Wall clock time and date at job start Wed Apr 1 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.64092 * 2 1 4 4 C 1.54324 * 110.72001 * 123.14135 * 2 1 3 5 5 N 1.47020 * 107.39983 * 140.65611 * 4 2 1 6 6 C 1.34780 * 125.64983 * 181.10309 * 5 4 2 7 7 O 1.21496 * 119.99793 * 359.97438 * 6 5 4 8 8 C 1.48345 * 120.00241 * 179.97438 * 6 5 4 9 9 C 1.41891 * 126.84058 * 179.97438 * 8 6 5 10 10 C 1.36732 * 103.81502 * 180.02562 * 9 8 6 11 11 C 1.47855 * 126.81658 * 179.97438 * 10 9 8 12 12 C 1.41040 * 126.06663 * 179.71905 * 11 10 9 13 13 C 1.35008 * 107.84566 * 179.88868 * 12 11 10 14 14 N 1.35090 * 108.03330 * 0.36744 * 13 12 11 15 15 C 1.46503 * 125.91394 * 179.76507 * 14 13 12 16 16 N 1.31828 * 126.06751 * 0.02607 * 11 10 9 17 17 O 1.34450 * 106.36675 * 0.02562 * 10 9 8 18 18 N 1.20880 * 111.73342 * 359.70328 * 17 10 9 19 19 C 1.47743 * 108.53125 * 1.18235 * 5 4 2 20 20 C 1.54909 * 104.83995 * 335.74644 * 19 5 4 21 21 H 1.09006 * 111.00238 * 155.16698 * 20 19 5 22 22 N 1.46492 * 111.00777 * 279.01998 * 20 19 5 23 23 C 1.36935 * 120.00303 * 267.19534 * 22 20 19 24 24 H 1.08000 * 119.99817 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00043 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00272 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99950 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47075 * 89.99779 * 27 25 23 29 29 H 1.48499 * 109.47371 * 209.99700 * 27 25 23 30 30 H 1.48494 * 109.47331 * 329.99791 * 27 25 23 31 31 H 1.08998 * 109.46692 * 298.31216 * 1 2 3 32 32 H 1.08997 * 109.47070 * 58.30879 * 1 2 3 33 33 H 1.09002 * 109.47183 * 178.31263 * 1 2 3 34 34 H 1.09002 * 109.88322 * 260.15141 * 4 2 1 35 35 H 1.09000 * 109.88025 * 21.16306 * 4 2 1 36 36 H 1.07997 * 128.09140 * 359.97438 * 9 8 6 37 37 H 1.07998 * 126.07430 * 0.02562 * 12 11 10 38 38 H 1.07997 * 125.99054 * 180.13881 * 13 12 11 39 39 H 1.09000 * 109.46699 * 269.97599 * 15 14 13 40 40 H 1.09000 * 109.46997 * 29.97732 * 15 14 13 41 41 H 1.08997 * 109.47271 * 149.97803 * 15 14 13 42 42 H 1.09003 * 110.29227 * 216.94505 * 19 5 4 43 43 H 1.08996 * 110.53057 * 94.67717 * 19 5 4 44 44 H 0.97009 * 119.99789 * 87.19992 * 22 20 19 45 45 H 0.96996 * 120.00274 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2464 -1.5488 0.7453 6 6 3.9920 -2.3804 1.4996 7 8 3.7151 -2.5514 2.6701 8 6 5.1508 -3.0869 0.9006 9 6 6.0289 -3.9885 1.5559 10 6 6.9117 -4.3536 0.5776 11 6 8.0504 -5.2866 0.7149 12 6 8.9487 -5.6565 -0.3075 13 6 9.8421 -6.5208 0.2193 14 7 9.5281 -6.7056 1.5202 15 6 10.2409 -7.5729 2.4615 16 7 8.4029 -5.9246 1.8133 17 8 6.5392 -3.6949 -0.5338 18 7 5.5649 -3.0060 -0.3405 19 6 3.4674 -1.2455 -0.6837 20 6 2.0828 -0.7949 -1.2124 21 1 2.1887 -0.1515 -2.0859 22 7 1.2343 -1.9504 -1.5138 23 6 1.2126 -2.4725 -2.7795 24 1 1.8213 -2.0325 -3.5556 25 6 0.4081 -3.5671 -3.0651 26 7 -0.3334 -4.1036 -2.1192 27 14 0.3790 -4.2796 -4.7916 28 1 1.4227 -5.3291 -4.9116 29 1 -0.9548 -4.8751 -5.0590 30 1 0.6460 -3.2011 -5.7768 31 1 -0.3633 0.4874 0.9047 32 1 -0.3633 0.5399 -0.8744 33 1 -0.3634 -1.0272 -0.0303 34 1 2.3712 -0.0991 1.9991 35 1 1.3131 -1.4734 1.5798 36 1 6.0060 -4.3104 2.5865 37 1 8.9272 -5.3084 -1.3296 38 1 10.6618 -6.9862 -0.3077 39 1 9.8056 -8.5719 2.4361 40 1 11.2926 -7.6275 2.1801 41 1 10.1549 -7.1646 3.4684 42 1 3.8032 -2.1378 -1.2120 43 1 4.1960 -0.4426 -0.7958 44 1 0.6878 -2.3458 -0.8166 45 1 -0.8952 -4.8687 -2.3187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054718911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:34 Heat of formation + Delta-G solvation = 140.821423 kcal Electronic energy + Delta-G solvation = -29786.308270 eV Core-core repulsion = 25617.339100 eV Total energy + Delta-G solvation = -4168.969170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.96109 -41.43323 -39.68939 -37.56632 -34.43615 -34.01542 -33.72221 -32.35543 -31.51750 -30.45124 -30.42217 -27.77593 -27.09928 -26.64023 -24.21857 -23.72466 -23.34995 -22.16740 -21.28325 -21.04575 -19.23838 -18.92879 -17.85839 -17.75054 -17.38351 -16.83719 -16.37956 -15.83786 -15.77191 -15.24780 -14.73836 -14.53444 -14.14084 -14.09013 -13.90311 -13.67019 -13.25537 -13.07193 -13.00054 -12.92688 -12.83292 -12.65351 -12.15473 -11.92910 -11.80471 -11.29874 -11.09629 -11.07083 -10.89063 -10.69337 -10.63791 -10.42137 -10.33699 -10.23257 -10.01569 -9.88676 -9.61617 -9.25535 -9.00700 -8.72221 -8.27647 -7.00146 -5.79157 -3.08862 0.77267 1.47190 1.74767 1.86363 2.79557 2.87831 3.10643 3.43137 3.43988 3.48422 3.49874 4.05836 4.20096 4.23784 4.53572 4.56796 4.71753 4.87694 4.92662 4.98727 5.00564 5.21085 5.25005 5.31517 5.34565 5.44566 5.59633 5.63688 5.67622 5.81181 5.88231 5.94773 6.02644 6.09748 6.23183 6.26175 6.37889 6.41199 6.56242 6.59748 6.61489 6.82284 6.97408 7.18656 7.68510 7.77144 8.02987 8.36020 8.38280 9.50187 10.04953 10.39761 11.42923 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010874 B = 0.002951 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.383692 B = 9484.773351 C =11262.623890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.080 0.920 4 C 0.117 3.883 5 N -0.586 5.586 6 C 0.609 3.391 7 O -0.537 6.537 8 C -0.015 4.015 9 C -0.140 4.140 10 C 0.029 3.971 11 C 0.144 3.856 12 C -0.244 4.244 13 C 0.056 3.944 14 N -0.368 5.368 15 C 0.100 3.900 16 N -0.261 5.261 17 O 0.138 5.862 18 N -0.306 5.306 19 C 0.065 3.935 20 C 0.171 3.829 21 H 0.077 0.923 22 N -0.708 5.708 23 C -0.244 4.244 24 H 0.072 0.928 25 C -0.009 4.009 26 N -0.929 5.929 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.281 1.281 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.184 0.816 37 H 0.160 0.840 38 H 0.182 0.818 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.058 0.942 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.325 -1.113 6.914 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.098 0.902 4 C -0.005 4.005 5 N -0.318 5.318 6 C 0.395 3.605 7 O -0.414 6.414 8 C -0.173 4.173 9 C -0.164 4.164 10 C -0.036 4.036 11 C -0.020 4.020 12 C -0.273 4.273 13 C -0.088 4.088 14 N -0.152 5.152 15 C -0.041 4.041 16 N -0.088 5.088 17 O 0.060 5.940 18 N -0.004 5.004 19 C -0.061 4.061 20 C 0.058 3.942 21 H 0.094 0.906 22 N -0.348 5.348 23 C -0.375 4.375 24 H 0.090 0.910 25 C -0.206 4.206 26 N -0.577 5.577 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.202 0.798 37 H 0.178 0.822 38 H 0.199 0.801 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.222 0.778 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 20.522 -0.892 7.665 21.925 hybrid contribution 0.236 -1.014 -0.868 1.355 sum 20.757 -1.905 6.797 21.925 Atomic orbital electron populations 1.21607 0.93302 1.03475 1.00568 1.22557 0.97221 0.98535 0.95186 0.90174 1.22030 0.87257 0.94390 0.96853 1.48230 1.28686 1.42408 1.12467 1.16383 0.80486 0.78705 0.84890 1.90764 1.70471 1.64622 1.15576 1.23281 1.00764 1.02713 0.90515 1.22592 0.93624 0.98266 1.01908 1.20752 0.97174 0.98943 0.86695 1.18809 0.93876 0.96550 0.92795 1.21593 0.98543 1.05742 1.01385 1.22531 1.01170 0.99978 0.85143 1.48540 1.22600 1.35231 1.08785 1.21950 0.95783 0.93030 0.93306 1.77689 1.01158 1.09128 1.20794 1.84921 1.33334 1.42583 1.33209 1.74367 0.98341 1.10158 1.17505 1.23737 1.00961 1.01784 0.79600 1.21374 0.88429 0.89956 0.94394 0.90562 1.42370 1.49598 1.32437 1.10385 1.19235 1.21096 1.09793 0.87358 0.90963 1.24749 0.99469 0.98703 0.97653 1.69662 1.30810 1.25460 1.31762 0.86199 0.76863 0.79071 0.84101 1.21711 1.21828 1.20651 0.93722 0.92229 0.90929 0.91924 0.91049 0.79843 0.82246 0.80111 0.90315 0.89057 0.88969 0.88636 0.92406 0.77805 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.81 37.16 0.33 -1.81 16 2 C -0.11 -1.84 3.41 -88.78 -0.30 -2.14 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.12 2.01 6.45 -3.06 -0.02 1.99 16 5 N -0.59 -11.16 3.34 -171.19 -0.57 -11.73 16 6 C 0.61 12.21 7.88 -12.10 -0.10 12.12 16 7 O -0.54 -11.69 17.27 5.37 0.09 -11.60 16 8 C -0.01 -0.27 7.01 -82.63 -0.58 -0.85 16 9 C -0.14 -2.21 10.94 -38.73 -0.42 -2.63 16 10 C 0.03 0.42 7.35 -36.19 -0.27 0.16 16 11 C 0.14 1.84 7.11 -82.87 -0.59 1.25 16 12 C -0.24 -2.41 10.77 -39.67 -0.43 -2.83 16 13 C 0.06 0.42 11.46 -17.26 -0.20 0.22 16 14 N -0.37 -3.20 4.01 -68.21 -0.27 -3.48 16 15 C 0.10 0.40 11.46 59.85 0.69 1.09 16 16 N -0.26 -3.27 12.60 33.36 0.42 -2.85 16 17 O 0.14 2.14 11.20 16.08 0.18 2.32 16 18 N -0.31 -5.40 9.29 33.35 0.31 -5.09 16 19 C 0.06 1.20 5.90 -2.35 -0.01 1.19 16 20 C 0.17 3.29 3.47 -65.79 -0.23 3.06 16 21 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 22 N -0.71 -17.14 4.57 -51.35 -0.23 -17.37 16 23 C -0.24 -6.58 9.96 -15.06 -0.15 -6.73 16 24 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 26 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 27 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.40 6.36 -51.93 -0.33 1.07 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.33 7.82 -51.93 -0.41 0.93 16 36 H 0.18 2.67 8.06 -52.49 -0.42 2.24 16 37 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 2.01 6.24 -51.93 -0.32 1.69 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.39 10.16 6.34 -40.82 -0.26 9.90 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -34.91 383.97 -6.90 -41.81 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.94 Total: 8.42 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -2.38 Total: 3.72 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: 0.38 Total: -67.76 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.27 Total: -9.28 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.91 -6.90 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054718911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.634 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds