Wall clock time and date at job start Wed Apr 1 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88710 * 2 1 4 4 C 1.54904 * 111.00855 * 123.88740 * 2 1 3 5 5 N 1.47420 * 104.83635 * 155.08338 * 4 2 1 6 6 C 1.34774 * 125.64951 * 155.83786 * 5 4 2 7 7 O 1.21499 * 120.00191 * 359.97438 * 6 5 4 8 8 C 1.48349 * 120.00027 * 180.02562 * 6 5 4 9 9 C 1.41896 * 126.84161 * 179.71258 * 8 6 5 10 10 C 1.36730 * 103.81518 * 179.85205 * 9 8 6 11 11 C 1.47860 * 126.81560 * 180.08947 * 10 9 8 12 12 C 1.41042 * 126.06275 * 180.34703 * 11 10 9 13 13 C 1.35007 * 107.83999 * 179.97438 * 12 11 10 14 14 N 1.35086 * 108.03628 * 359.97438 * 13 12 11 15 15 C 1.46501 * 125.91292 * 179.97438 * 14 13 12 16 16 N 1.31818 * 126.06554 * 0.03325 * 11 10 9 17 17 O 1.34459 * 106.36363 * 0.39902 * 10 9 8 18 18 N 1.20869 * 111.73624 * 359.72418 * 17 10 9 19 19 C 1.47018 * 108.70193 * 335.87134 * 5 4 2 20 20 C 1.54371 * 107.28954 * 1.09430 * 19 5 4 21 21 H 1.09000 * 110.69938 * 263.79651 * 20 19 5 22 22 N 1.46495 * 110.75708 * 140.50781 * 20 19 5 23 23 C 1.36938 * 120.00366 * 91.48243 * 22 20 19 24 24 H 1.08001 * 119.99728 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00190 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99900 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00077 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46937 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47068 * 120.00125 * 27 25 23 30 30 H 1.48492 * 109.47553 * 240.00218 * 27 25 23 31 31 H 1.09002 * 109.47153 * 300.69429 * 1 2 3 32 32 H 1.09001 * 109.46832 * 180.69620 * 1 2 3 33 33 H 1.09004 * 109.47261 * 60.69601 * 1 2 3 34 34 H 1.09004 * 110.36628 * 273.92431 * 4 2 1 35 35 H 1.09001 * 110.36876 * 36.13074 * 4 2 1 36 36 H 1.08000 * 128.09099 * 359.95218 * 9 8 6 37 37 H 1.08002 * 126.08030 * 359.95975 * 12 11 10 38 38 H 1.08004 * 125.98028 * 180.02562 * 13 12 11 39 39 H 1.09007 * 109.46736 * 89.99848 * 15 14 13 40 40 H 1.08995 * 109.47403 * 209.99899 * 15 14 13 41 41 H 1.09002 * 109.47254 * 330.00485 * 15 14 13 42 42 H 1.09002 * 109.88343 * 120.47841 * 19 5 4 43 43 H 1.09000 * 109.88049 * 241.48392 * 19 5 4 44 44 H 0.96999 * 120.00014 * 271.47886 * 22 20 19 45 45 H 0.97000 * 119.99593 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 1.2004 5 7 3.4271 -1.2428 0.7736 6 6 4.4481 -1.5598 1.5943 7 8 4.3015 -1.4964 2.7988 8 6 5.7512 -1.9852 1.0271 9 6 6.9177 -2.3441 1.7509 10 6 7.8246 -2.6540 0.7757 11 6 9.2207 -3.0990 0.9732 12 6 10.1456 -3.4082 -0.0457 13 6 11.3045 -3.7716 0.5439 14 7 11.1337 -3.6991 1.8820 15 6 12.1448 -4.0100 2.8954 16 7 9.8236 -3.2715 2.1327 17 8 7.1969 -2.4671 -0.3986 18 7 6.0562 -2.0990 -0.2428 19 6 3.4674 -1.2743 -0.6957 20 6 2.0861 -0.8073 -1.2026 21 1 1.4468 -1.6625 -1.4217 22 7 2.2286 0.0507 -2.3815 23 6 2.1999 -0.4985 -3.6356 24 1 2.0726 -1.5643 -3.7556 25 6 2.3344 0.3145 -4.7526 26 7 2.4900 1.6133 -4.6063 27 14 2.2959 -0.4347 -6.4633 28 1 2.1119 -1.9044 -6.3560 29 1 1.1695 0.1497 -7.2345 30 1 3.5752 -0.1452 -7.1595 31 1 -0.3633 0.5246 0.8837 32 1 -0.3633 -1.0276 0.0125 33 1 -0.3634 0.5030 -0.8962 34 1 2.1560 -0.1714 2.0837 35 1 1.4509 -1.6689 1.4041 36 1 7.0562 -2.3686 2.8217 37 1 9.9598 -3.3627 -1.1087 38 1 12.2099 -4.0676 0.0349 39 1 12.7095 -3.1086 3.1338 40 1 11.6549 -4.3805 3.7958 41 1 12.8225 -4.7722 2.5107 42 1 4.2426 -0.6000 -1.0599 43 1 3.6678 -2.2891 -1.0394 44 1 2.3432 1.0078 -2.2738 45 1 2.5843 2.1814 -5.3869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054718910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:25 Heat of formation + Delta-G solvation = 135.656169 kcal Electronic energy + Delta-G solvation = -29319.481804 eV Core-core repulsion = 25150.288652 eV Total energy + Delta-G solvation = -4169.193152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -45.06342 -41.49150 -39.78948 -37.59295 -34.50876 -34.16738 -33.88689 -32.48062 -31.59962 -30.68334 -30.48354 -27.55857 -27.16023 -26.79551 -24.39482 -23.71030 -23.43147 -21.99337 -21.25090 -21.00058 -19.96221 -18.97511 -17.89431 -17.83864 -17.14926 -16.90894 -16.58222 -15.92696 -15.85835 -15.38879 -14.82770 -14.64465 -14.17136 -14.11885 -13.90583 -13.55131 -13.31406 -13.20842 -13.11076 -13.04199 -12.87459 -12.63314 -12.42855 -12.16705 -11.68662 -11.48024 -11.16097 -11.11535 -10.99348 -10.71418 -10.71022 -10.60381 -10.47364 -10.24382 -10.13353 -9.93967 -9.71513 -9.31934 -8.98257 -8.79276 -8.40160 -7.06861 -5.82272 -3.12825 0.69211 1.35829 1.68043 1.80002 2.72740 2.78802 2.97987 3.26941 3.41691 3.47903 3.49774 3.94373 4.14623 4.15858 4.47098 4.55567 4.66684 4.79916 4.86035 4.91313 4.94444 5.11423 5.20208 5.22976 5.25891 5.37479 5.57700 5.58960 5.64392 5.76710 5.79539 5.85192 5.93266 6.00367 6.04420 6.21641 6.27621 6.43087 6.50521 6.51082 6.56880 6.62432 6.89822 7.12457 7.62209 7.68063 7.92660 8.20448 8.34920 9.47102 10.00203 10.35368 11.39750 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.002654 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.056552 B =10547.563106 C =12802.650357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.608 3.392 7 O -0.537 6.537 8 C -0.023 4.023 9 C -0.140 4.140 10 C 0.030 3.970 11 C 0.142 3.858 12 C -0.243 4.243 13 C 0.057 3.943 14 N -0.367 5.367 15 C 0.100 3.900 16 N -0.262 5.262 17 O 0.143 5.857 18 N -0.302 5.302 19 C 0.074 3.926 20 C 0.177 3.823 21 H 0.070 0.930 22 N -0.709 5.709 23 C -0.245 4.245 24 H 0.073 0.927 25 C -0.009 4.009 26 N -0.929 5.929 27 Si 0.907 3.093 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.185 0.815 37 H 0.161 0.839 38 H 0.182 0.818 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.538 -11.126 14.134 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.328 5.328 6 C 0.394 3.606 7 O -0.414 6.414 8 C -0.181 4.181 9 C -0.165 4.165 10 C -0.035 4.035 11 C -0.022 4.022 12 C -0.272 4.272 13 C -0.088 4.088 14 N -0.151 5.151 15 C -0.041 4.041 16 N -0.088 5.088 17 O 0.063 5.937 18 N 0.001 4.999 19 C -0.051 4.051 20 C 0.065 3.935 21 H 0.088 0.912 22 N -0.348 5.348 23 C -0.376 4.376 24 H 0.091 0.909 25 C -0.205 4.205 26 N -0.577 5.577 27 Si 0.738 3.262 28 H -0.204 1.204 29 H -0.219 1.219 30 H -0.218 1.218 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.202 0.798 37 H 0.178 0.822 38 H 0.199 0.801 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.221 0.779 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.726 -10.948 14.879 24.261 hybrid contribution 0.710 -0.177 -1.153 1.365 sum 16.436 -11.125 13.726 24.132 Atomic orbital electron populations 1.21596 0.93662 1.01717 1.01998 1.22682 0.96478 0.99853 0.94537 0.89740 1.22352 0.81899 0.98406 0.98109 1.48383 1.11680 1.63990 1.08781 1.16450 0.80922 0.78007 0.85212 1.90767 1.82258 1.54915 1.13492 1.23302 0.97990 1.07254 0.89517 1.22589 0.89854 1.02181 1.01857 1.20794 0.92339 1.05235 0.85120 1.18803 0.89775 1.01570 0.92024 1.21615 0.92531 1.12220 1.00854 1.22544 1.00598 1.01775 0.83840 1.48538 1.09464 1.51419 1.05687 1.21956 0.88773 1.02161 0.91196 1.77673 0.90407 1.20466 1.20279 1.84953 1.17847 1.60712 1.30226 1.74466 0.94590 1.12054 1.18804 1.23521 1.03217 1.02049 0.76350 1.21278 0.91510 0.93826 0.86929 0.91221 1.42349 1.86173 1.06187 1.00123 1.19291 1.42553 0.92618 0.83128 0.90909 1.24760 1.02345 0.95442 0.97979 1.69675 1.56178 1.02841 1.29000 0.86117 0.77202 0.78225 0.84629 1.20443 1.21853 1.21775 0.93156 0.92793 0.91249 0.90580 0.91144 0.79807 0.82173 0.80061 0.90323 0.88959 0.89009 0.90250 0.91756 0.77869 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.29 37.16 0.35 -1.53 16 2 C -0.12 -1.87 3.27 -88.48 -0.29 -2.16 16 3 H 0.08 1.45 8.01 -51.93 -0.42 1.03 16 4 C 0.11 1.77 6.38 -2.53 -0.02 1.75 16 5 N -0.60 -10.48 3.33 -171.42 -0.57 -11.05 16 6 C 0.61 11.05 7.88 -12.10 -0.10 10.95 16 7 O -0.54 -10.55 17.20 5.37 0.09 -10.46 16 8 C -0.02 -0.38 7.02 -82.62 -0.58 -0.96 16 9 C -0.14 -2.02 10.94 -38.73 -0.42 -2.45 16 10 C 0.03 0.40 7.35 -36.19 -0.27 0.14 16 11 C 0.14 1.70 7.11 -82.87 -0.59 1.11 16 12 C -0.24 -2.27 10.77 -39.67 -0.43 -2.69 16 13 C 0.06 0.39 11.46 -17.27 -0.20 0.19 16 14 N -0.37 -2.94 4.01 -68.20 -0.27 -3.21 16 15 C 0.10 0.34 11.46 59.85 0.69 1.02 16 16 N -0.26 -3.05 12.60 33.36 0.42 -2.63 16 17 O 0.14 2.12 11.20 16.06 0.18 2.30 16 18 N -0.30 -5.13 9.69 33.35 0.32 -4.80 16 19 C 0.07 1.40 5.32 -3.04 -0.02 1.39 16 20 C 0.18 3.43 3.08 -66.07 -0.20 3.22 16 21 H 0.07 1.34 7.99 -51.93 -0.41 0.93 16 22 N -0.71 -17.05 5.15 -51.63 -0.27 -17.32 16 23 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 24 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 25 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 26 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 27 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 35 H 0.07 0.99 8.03 -51.93 -0.42 0.58 16 36 H 0.18 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 38 H 0.18 0.46 8.06 -52.48 -0.42 0.04 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.08 1.68 7.57 -51.93 -0.39 1.29 16 43 H 0.06 1.23 7.79 -51.93 -0.40 0.82 16 44 H 0.39 9.97 7.76 -40.82 -0.32 9.65 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 388.21 15.07 5.85 5.85 Total: -1.00 -33.94 388.21 -6.99 -40.93 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.13 Total: 7.18 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.32 Total: 2.94 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: 0.36 Total: -65.74 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.27 Total: -8.16 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.94 -6.99 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054718910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.587 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds