.005 4.005 21 H 0.223 0.777 22 N -0.111 5.111 23 C 0.216 3.784 24 H 0.300 0.700 25 C -0.327 4.327 26 N -0.161 5.161 27 Si 0.839 3.161 28 H -0.194 1.194 29 H -0.179 1.179 30 H -0.109 1.109 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.187 0.813 37 H 0.096 0.904 38 H 0.223 0.777 39 H 0.222 0.778 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.127 0.873 44 H 0.285 0.715 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -54.361 15.963 24.903 61.887 hybrid contribution 2.094 0.686 0.030 2.203 sum -52.267 16.648 24.933 60.255 Atomic orbital electron populations 1.21813 0.89553 1.04502 1.03990 1.22691 0.98912 0.99232 0.90571 0.88193 1.22454 0.82342 0.98812 0.98273 1.47830 1.12045 1.70223 1.06252 1.17932 0.83512 0.74867 0.84432 1.90554 1.84722 1.59029 1.17264 1.18181 0.92074 1.36052 0.94012 1.21799 0.96143 0.95774 0.93687 1.20740 0.94552 1.16841 0.96832 1.18894 0.90641 1.04482 0.93239 1.71583 1.22513 1.24833 1.11153 1.71461 1.20320 1.50359 1.09412 1.18536 0.87258 0.82907 0.83801 1.41893 1.12858 1.82427 1.04622 1.90424 1.47295 1.67525 1.61155 1.19765 0.95790 1.20858 0.93396 1.20196 0.92029 0.95355 0.96298 1.23071 0.96473 1.04012 0.81591 1.23861 0.97186 0.95979 0.83438 0.77690 1.47201 1.40989 1.15846 1.07063 1.27159 0.65959 1.04419 0.80849 0.70018 1.28709 0.98891 0.96217 1.08847 1.69658 0.94663 1.06680 1.45110 0.84248 0.82189 0.81950 0.67760 1.19380 1.17924 1.10883 0.89074 0.92239 0.89903 0.89825 0.92786 0.81311 0.90362 0.77689 0.77830 0.93635 0.90351 0.90467 0.87257 0.71506 0.79887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 1.30 9.29 71.98 0.67 1.97 16 2 C -0.09 0.35 3.27 -9.40 -0.03 0.32 16 3 H 0.10 -0.32 8.01 -2.38 -0.02 -0.34 16 4 C 0.10 1.28 6.36 86.85 0.55 1.83 16 5 N -0.63 -14.90 3.33 -829.68 -2.76 -17.66 16 6 C 0.59 25.91 7.81 86.83 0.68 26.58 16 7 O -0.63 -32.60 16.66 -3.82 -0.06 -32.66 16 8 C -0.39 -21.35 5.88 -20.00 -0.12 -21.47 16 9 C -0.05 -2.63 8.58 22.48 0.19 -2.43 16 10 C -0.27 -17.32 9.47 22.57 0.21 -17.11 16 11 C 0.09 7.13 6.67 39.33 0.26 7.40 16 12 N -0.47 -42.12 10.78 -52.02 -0.56 -42.68 16 13 N -0.64 -53.08 10.04 -184.76 -1.85 -54.93 16 14 C 0.58 46.48 8.92 179.05 1.60 48.08 16 15 N -0.85 -51.21 8.88 -184.76 -1.64 -52.85 16 16 O -0.77 -69.44 17.48 -3.92 -0.07 -69.51 16 17 C -0.27 -20.63 9.99 22.57 0.23 -20.40 16 18 C -0.02 -1.07 9.57 22.48 0.22 -0.86 16 19 C 0.07 0.62 4.62 86.73 0.40 1.02 16 20 C 0.10 -1.03 3.08 46.18 0.14 -0.88 16 21 H 0.21 -4.32 7.99 -2.39 -0.02 -4.34 16 22 N -0.52 9.26 5.15 -317.32 -1.63 7.63 16 23 C 0.40 -9.69 9.96 84.03 0.84 -8.85 16 24 H 0.28 -10.26 7.83 -2.91 -0.02 -10.29 16 25 C -0.09 1.76 5.50 84.86 0.47 2.22 16 26 N -0.54 7.67 13.06 21.65 0.28 7.95 16 27 Si 1.03 -16.36 29.55 68.60 2.03 -14.34 16 28 H -0.27 1.81 7.11 99.48 0.71 2.52 16 29 H -0.26 3.00 7.11 99.48 0.71 3.70 16 30 H -0.19 3.67 7.11 99.48 0.71 4.37 16 31 H 0.09 -1.34 8.14 -2.38 -0.02 -1.36 16 32 H 0.06 -0.27 8.14 -2.38 -0.02 -0.29 16 33 H 0.08 -0.89 8.13 -2.39 -0.02 -0.91 16 34 H 0.08 0.83 8.03 -2.39 -0.02 0.81 16 35 H 0.05 1.04 8.09 -2.39 -0.02 1.02 16 36 H 0.17 5.22 2.73 -8.59 -0.02 5.19 16 37 H 0.08 5.09 7.37 -2.91 -0.02 5.07 16 38 H 0.40 20.48 8.93 -92.71 -0.83 19.65 16 39 H 0.39 20.77 8.93 -92.71 -0.83 19.94 16 40 H 0.05 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.08 4.97 7.66 -2.91 -0.02 4.95 16 42 H 0.08 0.96 6.53 -2.39 -0.02 0.95 16 43 H 0.11 0.90 6.81 -2.39 -0.02 0.88 16 44 H 0.44 -7.35 7.76 -92.72 -0.72 -8.07 16 45 H 0.38 -5.71 8.31 -92.71 -0.77 -6.48 16 Total: -1.00 -209.85 382.66 -1.27 -211.13 By element: Atomic # 1 Polarization: 41.81 SS G_CDS: -1.31 Total: 40.50 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 6.30 Total: 17.42 kcal Atomic # 7 Polarization: -144.37 SS G_CDS: -8.17 Total: -152.54 kcal Atomic # 8 Polarization: -102.04 SS G_CDS: -0.13 Total: -102.17 kcal Atomic # 14 Polarization: -16.36 SS G_CDS: 2.03 Total: -14.34 kcal Total: -209.85 -1.27 -211.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939833108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.492 kcal (2) G-P(sol) polarization free energy of solvation -209.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -211.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.74 seconds