Wall clock time and date at job start Wed Apr 1 2020 02:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.64092 * 2 1 4 4 C 1.54324 * 110.72001 * 123.14135 * 2 1 3 5 5 N 1.47020 * 107.39983 * 140.65611 * 4 2 1 6 6 C 1.34780 * 125.64983 * 181.10309 * 5 4 2 7 7 O 1.21496 * 119.99793 * 359.97438 * 6 5 4 8 8 C 1.48345 * 120.00241 * 179.97438 * 6 5 4 9 9 C 1.41891 * 126.84058 * 179.97438 * 8 6 5 10 10 C 1.36732 * 103.81502 * 180.02562 * 9 8 6 11 11 C 1.47855 * 126.81658 * 179.97438 * 10 9 8 12 12 C 1.41040 * 126.06663 * 179.71905 * 11 10 9 13 13 C 1.35008 * 107.84566 * 179.88868 * 12 11 10 14 14 N 1.35090 * 108.03330 * 0.36744 * 13 12 11 15 15 C 1.46503 * 125.91394 * 179.76507 * 14 13 12 16 16 N 1.31828 * 126.06751 * 0.02607 * 11 10 9 17 17 O 1.34450 * 106.36675 * 0.02562 * 10 9 8 18 18 N 1.20880 * 111.73342 * 359.70328 * 17 10 9 19 19 C 1.47743 * 108.53125 * 1.18235 * 5 4 2 20 20 C 1.54909 * 104.83995 * 335.74644 * 19 5 4 21 21 H 1.09006 * 111.00238 * 155.16698 * 20 19 5 22 22 N 1.46492 * 111.00777 * 279.01998 * 20 19 5 23 23 C 1.36935 * 120.00303 * 267.19534 * 22 20 19 24 24 H 1.08000 * 119.99817 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00043 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00272 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99950 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47075 * 89.99779 * 27 25 23 29 29 H 1.48499 * 109.47371 * 209.99700 * 27 25 23 30 30 H 1.48494 * 109.47331 * 329.99791 * 27 25 23 31 31 H 1.08998 * 109.46692 * 298.31216 * 1 2 3 32 32 H 1.08997 * 109.47070 * 58.30879 * 1 2 3 33 33 H 1.09002 * 109.47183 * 178.31263 * 1 2 3 34 34 H 1.09002 * 109.88322 * 260.15141 * 4 2 1 35 35 H 1.09000 * 109.88025 * 21.16306 * 4 2 1 36 36 H 1.07997 * 128.09140 * 359.97438 * 9 8 6 37 37 H 1.07998 * 126.07430 * 0.02562 * 12 11 10 38 38 H 1.07997 * 125.99054 * 180.13881 * 13 12 11 39 39 H 1.09000 * 109.46699 * 269.97599 * 15 14 13 40 40 H 1.09000 * 109.46997 * 29.97732 * 15 14 13 41 41 H 1.08997 * 109.47271 * 149.97803 * 15 14 13 42 42 H 1.09003 * 110.29227 * 216.94505 * 19 5 4 43 43 H 1.08996 * 110.53057 * 94.67717 * 19 5 4 44 44 H 0.97009 * 119.99789 * 87.19992 * 22 20 19 45 45 H 0.96996 * 120.00274 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2464 -1.5488 0.7453 6 6 3.9920 -2.3804 1.4996 7 8 3.7151 -2.5514 2.6701 8 6 5.1508 -3.0869 0.9006 9 6 6.0289 -3.9885 1.5559 10 6 6.9117 -4.3536 0.5776 11 6 8.0504 -5.2866 0.7149 12 6 8.9487 -5.6565 -0.3075 13 6 9.8421 -6.5208 0.2193 14 7 9.5281 -6.7056 1.5202 15 6 10.2409 -7.5729 2.4615 16 7 8.4029 -5.9246 1.8133 17 8 6.5392 -3.6949 -0.5338 18 7 5.5649 -3.0060 -0.3405 19 6 3.4674 -1.2455 -0.6837 20 6 2.0828 -0.7949 -1.2124 21 1 2.1887 -0.1515 -2.0859 22 7 1.2343 -1.9504 -1.5138 23 6 1.2126 -2.4725 -2.7795 24 1 1.8213 -2.0325 -3.5556 25 6 0.4081 -3.5671 -3.0651 26 7 -0.3334 -4.1036 -2.1192 27 14 0.3790 -4.2796 -4.7916 28 1 1.4227 -5.3291 -4.9116 29 1 -0.9548 -4.8751 -5.0590 30 1 0.6460 -3.2011 -5.7768 31 1 -0.3633 0.4874 0.9047 32 1 -0.3633 0.5399 -0.8744 33 1 -0.3634 -1.0272 -0.0303 34 1 2.3712 -0.0991 1.9991 35 1 1.3131 -1.4734 1.5798 36 1 6.0060 -4.3104 2.5865 37 1 8.9272 -5.3084 -1.3296 38 1 10.6618 -6.9862 -0.3077 39 1 9.8056 -8.5719 2.4361 40 1 11.2926 -7.6275 2.1801 41 1 10.1549 -7.1646 3.4684 42 1 3.8032 -2.1378 -1.2120 43 1 4.1960 -0.4426 -0.7958 44 1 0.6878 -2.3458 -0.8166 45 1 -0.8952 -4.8687 -2.3187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054718911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:31 Heat of formation + Delta-G solvation = 117.209750 kcal Electronic energy + Delta-G solvation = -29787.332149 eV Core-core repulsion = 25617.339100 eV Total energy + Delta-G solvation = -4169.993049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -46.26188 -42.15025 -41.21083 -39.12937 -35.76559 -35.43357 -35.01344 -33.85058 -32.58634 -32.22229 -31.18075 -29.46599 -28.07380 -27.71519 -25.87921 -25.39407 -24.46820 -23.48658 -22.42069 -21.84216 -20.71983 -20.20061 -19.39360 -19.05133 -18.79722 -18.14730 -17.48235 -17.25525 -16.77652 -16.44323 -16.41411 -15.80673 -15.67288 -15.40874 -15.00944 -14.71037 -14.66907 -14.53695 -14.18772 -13.80956 -13.74943 -13.63954 -13.44892 -13.28755 -13.18252 -12.94588 -12.84094 -12.65605 -12.30406 -12.15519 -11.95638 -11.88019 -11.71329 -11.56872 -11.54612 -11.51852 -11.34998 -10.99221 -10.10074 -9.84124 -9.53925 -8.99317 -7.93577 -5.21872 -0.34540 0.14818 1.01981 1.09418 1.46910 1.48510 1.56498 1.61636 1.85582 1.97280 2.02250 2.56114 2.68039 3.15536 3.37021 3.53810 3.58886 3.70087 3.86224 3.89785 3.90831 4.07374 4.09027 4.16146 4.38243 4.47426 4.59046 4.60852 4.62492 4.66794 4.70037 4.73743 4.78219 4.84910 4.90466 4.94906 4.96529 5.16641 5.21053 5.33600 5.34764 5.53060 5.59796 6.04114 6.24576 6.27228 6.41910 6.68403 6.90615 7.34333 8.08577 8.31322 9.29732 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010874 B = 0.002951 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.383692 B = 9484.773351 C =11262.623890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.122 0.878 4 C 0.113 3.887 5 N -0.589 5.589 6 C 0.601 3.399 7 O -0.565 6.565 8 C -0.036 4.036 9 C -0.155 4.155 10 C 0.049 3.951 11 C 0.112 3.888 12 C -0.262 4.262 13 C 0.078 3.922 14 N -0.362 5.362 15 C 0.089 3.911 16 N -0.298 5.298 17 O 0.148 5.852 18 N -0.321 5.321 19 C 0.074 3.926 20 C 0.160 3.840 21 H 0.091 0.909 22 N -0.719 5.719 23 C -0.233 4.233 24 H 0.082 0.918 25 C -0.076 4.076 26 N -0.971 5.971 27 Si 0.969 3.031 28 H -0.294 1.294 29 H -0.299 1.299 30 H -0.263 1.263 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.189 0.811 37 H 0.171 0.829 38 H 0.233 0.767 39 H 0.090 0.910 40 H 0.130 0.870 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.373 0.627 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.284 -0.661 6.030 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.117 4.117 3 H 0.140 0.860 4 C -0.009 4.009 5 N -0.320 5.320 6 C 0.388 3.612 7 O -0.444 6.444 8 C -0.192 4.192 9 C -0.179 4.179 10 C -0.016 4.016 11 C -0.050 4.050 12 C -0.292 4.292 13 C -0.067 4.067 14 N -0.146 5.146 15 C -0.050 4.050 16 N -0.126 5.126 17 O 0.068 5.932 18 N -0.018 5.018 19 C -0.051 4.051 20 C 0.050 3.950 21 H 0.109 0.891 22 N -0.358 5.358 23 C -0.365 4.365 24 H 0.100 0.900 25 C -0.268 4.268 26 N -0.622 5.622 27 Si 0.798 3.202 28 H -0.221 1.221 29 H -0.226 1.226 30 H -0.188 1.188 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.206 0.794 37 H 0.189 0.811 38 H 0.249 0.751 39 H 0.108 0.892 40 H 0.148 0.852 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.206 0.794 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 23.501 -0.371 6.769 24.459 hybrid contribution -0.479 -1.212 -0.533 1.408 sum 23.022 -1.583 6.236 23.904 Atomic orbital electron populations 1.21532 0.93442 1.01295 1.02098 1.22547 0.96957 0.99744 0.92494 0.86032 1.22174 0.86280 0.94283 0.98133 1.48367 1.28831 1.42225 1.12602 1.16685 0.80981 0.78724 0.84795 1.90727 1.71447 1.65567 1.16644 1.23218 1.01030 1.03800 0.91195 1.22657 0.93977 0.98718 1.02550 1.21054 0.96995 0.97946 0.85565 1.18843 0.94372 0.97494 0.94324 1.21900 0.98777 1.06839 1.01637 1.23275 1.01017 0.98100 0.84355 1.48996 1.21249 1.34219 1.10132 1.22387 0.97490 0.92555 0.92612 1.77601 1.03230 1.10381 1.21429 1.84874 1.32625 1.42219 1.33472 1.74334 0.99103 1.11091 1.17307 1.23595 1.00946 1.01513 0.79011 1.21681 0.88086 0.88872 0.96404 0.89072 1.42525 1.50292 1.33797 1.09178 1.19653 1.19400 1.08913 0.88541 0.89990 1.25524 1.00260 0.99922 1.01108 1.69832 1.32439 1.26184 1.33696 0.85203 0.76039 0.78436 0.80501 1.22141 1.22634 1.18766 0.90921 0.91998 0.94823 0.89600 0.93324 0.79366 0.81104 0.75108 0.89189 0.85208 0.89247 0.91252 0.89408 0.79418 0.94333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 8.81 71.98 0.63 -3.30 16 2 C -0.10 -2.94 3.41 -9.60 -0.03 -2.97 16 3 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 4 C 0.11 3.82 6.45 86.73 0.56 4.38 16 5 N -0.59 -22.52 3.34 -813.81 -2.72 -25.24 16 6 C 0.60 24.85 7.88 86.93 0.68 25.53 16 7 O -0.56 -25.48 17.27 -3.70 -0.06 -25.55 16 8 C -0.04 -1.35 7.01 42.85 0.30 -1.05 16 9 C -0.15 -5.11 10.94 22.82 0.25 -4.86 16 10 C 0.05 1.47 7.35 24.47 0.18 1.65 16 11 C 0.11 2.83 7.11 42.38 0.30 3.13 16 12 C -0.26 -4.72 10.77 22.21 0.24 -4.48 16 13 C 0.08 0.88 11.46 83.45 0.96 1.84 16 14 N -0.36 -5.42 4.01 -369.70 -1.48 -6.90 16 15 C 0.09 0.45 11.46 127.77 1.46 1.91 16 16 N -0.30 -7.31 12.60 -48.35 -0.61 -7.92 16 17 O 0.15 4.65 11.20 67.73 0.76 5.41 16 18 N -0.32 -11.60 9.29 -49.00 -0.46 -12.05 16 19 C 0.07 2.71 5.90 86.79 0.51 3.22 16 20 C 0.16 5.97 3.47 46.39 0.16 6.13 16 21 H 0.09 3.15 8.09 -2.38 -0.02 3.13 16 22 N -0.72 -35.25 4.57 -316.39 -1.44 -36.70 16 23 C -0.23 -12.64 9.96 84.03 0.84 -11.81 16 24 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 25 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 26 N -0.97 -60.47 13.06 21.65 0.28 -60.19 16 27 Si 0.97 46.57 29.55 68.60 2.03 48.59 16 28 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 29 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 30 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.03 1.32 6.36 -2.39 -0.02 1.30 16 34 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.05 1.86 7.82 -2.39 -0.02 1.85 16 36 H 0.19 5.84 8.06 -2.91 -0.02 5.82 16 37 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.23 0.07 8.06 -2.91 -0.02 0.05 16 39 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.13 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.07 2.94 6.24 -2.39 -0.01 2.93 16 43 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.37 20.32 6.34 -92.70 -0.59 19.73 16 45 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -79.89 383.97 4.26 -75.63 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.45 Total: 29.50 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 7.51 Total: 15.41 kcal Atomic # 7 Polarization: -142.57 SS G_CDS: -6.42 Total: -149.00 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.69 Total: -20.14 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -79.89 4.26 -75.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054718911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.840 kcal (2) G-P(sol) polarization free energy of solvation -79.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds