Wall clock time and date at job start Wed Apr 1 2020 03:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47163 * 2 1 4 4 N 1.46500 * 109.47497 * 239.99361 * 2 1 3 5 5 C 1.34778 * 119.99688 * 85.00316 * 4 2 1 6 6 O 1.21491 * 120.00080 * 359.97438 * 5 4 2 7 7 C 1.48335 * 119.99857 * 180.02562 * 5 4 2 8 8 C 1.42267 * 126.93899 * 179.97438 * 7 5 4 9 9 C 1.35317 * 103.92635 * 180.02562 * 8 7 5 10 10 C 1.50699 * 126.66932 * 179.97438 * 9 8 7 11 11 N 1.46497 * 109.46592 * 90.00182 * 10 9 8 12 12 C 1.34956 * 126.03223 * 124.71994 * 11 10 9 13 13 C 1.35318 * 107.74330 * 179.83398 * 12 11 10 14 14 C 1.39868 * 107.92103 * 0.42467 * 13 12 11 15 15 N 1.30843 * 108.20291 * 359.73657 * 14 13 12 16 16 O 1.34018 * 106.66423 * 0.26152 * 9 8 7 17 17 N 1.20911 * 111.84317 * 359.52404 * 16 9 8 18 18 C 1.52999 * 109.47009 * 119.99483 * 2 1 3 19 19 C 1.53945 * 113.74286 * 281.83584 * 18 2 1 20 20 N 1.47578 * 86.11844 * 222.04751 * 19 18 2 21 21 C 1.36945 * 134.48851 * 204.64148 * 20 19 18 22 22 H 1.07996 * 119.99246 * 180.02562 * 21 20 19 23 23 C 1.38808 * 120.00024 * 0.02562 * 21 20 19 24 24 N 1.31610 * 120.00206 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99725 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46991 * 59.99964 * 25 23 21 27 27 H 1.48491 * 109.47047 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47005 * 300.00189 * 25 23 21 29 29 C 1.47572 * 91.01449 * 24.64091 * 20 19 18 30 30 H 1.09000 * 109.47435 * 295.54501 * 1 2 3 31 31 H 1.09004 * 109.47008 * 55.54996 * 1 2 3 32 32 H 1.09001 * 109.47126 * 175.54334 * 1 2 3 33 33 H 0.97001 * 120.00299 * 265.00477 * 4 2 1 34 34 H 1.08006 * 128.03946 * 359.97438 * 8 7 5 35 35 H 1.08997 * 109.46892 * 330.00189 * 10 9 8 36 36 H 1.08997 * 109.46965 * 210.00094 * 10 9 8 37 37 H 1.07999 * 126.12720 * 359.97438 * 12 11 10 38 38 H 1.07993 * 126.04109 * 180.15303 * 13 12 11 39 39 H 1.08001 * 125.90259 * 179.75550 * 14 13 12 40 40 H 1.09002 * 112.94450 * 53.57415 * 18 2 1 41 41 H 1.08998 * 113.76925 * 336.35528 * 19 18 2 42 42 H 1.09007 * 113.76520 * 107.74512 * 19 18 2 43 43 H 0.97006 * 119.99688 * 180.02562 * 24 23 21 44 44 H 1.09004 * 113.77240 * 221.05847 * 29 20 19 45 45 H 1.09003 * 113.77029 * 89.66040 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8578 1.1603 -2.4118 7 6 2.6412 -0.7179 -3.5683 8 6 2.8323 -0.1567 -4.8615 9 6 3.2900 -1.1928 -5.6018 10 6 3.6599 -1.1612 -7.0623 11 7 5.0773 -0.8176 -7.1997 12 6 6.0091 -1.5395 -7.8570 13 6 7.1878 -0.8829 -7.7538 14 6 6.9710 0.2749 -6.9997 15 7 5.7062 0.3151 -6.6670 16 8 3.3446 -2.2540 -4.7852 17 7 2.9890 -1.9771 -3.6632 18 6 2.0399 -0.7211 1.2493 19 6 1.9740 0.1330 2.5283 20 7 3.3070 -0.4163 2.8436 21 6 4.0155 -0.6121 3.9991 22 1 5.0038 -1.0456 3.9594 23 6 3.4632 -0.2536 5.2211 24 7 2.2585 0.2741 5.2693 25 14 4.4294 -0.5216 6.7972 26 1 5.6980 0.2482 6.7371 27 1 3.6245 -0.0586 7.9560 28 1 4.7342 -1.9668 6.9513 29 6 3.5697 -0.6696 1.4137 30 1 -0.3634 0.4431 0.9272 31 1 -0.3633 0.5814 -0.8475 32 1 -0.3633 -1.0246 -0.0799 33 1 2.2490 -1.6319 -1.1525 34 1 2.6528 0.8600 -5.1790 35 1 3.0536 -0.4142 -7.5746 36 1 3.4791 -2.1411 -7.5041 37 1 5.8432 -2.4726 -8.3747 38 1 8.1304 -1.1994 -8.1752 39 1 7.7183 1.0092 -6.7375 40 1 1.6196 -1.7202 1.3646 41 1 1.9744 1.2066 2.3402 42 1 1.1948 -0.1778 3.2245 43 1 1.8728 0.5249 6.1233 44 1 4.0647 -1.6212 1.2198 45 1 4.0390 0.1683 0.8981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970715476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:30 Heat of formation + Delta-G solvation = 144.986398 kcal Electronic energy + Delta-G solvation = -28944.192887 eV Core-core repulsion = 24775.404325 eV Total energy + Delta-G solvation = -4168.788563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.23 seconds Orbital eigenvalues (eV) -46.31019 -41.95316 -41.18150 -39.73986 -36.40996 -35.75974 -35.11716 -34.18202 -32.48034 -31.78503 -30.83190 -29.39645 -27.76195 -26.90311 -26.16705 -25.46767 -23.99842 -22.83299 -22.07029 -21.89903 -21.43301 -20.57157 -19.13832 -18.99367 -18.77893 -18.03993 -17.80150 -17.41323 -16.88798 -16.36586 -16.19136 -15.87215 -15.78124 -15.32631 -15.07305 -14.93574 -14.79351 -14.53222 -14.29404 -14.11523 -13.67419 -13.50035 -13.33098 -13.25604 -13.17067 -13.00899 -12.70838 -12.65804 -12.48042 -12.13316 -11.89240 -11.71582 -11.65287 -11.56262 -11.41491 -11.26411 -10.90055 -10.82332 -10.41713 -10.27800 -9.51564 -8.97651 -7.94274 -5.28652 -0.12681 0.37491 0.99118 1.42770 1.46667 1.52910 1.66432 1.76686 1.87282 1.96929 2.00877 2.44162 2.74119 3.24829 3.26865 3.32745 3.64631 3.68475 3.78483 3.85783 4.02694 4.10236 4.17253 4.19027 4.34846 4.37861 4.40555 4.47962 4.67335 4.73333 4.74005 4.75868 4.78662 4.86205 4.96389 4.97295 5.18973 5.20381 5.23876 5.32176 5.48432 5.56953 5.74144 5.89772 6.15691 6.22736 6.77457 6.81212 6.88201 6.92339 7.56014 8.51374 9.22443 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.002029 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.161562 B =13793.986725 C =14889.427910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.160 3.840 3 H 0.069 0.931 4 N -0.693 5.693 5 C 0.596 3.404 6 O -0.556 6.556 7 C -0.047 4.047 8 C -0.151 4.151 9 C -0.046 4.046 10 C 0.219 3.781 11 N -0.386 5.386 12 C 0.068 3.932 13 C -0.288 4.288 14 C 0.033 3.967 15 N -0.339 5.339 16 O 0.143 5.857 17 N -0.333 5.333 18 C -0.111 4.111 19 C 0.174 3.826 20 N -0.643 5.643 21 C -0.241 4.241 22 H 0.081 0.919 23 C -0.066 4.066 24 N -0.952 5.952 25 Si 0.982 3.018 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.273 1.273 29 C 0.125 3.875 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.413 0.587 34 H 0.187 0.813 35 H 0.144 0.856 36 H 0.171 0.829 37 H 0.220 0.780 38 H 0.166 0.834 39 H 0.192 0.808 40 H 0.106 0.894 41 H 0.015 0.985 42 H 0.051 0.949 43 H 0.250 0.750 44 H 0.056 0.944 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 -7.716 -33.643 34.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.056 3.944 3 H 0.087 0.913 4 N -0.344 5.344 5 C 0.381 3.619 6 O -0.433 6.433 7 C -0.204 4.204 8 C -0.174 4.174 9 C -0.110 4.110 10 C 0.098 3.902 11 N -0.170 5.170 12 C -0.077 4.077 13 C -0.317 4.317 14 C -0.154 4.154 15 N -0.161 5.161 16 O 0.061 5.939 17 N -0.030 5.030 18 C -0.131 4.131 19 C 0.048 3.952 20 N -0.369 5.369 21 C -0.369 4.369 22 H 0.099 0.901 23 C -0.260 4.260 24 N -0.601 5.601 25 Si 0.809 3.191 26 H -0.206 1.206 27 H -0.217 1.217 28 H -0.199 1.199 29 C 0.000 4.000 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.249 0.751 34 H 0.204 0.796 35 H 0.162 0.838 36 H 0.189 0.811 37 H 0.237 0.763 38 H 0.183 0.817 39 H 0.209 0.791 40 H 0.124 0.876 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.693 -7.231 -31.726 32.547 hybrid contribution 1.271 0.415 0.752 1.534 sum 1.964 -6.816 -30.975 31.776 Atomic orbital electron populations 1.22053 0.93275 1.03087 1.02572 1.20941 0.95314 0.96025 0.82142 0.91300 1.45880 1.65250 1.14663 1.08609 1.17100 0.77368 0.85504 0.81959 1.90783 1.51661 1.15981 1.84847 1.23439 1.07801 0.91674 0.97505 1.22631 1.02355 1.02354 0.90086 1.24793 1.03322 0.85729 0.97158 1.20484 0.77360 1.07951 0.84390 1.48863 1.08715 1.17508 1.41957 1.23342 0.88252 0.99042 0.97071 1.21920 1.00524 0.98512 1.10773 1.24370 0.93876 0.99621 0.97489 1.77418 1.09412 1.06784 1.22441 1.84756 1.60475 1.35179 1.13480 1.74172 1.12630 1.16178 0.99988 1.23487 0.95849 1.00571 0.93170 1.22090 0.88241 0.93750 0.91092 1.46348 1.17339 1.72244 1.00981 1.19379 0.98757 1.34684 0.84126 0.90092 1.25668 0.98180 1.01358 1.00745 1.69983 1.16663 1.48519 1.24891 0.85115 0.77403 0.78140 0.78436 1.20580 1.21738 1.19911 1.22668 0.94983 0.98162 0.84230 0.90975 0.92530 0.90795 0.75060 0.79590 0.83810 0.81140 0.76341 0.81680 0.79104 0.87627 0.96752 0.93079 0.94060 0.92554 0.95234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 9.46 71.98 0.68 -3.58 16 2 C 0.16 5.16 2.29 44.99 0.10 5.27 16 3 H 0.07 2.57 7.48 -2.39 -0.02 2.55 16 4 N -0.69 -19.99 4.95 -444.95 -2.20 -22.19 16 5 C 0.60 18.44 7.81 86.93 0.68 19.12 16 6 O -0.56 -20.53 16.61 -3.69 -0.06 -20.59 16 7 C -0.05 -1.21 7.19 42.96 0.31 -0.90 16 8 C -0.15 -3.07 10.92 22.60 0.25 -2.83 16 9 C -0.05 -0.66 6.91 25.01 0.17 -0.48 16 10 C 0.22 1.15 7.07 85.63 0.61 1.75 16 11 N -0.39 -4.60 3.67 -351.80 -1.29 -5.89 16 12 C 0.07 0.52 11.45 83.54 0.96 1.48 16 13 C -0.29 -3.23 10.80 21.99 0.24 -2.99 16 14 C 0.03 0.53 12.03 85.23 1.02 1.55 16 15 N -0.34 -6.71 12.41 -57.02 -0.71 -7.41 16 16 O 0.14 2.58 11.18 71.85 0.80 3.38 16 17 N -0.33 -7.85 11.84 -49.51 -0.59 -8.43 16 18 C -0.11 -4.11 3.36 -10.13 -0.03 -4.14 16 19 C 0.17 8.46 6.90 86.48 0.60 9.05 16 20 N -0.64 -34.41 3.70 -716.79 -2.65 -37.06 16 21 C -0.24 -14.06 10.70 84.03 0.90 -13.16 16 22 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 23 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 24 N -0.95 -58.50 11.38 21.65 0.25 -58.25 16 25 Si 0.98 46.74 29.55 68.60 2.03 48.76 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 28 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 29 C 0.12 5.28 8.37 86.48 0.72 6.00 16 30 H 0.07 2.07 7.99 -2.39 -0.02 2.05 16 31 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.41 10.57 8.36 -92.71 -0.78 9.80 16 34 H 0.19 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.17 -0.71 8.07 -2.39 -0.02 -0.72 16 37 H 0.22 -0.42 8.06 -2.91 -0.02 -0.44 16 38 H 0.17 1.13 8.06 -2.91 -0.02 1.10 16 39 H 0.19 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 41 H 0.01 0.74 8.03 -2.39 -0.02 0.72 16 42 H 0.05 2.72 7.15 -2.38 -0.02 2.71 16 43 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 44 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.03 1.29 8.10 -2.39 -0.02 1.27 16 Total: -1.00 -82.68 391.64 3.50 -79.18 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.25 Total: 15.77 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 7.67 Total: 12.73 kcal Atomic # 7 Polarization: -132.05 SS G_CDS: -7.19 Total: -139.24 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.74 Total: -17.21 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -82.68 3.50 -79.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970715476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.168 kcal (2) G-P(sol) polarization free energy of solvation -82.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.23 seconds