Wall clock time and date at job start Wed Apr 1 2020 02:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88710 * 2 1 4 4 C 1.54904 * 111.00855 * 123.88740 * 2 1 3 5 5 N 1.47420 * 104.83635 * 155.08338 * 4 2 1 6 6 C 1.34774 * 125.64951 * 155.83786 * 5 4 2 7 7 O 1.21499 * 120.00191 * 359.97438 * 6 5 4 8 8 C 1.48349 * 120.00027 * 180.02562 * 6 5 4 9 9 C 1.41896 * 126.84161 * 179.71258 * 8 6 5 10 10 C 1.36730 * 103.81518 * 179.85205 * 9 8 6 11 11 C 1.47860 * 126.81560 * 180.08947 * 10 9 8 12 12 C 1.41042 * 126.06275 * 180.34703 * 11 10 9 13 13 C 1.35007 * 107.83999 * 179.97438 * 12 11 10 14 14 N 1.35086 * 108.03628 * 359.97438 * 13 12 11 15 15 C 1.46501 * 125.91292 * 179.97438 * 14 13 12 16 16 N 1.31818 * 126.06554 * 0.03325 * 11 10 9 17 17 O 1.34459 * 106.36363 * 0.39902 * 10 9 8 18 18 N 1.20869 * 111.73624 * 359.72418 * 17 10 9 19 19 C 1.47018 * 108.70193 * 335.87134 * 5 4 2 20 20 C 1.54371 * 107.28954 * 1.09430 * 19 5 4 21 21 H 1.09000 * 110.69938 * 263.79651 * 20 19 5 22 22 N 1.46495 * 110.75708 * 140.50781 * 20 19 5 23 23 C 1.36938 * 120.00366 * 91.48243 * 22 20 19 24 24 H 1.08001 * 119.99728 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00190 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99900 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00077 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46937 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47068 * 120.00125 * 27 25 23 30 30 H 1.48492 * 109.47553 * 240.00218 * 27 25 23 31 31 H 1.09002 * 109.47153 * 300.69429 * 1 2 3 32 32 H 1.09001 * 109.46832 * 180.69620 * 1 2 3 33 33 H 1.09004 * 109.47261 * 60.69601 * 1 2 3 34 34 H 1.09004 * 110.36628 * 273.92431 * 4 2 1 35 35 H 1.09001 * 110.36876 * 36.13074 * 4 2 1 36 36 H 1.08000 * 128.09099 * 359.95218 * 9 8 6 37 37 H 1.08002 * 126.08030 * 359.95975 * 12 11 10 38 38 H 1.08004 * 125.98028 * 180.02562 * 13 12 11 39 39 H 1.09007 * 109.46736 * 89.99848 * 15 14 13 40 40 H 1.08995 * 109.47403 * 209.99899 * 15 14 13 41 41 H 1.09002 * 109.47254 * 330.00485 * 15 14 13 42 42 H 1.09002 * 109.88343 * 120.47841 * 19 5 4 43 43 H 1.09000 * 109.88049 * 241.48392 * 19 5 4 44 44 H 0.96999 * 120.00014 * 271.47886 * 22 20 19 45 45 H 0.97000 * 119.99593 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 1.2004 5 7 3.4271 -1.2428 0.7736 6 6 4.4481 -1.5598 1.5943 7 8 4.3015 -1.4964 2.7988 8 6 5.7512 -1.9852 1.0271 9 6 6.9177 -2.3441 1.7509 10 6 7.8246 -2.6540 0.7757 11 6 9.2207 -3.0990 0.9732 12 6 10.1456 -3.4082 -0.0457 13 6 11.3045 -3.7716 0.5439 14 7 11.1337 -3.6991 1.8820 15 6 12.1448 -4.0100 2.8954 16 7 9.8236 -3.2715 2.1327 17 8 7.1969 -2.4671 -0.3986 18 7 6.0562 -2.0990 -0.2428 19 6 3.4674 -1.2743 -0.6957 20 6 2.0861 -0.8073 -1.2026 21 1 1.4468 -1.6625 -1.4217 22 7 2.2286 0.0507 -2.3815 23 6 2.1999 -0.4985 -3.6356 24 1 2.0726 -1.5643 -3.7556 25 6 2.3344 0.3145 -4.7526 26 7 2.4900 1.6133 -4.6063 27 14 2.2959 -0.4347 -6.4633 28 1 2.1119 -1.9044 -6.3560 29 1 1.1695 0.1497 -7.2345 30 1 3.5752 -0.1452 -7.1595 31 1 -0.3633 0.5246 0.8837 32 1 -0.3633 -1.0276 0.0125 33 1 -0.3634 0.5030 -0.8962 34 1 2.1560 -0.1714 2.0837 35 1 1.4509 -1.6689 1.4041 36 1 7.0562 -2.3686 2.8217 37 1 9.9598 -3.3627 -1.1087 38 1 12.2099 -4.0676 0.0349 39 1 12.7095 -3.1086 3.1338 40 1 11.6549 -4.3805 3.7958 41 1 12.8225 -4.7722 2.5107 42 1 4.2426 -0.6000 -1.0599 43 1 3.6678 -2.2891 -1.0394 44 1 2.3432 1.0078 -2.2738 45 1 2.5843 2.1814 -5.3869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054718910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:22 Heat of formation + Delta-G solvation = 113.124024 kcal Electronic energy + Delta-G solvation = -29320.458871 eV Core-core repulsion = 25150.288652 eV Total energy + Delta-G solvation = -4170.170219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -46.28543 -42.15468 -41.24118 -39.09378 -35.94649 -35.44719 -35.03802 -33.89653 -32.64127 -32.41281 -31.18373 -29.25518 -28.11006 -27.71680 -26.03093 -25.26068 -24.46726 -23.22514 -22.34621 -21.84585 -21.44367 -20.16187 -19.13666 -19.07992 -18.83547 -18.20349 -17.53629 -17.25937 -16.90093 -16.45019 -16.36432 -15.85819 -15.51745 -15.39448 -15.02772 -14.73874 -14.67643 -14.63994 -14.15571 -13.86119 -13.76430 -13.73896 -13.56786 -13.26959 -13.06752 -12.89300 -12.88124 -12.78927 -12.22901 -12.13348 -12.04995 -11.89265 -11.76679 -11.69546 -11.63354 -11.55427 -11.40372 -10.96094 -10.10614 -9.86471 -9.54544 -9.07968 -7.94643 -5.24773 -0.35658 0.12688 1.01406 1.08887 1.48982 1.50187 1.56878 1.60052 1.81625 1.94610 2.00632 2.55265 2.65341 3.11374 3.35871 3.51652 3.58139 3.69036 3.77415 3.80505 3.93051 4.08560 4.15939 4.19370 4.29588 4.41260 4.48091 4.60131 4.60676 4.61041 4.64739 4.74215 4.78326 4.84079 4.89143 4.90433 5.02929 5.11491 5.14059 5.31418 5.34279 5.47127 5.54382 6.03241 6.16166 6.26168 6.41073 6.64566 6.88063 7.33395 8.03199 8.28053 9.28417 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.002654 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.056552 B =10547.563106 C =12802.650357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 H 0.072 0.928 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.607 3.393 7 O -0.554 6.554 8 C -0.039 4.039 9 C -0.149 4.149 10 C 0.048 3.952 11 C 0.112 3.888 12 C -0.265 4.265 13 C 0.078 3.922 14 N -0.361 5.361 15 C 0.088 3.912 16 N -0.295 5.295 17 O 0.146 5.854 18 N -0.328 5.328 19 C 0.093 3.907 20 C 0.172 3.828 21 H 0.076 0.924 22 N -0.719 5.719 23 C -0.240 4.240 24 H 0.079 0.921 25 C -0.070 4.070 26 N -0.967 5.967 27 Si 0.970 3.030 28 H -0.265 1.265 29 H -0.293 1.293 30 H -0.296 1.296 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.194 0.806 37 H 0.169 0.831 38 H 0.231 0.769 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.128 0.872 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.375 0.625 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.120 -13.029 14.815 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.124 4.124 3 H 0.090 0.910 4 C -0.005 4.005 5 N -0.329 5.329 6 C 0.394 3.606 7 O -0.432 6.432 8 C -0.196 4.196 9 C -0.173 4.173 10 C -0.017 4.017 11 C -0.050 4.050 12 C -0.294 4.294 13 C -0.068 4.068 14 N -0.145 5.145 15 C -0.051 4.051 16 N -0.123 5.123 17 O 0.066 5.934 18 N -0.024 5.024 19 C -0.033 4.033 20 C 0.061 3.939 21 H 0.094 0.906 22 N -0.357 5.357 23 C -0.371 4.371 24 H 0.097 0.903 25 C -0.263 4.263 26 N -0.617 5.617 27 Si 0.799 3.201 28 H -0.189 1.189 29 H -0.221 1.221 30 H -0.223 1.223 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.211 0.789 37 H 0.186 0.814 38 H 0.247 0.753 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.146 0.854 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.208 0.792 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 17.283 -12.889 15.604 26.615 hybrid contribution 0.420 0.330 -1.240 1.351 sum 17.704 -12.559 14.364 26.029 Atomic orbital electron populations 1.21553 0.91697 1.02819 1.02230 1.22581 0.97976 0.98725 0.93132 0.90994 1.22496 0.81013 0.99239 0.97773 1.48407 1.12544 1.63925 1.08043 1.16612 0.81321 0.77647 0.85044 1.90744 1.82667 1.55801 1.14009 1.23296 0.98160 1.08167 0.89964 1.22676 0.89302 1.02929 1.02428 1.21110 0.93096 1.03365 0.84148 1.18835 0.89292 1.03557 0.93334 1.21896 0.93085 1.13280 1.01102 1.23250 1.01171 0.99128 0.83201 1.48990 1.08698 1.49610 1.07223 1.22392 0.88186 1.03906 0.90567 1.77584 0.92514 1.21584 1.20632 1.84905 1.17338 1.60309 1.30841 1.74446 0.95583 1.13286 1.19129 1.23090 1.01884 1.01050 0.77288 1.21469 0.91848 0.93944 0.86637 0.90606 1.42451 1.86338 1.06083 1.00833 1.19642 1.40390 0.92850 0.84242 0.90332 1.25524 1.03352 0.95890 1.01529 1.69822 1.58329 1.04090 1.29480 0.85130 0.76536 0.78149 0.80290 1.18923 1.22070 1.22320 0.90553 0.91325 0.93297 0.89678 0.88951 0.78872 0.81393 0.75253 0.89036 0.89171 0.85380 0.92874 0.92055 0.79225 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.29 71.98 0.67 -2.68 16 2 C -0.10 -3.30 3.27 -9.40 -0.03 -3.34 16 3 H 0.07 2.48 8.01 -2.39 -0.02 2.46 16 4 C 0.12 3.43 6.38 86.85 0.55 3.99 16 5 N -0.60 -20.98 3.33 -814.55 -2.71 -23.69 16 6 C 0.61 22.29 7.88 86.94 0.68 22.97 16 7 O -0.55 -21.74 17.20 -3.71 -0.06 -21.81 16 8 C -0.04 -1.35 7.02 42.85 0.30 -1.05 16 9 C -0.15 -4.41 10.94 22.82 0.25 -4.16 16 10 C 0.05 1.32 7.35 24.47 0.18 1.50 16 11 C 0.11 2.65 7.11 42.38 0.30 2.95 16 12 C -0.26 -4.55 10.77 22.21 0.24 -4.31 16 13 C 0.08 0.81 11.46 83.45 0.96 1.77 16 14 N -0.36 -4.88 4.01 -369.70 -1.48 -6.36 16 15 C 0.09 0.32 11.46 127.77 1.46 1.78 16 16 N -0.29 -6.64 12.60 -48.35 -0.61 -7.25 16 17 O 0.15 4.48 11.20 67.66 0.76 5.24 16 18 N -0.33 -11.50 9.69 -48.99 -0.47 -11.98 16 19 C 0.09 3.57 5.32 86.75 0.46 4.03 16 20 C 0.17 6.65 3.08 46.20 0.14 6.79 16 21 H 0.08 2.86 7.99 -2.39 -0.02 2.84 16 22 N -0.72 -35.20 5.15 -317.26 -1.63 -36.83 16 23 C -0.24 -12.93 9.96 84.03 0.84 -12.09 16 24 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 25 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 26 N -0.97 -58.50 13.06 21.65 0.28 -58.21 16 27 Si 0.97 45.69 29.55 68.60 2.03 47.71 16 28 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 29 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 30 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.64 8.13 -2.39 -0.02 1.62 16 33 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 35 H 0.09 2.37 8.03 -2.39 -0.02 2.35 16 36 H 0.19 5.18 8.06 -2.91 -0.02 5.16 16 37 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.23 -0.04 8.06 -2.91 -0.02 -0.07 16 39 H 0.09 0.15 8.14 -2.38 -0.02 0.13 16 40 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.13 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.05 2.34 7.57 -2.39 -0.02 2.32 16 43 H 0.06 2.38 7.79 -2.39 -0.02 2.36 16 44 H 0.38 19.97 7.76 -92.71 -0.72 19.25 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -75.53 388.21 3.88 -71.66 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.31 Total: 26.88 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 7.48 Total: 14.64 kcal Atomic # 7 Polarization: -137.70 SS G_CDS: -6.63 Total: -144.33 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.69 Total: -16.56 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -75.53 3.88 -71.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054718910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.781 kcal (2) G-P(sol) polarization free energy of solvation -75.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds