Wall clock time and date at job start Wed Apr 1 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.91879 * 2 1 4 4 C 1.54907 * 111.00393 * 236.09895 * 2 1 3 5 5 N 1.47424 * 104.83596 * 204.91706 * 4 2 1 6 6 C 1.34772 * 125.64987 * 204.08954 * 5 4 2 7 7 O 1.21498 * 119.99984 * 359.97438 * 6 5 4 8 8 C 1.48345 * 120.00085 * 180.02562 * 6 5 4 9 9 C 1.41892 * 126.84511 * 180.25697 * 8 6 5 10 10 C 1.36727 * 103.81744 * 180.12311 * 9 8 6 11 11 C 1.47862 * 126.81777 * 179.90879 * 10 9 8 12 12 C 1.41040 * 126.06820 * 179.71061 * 11 10 9 13 13 C 1.35010 * 107.84300 * 180.02562 * 12 11 10 14 14 N 1.35084 * 108.03210 * 0.24177 * 13 12 11 15 15 C 1.46507 * 125.90718 * 179.75245 * 14 13 12 16 16 N 1.31818 * 126.06538 * 359.73699 * 11 10 9 17 17 O 1.34453 * 106.36553 * 359.64295 * 10 9 8 18 18 N 1.20872 * 111.73522 * 0.24547 * 17 10 9 19 19 C 1.47015 * 108.69934 * 24.35419 * 5 4 2 20 20 C 1.54332 * 107.27124 * 358.58919 * 19 5 4 21 21 H 1.09000 * 110.67440 * 96.51963 * 20 19 5 22 22 N 1.46496 * 110.85055 * 219.67533 * 20 19 5 23 23 C 1.36936 * 119.99967 * 268.68336 * 22 20 19 24 24 H 1.07995 * 119.99762 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00238 * 179.97438 * 23 22 20 26 26 N 1.31622 * 120.00248 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00114 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47236 * 60.00664 * 27 25 23 29 29 H 1.48509 * 109.47250 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47402 * 300.00102 * 27 25 23 31 31 H 1.08997 * 109.47366 * 182.44795 * 1 2 3 32 32 H 1.09005 * 109.46676 * 302.45101 * 1 2 3 33 33 H 1.09002 * 109.47385 * 62.44187 * 1 2 3 34 34 H 1.09003 * 110.36925 * 86.07630 * 4 2 1 35 35 H 1.09009 * 110.46150 * 323.80689 * 4 2 1 36 36 H 1.08008 * 128.08831 * 0.04832 * 9 8 6 37 37 H 1.08002 * 126.07577 * 0.02562 * 12 11 10 38 38 H 1.08002 * 125.97857 * 179.97438 * 13 12 11 39 39 H 1.08997 * 109.46822 * 90.00141 * 15 14 13 40 40 H 1.09001 * 109.46825 * 209.99690 * 15 14 13 41 41 H 1.08998 * 109.47486 * 330.00311 * 15 14 13 42 42 H 1.09008 * 109.88210 * 118.13060 * 19 5 4 43 43 H 1.08997 * 109.88397 * 239.29398 * 19 5 4 44 44 H 0.97000 * 120.00001 * 88.69251 * 22 20 19 45 45 H 0.96992 * 120.00763 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4475 -1.5617 -1.5941 7 8 4.3002 -1.5007 -2.7986 8 6 5.7503 -1.9879 -1.0269 9 6 6.9161 -2.3490 -1.7506 10 6 7.8232 -2.6583 -0.7754 11 6 9.2188 -3.1049 -0.9728 12 6 10.1436 -3.4146 0.0461 13 6 11.3020 -3.7796 -0.5436 14 7 11.1324 -3.7030 -1.8815 15 6 12.1453 -4.0088 -2.8949 16 7 9.8197 -3.2839 -2.1324 17 8 7.1960 -2.4699 0.3988 18 7 6.0555 -2.1009 0.2430 19 6 3.4657 -1.2794 0.6958 20 6 2.0862 -0.8080 1.2022 21 1 1.4450 -1.6614 1.4229 22 7 2.2288 0.0495 2.3814 23 6 2.2000 -0.5003 3.6352 24 1 2.0727 -1.5661 3.7547 25 6 2.3357 0.3121 4.7526 26 7 2.4914 1.6109 4.6070 27 14 2.2972 -0.4380 6.4629 28 1 3.4025 -1.4205 6.5976 29 1 2.4610 0.6341 7.4775 30 1 0.9969 -1.1237 6.6737 31 1 -0.3634 -1.0267 0.0439 32 1 -0.3633 0.5515 0.8673 33 1 -0.3634 0.4754 -0.9111 34 1 2.1559 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4044 36 1 7.0542 -2.3749 -2.8215 37 1 9.9580 -3.3679 1.1090 38 1 12.2071 -4.0763 -0.0345 39 1 12.0845 -5.0636 -3.1627 40 1 11.9690 -3.3983 -3.7806 41 1 13.1360 -3.7919 -2.4954 42 1 3.6600 -2.2965 1.0365 43 1 4.2424 -0.6086 1.0629 44 1 2.3434 1.0067 2.2740 45 1 2.5858 2.1786 5.3877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054718913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:03 Heat of formation + Delta-G solvation = 135.841038 kcal Electronic energy + Delta-G solvation = -29319.972637 eV Core-core repulsion = 25150.787501 eV Total energy + Delta-G solvation = -4169.185135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 6.06 seconds Orbital eigenvalues (eV) -45.06209 -41.49143 -39.78869 -37.59141 -34.50760 -34.16436 -33.88465 -32.47881 -31.59852 -30.68085 -30.48266 -27.55719 -27.15987 -26.79528 -24.39320 -23.70626 -23.43020 -21.99101 -21.24949 -20.99754 -19.96218 -18.97344 -17.89232 -17.83787 -17.14458 -16.90709 -16.58079 -15.92291 -15.85910 -15.38840 -14.82637 -14.64328 -14.17024 -14.12088 -13.90560 -13.53672 -13.31381 -13.20831 -13.11421 -13.04341 -12.87321 -12.62896 -12.42452 -12.17080 -11.68633 -11.47550 -11.15872 -11.11042 -10.97287 -10.71166 -10.69130 -10.60613 -10.47466 -10.27071 -10.15484 -9.95250 -9.70608 -9.31843 -8.96765 -8.79206 -8.40069 -7.06636 -5.81555 -3.12257 0.69339 1.35958 1.68099 1.80101 2.72905 2.78881 2.98175 3.27057 3.43039 3.47737 3.48333 3.94520 4.14770 4.15990 4.47231 4.55957 4.66612 4.79974 4.86133 4.91360 4.94497 5.11469 5.20498 5.23251 5.26012 5.37584 5.57794 5.59110 5.64613 5.76743 5.79609 5.85707 5.93229 6.00447 6.04506 6.21546 6.28139 6.43222 6.50732 6.51310 6.57145 6.62323 6.90029 7.12569 7.62182 7.67541 7.92804 8.20589 8.35589 9.47561 10.00677 10.35908 11.40327 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011062 B = 0.002655 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.540083 B =10545.548286 C =12800.947317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.608 3.392 7 O -0.538 6.538 8 C -0.023 4.023 9 C -0.141 4.141 10 C 0.030 3.970 11 C 0.142 3.858 12 C -0.243 4.243 13 C 0.057 3.943 14 N -0.367 5.367 15 C 0.100 3.900 16 N -0.262 5.262 17 O 0.143 5.857 18 N -0.302 5.302 19 C 0.074 3.926 20 C 0.177 3.823 21 H 0.069 0.931 22 N -0.709 5.709 23 C -0.247 4.247 24 H 0.072 0.928 25 C -0.008 4.008 26 N -0.930 5.930 27 Si 0.908 3.092 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.285 1.285 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.185 0.815 37 H 0.161 0.839 38 H 0.182 0.818 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.587 -10.934 -14.094 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.328 5.328 6 C 0.394 3.606 7 O -0.414 6.414 8 C -0.181 4.181 9 C -0.165 4.165 10 C -0.035 4.035 11 C -0.022 4.022 12 C -0.272 4.272 13 C -0.088 4.088 14 N -0.151 5.151 15 C -0.041 4.041 16 N -0.088 5.088 17 O 0.063 5.937 18 N 0.001 4.999 19 C -0.051 4.051 20 C 0.064 3.936 21 H 0.087 0.913 22 N -0.348 5.348 23 C -0.377 4.377 24 H 0.090 0.910 25 C -0.204 4.204 26 N -0.577 5.577 27 Si 0.738 3.262 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.212 1.212 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.202 0.798 37 H 0.178 0.822 38 H 0.199 0.801 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.221 0.779 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.777 -10.740 -14.832 24.171 hybrid contribution 0.696 -0.233 1.151 1.365 sum 16.473 -10.973 -13.681 24.061 Atomic orbital electron populations 1.21592 0.93655 1.01875 1.01815 1.22677 0.96472 0.99842 0.94524 0.89733 1.22355 0.81889 0.98413 0.98109 1.48386 1.11720 1.63950 1.08783 1.16448 0.80934 0.77995 0.85211 1.90767 1.82246 1.54935 1.13490 1.23301 0.98004 1.07243 0.89518 1.22588 0.89862 1.02178 1.01856 1.20792 0.92345 1.05230 0.85122 1.18802 0.89819 1.01532 0.92018 1.21616 0.92631 1.12117 1.00856 1.22544 1.00683 1.01689 0.83846 1.48538 1.09306 1.51570 1.05692 1.21956 0.88345 1.02592 0.91190 1.77670 0.90318 1.20565 1.20274 1.84954 1.17875 1.60683 1.30226 1.74470 0.94590 1.12047 1.18802 1.23512 1.03243 1.02013 0.76361 1.21281 0.91538 0.93812 0.86938 0.91261 1.42333 1.86213 1.06173 1.00093 1.19197 1.42824 0.92563 0.83162 0.91026 1.24755 1.02293 0.95437 0.97961 1.69648 1.56005 1.02843 1.29241 0.86265 0.77905 0.77842 0.84144 1.21083 1.21695 1.21196 0.92758 0.91309 0.93162 0.90576 0.91155 0.79806 0.82174 0.80060 0.90345 0.88948 0.89002 0.91768 0.90212 0.77873 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.29 37.16 0.35 -1.53 16 2 C -0.12 -1.87 3.27 -88.47 -0.29 -2.16 16 3 H 0.08 1.45 8.01 -51.93 -0.42 1.04 16 4 C 0.11 1.77 6.37 -2.53 -0.02 1.76 16 5 N -0.60 -10.49 3.33 -171.44 -0.57 -11.06 16 6 C 0.61 11.06 7.88 -12.10 -0.10 10.96 16 7 O -0.54 -10.56 17.20 5.37 0.09 -10.47 16 8 C -0.02 -0.38 7.02 -82.62 -0.58 -0.96 16 9 C -0.14 -2.02 10.94 -38.73 -0.42 -2.45 16 10 C 0.03 0.40 7.35 -36.19 -0.27 0.14 16 11 C 0.14 1.70 7.11 -82.87 -0.59 1.12 16 12 C -0.24 -2.27 10.77 -39.67 -0.43 -2.70 16 13 C 0.06 0.39 11.46 -17.27 -0.20 0.19 16 14 N -0.37 -2.94 4.01 -68.20 -0.27 -3.22 16 15 C 0.10 0.34 11.46 59.85 0.69 1.02 16 16 N -0.26 -3.05 12.60 33.36 0.42 -2.63 16 17 O 0.14 2.12 11.20 16.08 0.18 2.30 16 18 N -0.30 -5.14 9.70 33.35 0.32 -4.81 16 19 C 0.07 1.41 5.32 -3.06 -0.02 1.39 16 20 C 0.18 3.43 3.08 -66.09 -0.20 3.22 16 21 H 0.07 1.34 7.96 -51.93 -0.41 0.93 16 22 N -0.71 -17.07 5.15 -51.65 -0.27 -17.33 16 23 C -0.25 -6.61 9.96 -15.06 -0.15 -6.76 16 24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 25 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 26 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 27 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 31 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 35 H 0.07 0.99 8.04 -51.92 -0.42 0.58 16 36 H 0.18 2.39 8.06 -52.48 -0.42 1.97 16 37 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 42 H 0.06 1.22 7.81 -51.92 -0.41 0.82 16 43 H 0.08 1.69 7.55 -51.93 -0.39 1.30 16 44 H 0.39 9.98 7.76 -40.82 -0.32 9.66 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 388.19 15.07 5.85 5.85 Total: -1.00 -33.91 388.19 -6.99 -40.90 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.13 Total: 7.29 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -2.32 Total: 2.93 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: 0.36 Total: -65.80 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.27 Total: -8.16 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.91 -6.99 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054718913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.741 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.06 seconds