Wall clock time and date at job start Wed Apr 1 2020 03:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47163 * 2 1 4 4 N 1.46500 * 109.47497 * 239.99361 * 2 1 3 5 5 C 1.34778 * 119.99688 * 85.00316 * 4 2 1 6 6 O 1.21491 * 120.00080 * 359.97438 * 5 4 2 7 7 C 1.48335 * 119.99857 * 180.02562 * 5 4 2 8 8 C 1.42267 * 126.93899 * 179.97438 * 7 5 4 9 9 C 1.35317 * 103.92635 * 180.02562 * 8 7 5 10 10 C 1.50699 * 126.66932 * 179.97438 * 9 8 7 11 11 N 1.46497 * 109.46592 * 90.00182 * 10 9 8 12 12 C 1.34956 * 126.03223 * 124.71994 * 11 10 9 13 13 C 1.35318 * 107.74330 * 179.83398 * 12 11 10 14 14 C 1.39868 * 107.92103 * 0.42467 * 13 12 11 15 15 N 1.30843 * 108.20291 * 359.73657 * 14 13 12 16 16 O 1.34018 * 106.66423 * 0.26152 * 9 8 7 17 17 N 1.20911 * 111.84317 * 359.52404 * 16 9 8 18 18 C 1.52999 * 109.47009 * 119.99483 * 2 1 3 19 19 C 1.53945 * 113.74286 * 281.83584 * 18 2 1 20 20 N 1.47578 * 86.11844 * 222.04751 * 19 18 2 21 21 C 1.36945 * 134.48851 * 204.64148 * 20 19 18 22 22 H 1.07996 * 119.99246 * 180.02562 * 21 20 19 23 23 C 1.38808 * 120.00024 * 0.02562 * 21 20 19 24 24 N 1.31610 * 120.00206 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99725 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46991 * 59.99964 * 25 23 21 27 27 H 1.48491 * 109.47047 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47005 * 300.00189 * 25 23 21 29 29 C 1.47572 * 91.01449 * 24.64091 * 20 19 18 30 30 H 1.09000 * 109.47435 * 295.54501 * 1 2 3 31 31 H 1.09004 * 109.47008 * 55.54996 * 1 2 3 32 32 H 1.09001 * 109.47126 * 175.54334 * 1 2 3 33 33 H 0.97001 * 120.00299 * 265.00477 * 4 2 1 34 34 H 1.08006 * 128.03946 * 359.97438 * 8 7 5 35 35 H 1.08997 * 109.46892 * 330.00189 * 10 9 8 36 36 H 1.08997 * 109.46965 * 210.00094 * 10 9 8 37 37 H 1.07999 * 126.12720 * 359.97438 * 12 11 10 38 38 H 1.07993 * 126.04109 * 180.15303 * 13 12 11 39 39 H 1.08001 * 125.90259 * 179.75550 * 14 13 12 40 40 H 1.09002 * 112.94450 * 53.57415 * 18 2 1 41 41 H 1.08998 * 113.76925 * 336.35528 * 19 18 2 42 42 H 1.09007 * 113.76520 * 107.74512 * 19 18 2 43 43 H 0.97006 * 119.99688 * 180.02562 * 24 23 21 44 44 H 1.09004 * 113.77240 * 221.05847 * 29 20 19 45 45 H 1.09003 * 113.77029 * 89.66040 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8578 1.1603 -2.4118 7 6 2.6412 -0.7179 -3.5683 8 6 2.8323 -0.1567 -4.8615 9 6 3.2900 -1.1928 -5.6018 10 6 3.6599 -1.1612 -7.0623 11 7 5.0773 -0.8176 -7.1997 12 6 6.0091 -1.5395 -7.8570 13 6 7.1878 -0.8829 -7.7538 14 6 6.9710 0.2749 -6.9997 15 7 5.7062 0.3151 -6.6670 16 8 3.3446 -2.2540 -4.7852 17 7 2.9890 -1.9771 -3.6632 18 6 2.0399 -0.7211 1.2493 19 6 1.9740 0.1330 2.5283 20 7 3.3070 -0.4163 2.8436 21 6 4.0155 -0.6121 3.9991 22 1 5.0038 -1.0456 3.9594 23 6 3.4632 -0.2536 5.2211 24 7 2.2585 0.2741 5.2693 25 14 4.4294 -0.5216 6.7972 26 1 5.6980 0.2482 6.7371 27 1 3.6245 -0.0586 7.9560 28 1 4.7342 -1.9668 6.9513 29 6 3.5697 -0.6696 1.4137 30 1 -0.3634 0.4431 0.9272 31 1 -0.3633 0.5814 -0.8475 32 1 -0.3633 -1.0246 -0.0799 33 1 2.2490 -1.6319 -1.1525 34 1 2.6528 0.8600 -5.1790 35 1 3.0536 -0.4142 -7.5746 36 1 3.4791 -2.1411 -7.5041 37 1 5.8432 -2.4726 -8.3747 38 1 8.1304 -1.1994 -8.1752 39 1 7.7183 1.0092 -6.7375 40 1 1.6196 -1.7202 1.3646 41 1 1.9744 1.2066 2.3402 42 1 1.1948 -0.1778 3.2245 43 1 1.8728 0.5249 6.1233 44 1 4.0647 -1.6212 1.2198 45 1 4.0390 0.1683 0.8981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970715476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:33 Heat of formation + Delta-G solvation = 170.509517 kcal Electronic energy + Delta-G solvation = -28943.086122 eV Core-core repulsion = 24775.404325 eV Total energy + Delta-G solvation = -4167.681797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.43846 -41.48362 -39.84124 -38.07246 -35.25145 -34.87681 -34.20688 -32.19444 -31.69824 -30.48371 -30.31131 -27.48366 -27.24228 -25.50036 -24.57547 -23.82549 -23.08657 -21.71539 -21.47449 -21.02694 -20.19539 -19.10154 -18.37268 -18.08195 -17.28315 -16.97122 -16.77615 -16.10195 -15.75212 -14.99206 -14.87813 -14.77321 -14.47225 -14.23083 -14.01610 -13.92989 -13.69538 -13.58970 -13.25441 -13.19009 -12.79122 -12.35554 -12.10595 -11.89999 -11.63421 -11.40998 -11.23729 -11.05003 -10.88385 -10.74047 -10.68477 -10.37391 -10.36045 -10.06738 -9.89107 -9.84666 -9.79007 -9.42552 -9.04905 -8.96298 -8.78019 -6.86744 -5.75600 -3.07766 0.69779 1.22380 1.47476 2.20859 2.43106 2.50223 2.90564 3.09854 3.40837 3.44659 3.46053 3.69299 3.97143 4.06891 4.38705 4.46318 4.56495 4.58543 4.71396 4.91875 4.99685 5.12173 5.16191 5.18464 5.36949 5.38443 5.51424 5.53605 5.62462 5.62650 5.78827 5.96359 6.04517 6.22999 6.23653 6.35215 6.43899 6.50747 6.51168 6.62232 6.75792 7.22478 7.29179 7.36199 7.39690 7.56567 7.69250 7.99537 8.08955 9.06205 9.72044 10.61242 11.41655 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.002029 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.161562 B =13793.986725 C =14889.427910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.149 3.851 3 H 0.091 0.909 4 N -0.700 5.700 5 C 0.595 3.405 6 O -0.523 6.523 7 C -0.023 4.023 8 C -0.134 4.134 9 C -0.072 4.072 10 C 0.225 3.775 11 N -0.381 5.381 12 C 0.057 3.943 13 C -0.270 4.270 14 C 0.049 3.951 15 N -0.286 5.286 16 O 0.130 5.870 17 N -0.320 5.320 18 C -0.148 4.148 19 C 0.177 3.823 20 N -0.612 5.612 21 C -0.223 4.223 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.922 5.922 25 Si 0.913 3.087 26 H -0.285 1.285 27 H -0.289 1.289 28 H -0.284 1.284 29 C 0.124 3.876 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.405 0.595 34 H 0.184 0.816 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.177 0.823 38 H 0.149 0.851 39 H 0.185 0.815 40 H 0.090 0.910 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.254 0.746 44 H 0.041 0.959 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 -5.448 -31.176 31.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.109 0.891 4 N -0.350 5.350 5 C 0.378 3.622 6 O -0.397 6.397 7 C -0.182 4.182 8 C -0.157 4.157 9 C -0.135 4.135 10 C 0.103 3.897 11 N -0.165 5.165 12 C -0.088 4.088 13 C -0.300 4.300 14 C -0.138 4.138 15 N -0.106 5.106 16 O 0.051 5.949 17 N -0.018 5.018 18 C -0.168 4.168 19 C 0.051 3.949 20 N -0.338 5.338 21 C -0.351 4.351 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.743 3.257 26 H -0.212 1.212 27 H -0.215 1.215 28 H -0.211 1.211 29 C -0.002 4.002 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.201 0.799 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.194 0.806 38 H 0.167 0.833 39 H 0.201 0.799 40 H 0.108 0.892 41 H 0.046 0.954 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.184 -4.943 -29.245 29.661 hybrid contribution 1.359 -0.262 0.127 1.390 sum 1.543 -5.206 -29.118 29.620 Atomic orbital electron populations 1.22122 0.95040 1.01878 1.02654 1.21252 0.94082 0.97547 0.82565 0.89084 1.46046 1.65378 1.14416 1.09199 1.16846 0.78114 0.85847 0.81362 1.90807 1.50184 1.14534 1.84197 1.23679 1.06012 0.90944 0.97572 1.22496 1.01104 1.01435 0.90627 1.24183 1.05931 0.87391 0.96020 1.19886 0.78279 1.04542 0.87008 1.48687 1.07710 1.18064 1.42020 1.22634 0.89221 0.98440 0.98493 1.21581 0.99075 0.98796 1.10506 1.24012 0.93935 0.98560 0.97284 1.77492 1.08340 1.04539 1.20275 1.84788 1.61501 1.34708 1.13891 1.74187 1.12230 1.16576 0.98834 1.23890 0.97693 1.00876 0.94359 1.22192 0.89728 0.93853 0.89122 1.45923 1.16297 1.71917 0.99615 1.18977 0.98366 1.34987 0.82763 0.90359 1.24783 0.97069 1.01128 0.97502 1.69794 1.15201 1.47382 1.24540 0.86192 0.78874 0.77842 0.82806 1.21195 1.21521 1.21083 1.22547 0.93036 0.97739 0.86873 0.90662 0.92692 0.92648 0.76066 0.79888 0.85964 0.85861 0.80591 0.83313 0.79855 0.89168 0.95373 0.90573 0.93563 0.94095 0.95027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.46 37.15 0.35 -1.93 16 2 C 0.15 2.41 2.29 -67.93 -0.16 2.26 16 3 H 0.09 1.65 7.48 -51.93 -0.39 1.27 16 4 N -0.70 -10.27 4.95 -54.60 -0.27 -10.54 16 5 C 0.60 9.18 7.81 -12.10 -0.09 9.09 16 6 O -0.52 -9.44 16.61 5.37 0.09 -9.35 16 7 C -0.02 -0.30 7.19 -82.53 -0.59 -0.90 16 8 C -0.13 -1.42 10.92 -39.08 -0.43 -1.84 16 9 C -0.07 -0.60 6.91 -35.35 -0.24 -0.84 16 10 C 0.23 1.01 7.07 -5.20 -0.04 0.97 16 11 N -0.38 -2.79 3.67 -62.55 -0.23 -3.02 16 12 C 0.06 0.32 11.45 -17.22 -0.20 0.12 16 13 C -0.27 -1.78 10.80 -40.01 -0.43 -2.21 16 14 C 0.05 0.41 12.03 -17.36 -0.21 0.20 16 15 N -0.29 -2.94 12.41 30.63 0.38 -2.56 16 16 O 0.13 1.33 11.18 17.24 0.19 1.52 16 17 N -0.32 -3.98 11.84 33.29 0.39 -3.59 16 18 C -0.15 -2.76 3.36 -89.69 -0.30 -3.06 16 19 C 0.18 4.18 6.90 -2.98 -0.02 4.16 16 20 N -0.61 -16.12 3.70 -177.91 -0.66 -16.78 16 21 C -0.22 -6.44 10.70 -15.06 -0.16 -6.60 16 22 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 23 C -0.01 -0.24 5.50 -17.44 -0.10 -0.34 16 24 N -0.92 -27.68 11.38 55.49 0.63 -27.04 16 25 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 29 C 0.12 2.64 8.37 -2.98 -0.02 2.61 16 30 H 0.07 1.09 7.99 -51.93 -0.42 0.67 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.40 5.42 8.36 -40.82 -0.34 5.08 16 34 H 0.18 1.76 8.06 -52.48 -0.42 1.33 16 35 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.12 0.10 8.07 -51.93 -0.42 -0.32 16 37 H 0.18 0.30 8.06 -52.49 -0.42 -0.12 16 38 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 41 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 42 H 0.08 1.96 7.15 -51.93 -0.37 1.59 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 391.64 15.07 5.90 5.90 Total: -1.00 -36.79 391.64 -7.36 -44.15 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.12 Total: 2.12 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -2.64 Total: 1.69 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: 0.25 Total: -63.54 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.28 Total: -7.83 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.79 -7.36 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970715476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.660 kcal (2) G-P(sol) polarization free energy of solvation -36.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds