Wall clock time and date at job start Wed Apr 1 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.91879 * 2 1 4 4 C 1.54907 * 111.00393 * 236.09895 * 2 1 3 5 5 N 1.47424 * 104.83596 * 204.91706 * 4 2 1 6 6 C 1.34772 * 125.64987 * 204.08954 * 5 4 2 7 7 O 1.21498 * 119.99984 * 359.97438 * 6 5 4 8 8 C 1.48345 * 120.00085 * 180.02562 * 6 5 4 9 9 C 1.41892 * 126.84511 * 180.25697 * 8 6 5 10 10 C 1.36727 * 103.81744 * 180.12311 * 9 8 6 11 11 C 1.47862 * 126.81777 * 179.90879 * 10 9 8 12 12 C 1.41040 * 126.06820 * 179.71061 * 11 10 9 13 13 C 1.35010 * 107.84300 * 180.02562 * 12 11 10 14 14 N 1.35084 * 108.03210 * 0.24177 * 13 12 11 15 15 C 1.46507 * 125.90718 * 179.75245 * 14 13 12 16 16 N 1.31818 * 126.06538 * 359.73699 * 11 10 9 17 17 O 1.34453 * 106.36553 * 359.64295 * 10 9 8 18 18 N 1.20872 * 111.73522 * 0.24547 * 17 10 9 19 19 C 1.47015 * 108.69934 * 24.35419 * 5 4 2 20 20 C 1.54332 * 107.27124 * 358.58919 * 19 5 4 21 21 H 1.09000 * 110.67440 * 96.51963 * 20 19 5 22 22 N 1.46496 * 110.85055 * 219.67533 * 20 19 5 23 23 C 1.36936 * 119.99967 * 268.68336 * 22 20 19 24 24 H 1.07995 * 119.99762 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00238 * 179.97438 * 23 22 20 26 26 N 1.31622 * 120.00248 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00114 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47236 * 60.00664 * 27 25 23 29 29 H 1.48509 * 109.47250 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47402 * 300.00102 * 27 25 23 31 31 H 1.08997 * 109.47366 * 182.44795 * 1 2 3 32 32 H 1.09005 * 109.46676 * 302.45101 * 1 2 3 33 33 H 1.09002 * 109.47385 * 62.44187 * 1 2 3 34 34 H 1.09003 * 110.36925 * 86.07630 * 4 2 1 35 35 H 1.09009 * 110.46150 * 323.80689 * 4 2 1 36 36 H 1.08008 * 128.08831 * 0.04832 * 9 8 6 37 37 H 1.08002 * 126.07577 * 0.02562 * 12 11 10 38 38 H 1.08002 * 125.97857 * 179.97438 * 13 12 11 39 39 H 1.08997 * 109.46822 * 90.00141 * 15 14 13 40 40 H 1.09001 * 109.46825 * 209.99690 * 15 14 13 41 41 H 1.08998 * 109.47486 * 330.00311 * 15 14 13 42 42 H 1.09008 * 109.88210 * 118.13060 * 19 5 4 43 43 H 1.08997 * 109.88397 * 239.29398 * 19 5 4 44 44 H 0.97000 * 120.00001 * 88.69251 * 22 20 19 45 45 H 0.96992 * 120.00763 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4475 -1.5617 -1.5941 7 8 4.3002 -1.5007 -2.7986 8 6 5.7503 -1.9879 -1.0269 9 6 6.9161 -2.3490 -1.7506 10 6 7.8232 -2.6583 -0.7754 11 6 9.2188 -3.1049 -0.9728 12 6 10.1436 -3.4146 0.0461 13 6 11.3020 -3.7796 -0.5436 14 7 11.1324 -3.7030 -1.8815 15 6 12.1453 -4.0088 -2.8949 16 7 9.8197 -3.2839 -2.1324 17 8 7.1960 -2.4699 0.3988 18 7 6.0555 -2.1009 0.2430 19 6 3.4657 -1.2794 0.6958 20 6 2.0862 -0.8080 1.2022 21 1 1.4450 -1.6614 1.4229 22 7 2.2288 0.0495 2.3814 23 6 2.2000 -0.5003 3.6352 24 1 2.0727 -1.5661 3.7547 25 6 2.3357 0.3121 4.7526 26 7 2.4914 1.6109 4.6070 27 14 2.2972 -0.4380 6.4629 28 1 3.4025 -1.4205 6.5976 29 1 2.4610 0.6341 7.4775 30 1 0.9969 -1.1237 6.6737 31 1 -0.3634 -1.0267 0.0439 32 1 -0.3633 0.5515 0.8673 33 1 -0.3634 0.4754 -0.9111 34 1 2.1559 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4044 36 1 7.0542 -2.3749 -2.8215 37 1 9.9580 -3.3679 1.1090 38 1 12.2071 -4.0763 -0.0345 39 1 12.0845 -5.0636 -3.1627 40 1 11.9690 -3.3983 -3.7806 41 1 13.1360 -3.7919 -2.4954 42 1 3.6600 -2.2965 1.0365 43 1 4.2424 -0.6086 1.0629 44 1 2.3434 1.0067 2.2740 45 1 2.5858 2.1786 5.3877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054718913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:57 Heat of formation + Delta-G solvation = 113.335430 kcal Electronic energy + Delta-G solvation = -29320.948553 eV Core-core repulsion = 25150.787501 eV Total energy + Delta-G solvation = -4170.161052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.37 seconds Orbital eigenvalues (eV) -46.28613 -42.15586 -41.24187 -39.09351 -35.94282 -35.44752 -35.03829 -33.89637 -32.64075 -32.41252 -31.18408 -29.25491 -28.11130 -27.71753 -26.02816 -25.25943 -24.46759 -23.22330 -22.34485 -21.84633 -21.44551 -20.16157 -19.13170 -19.08026 -18.83593 -18.20337 -17.53429 -17.25921 -16.90078 -16.45120 -16.36625 -15.85920 -15.52279 -15.37720 -15.02874 -14.74229 -14.67713 -14.64028 -14.14966 -13.85491 -13.77246 -13.73424 -13.57455 -13.27143 -13.06914 -12.88487 -12.81992 -12.78993 -12.24479 -12.18937 -12.06288 -11.89296 -11.76587 -11.69462 -11.63398 -11.55413 -11.40726 -10.93582 -10.10646 -9.86533 -9.54598 -9.07720 -7.93990 -5.24294 -0.35697 0.12665 1.01336 1.08882 1.49460 1.52115 1.56647 1.58515 1.81563 1.94656 2.00518 2.55727 2.65360 3.11331 3.36043 3.51595 3.58091 3.69000 3.77476 3.80472 3.93017 4.08521 4.15869 4.19668 4.29723 4.41281 4.48194 4.59983 4.60574 4.61016 4.64723 4.74192 4.78285 4.83822 4.89056 4.90355 5.02771 5.11524 5.14438 5.31407 5.34213 5.46965 5.53977 6.03180 6.16148 6.26367 6.41055 6.64541 6.88034 7.33667 8.03611 8.28558 9.28628 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011062 B = 0.002655 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.540083 B =10545.548286 C =12800.947317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 H 0.072 0.928 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.607 3.393 7 O -0.554 6.554 8 C -0.039 4.039 9 C -0.149 4.149 10 C 0.048 3.952 11 C 0.112 3.888 12 C -0.265 4.265 13 C 0.078 3.922 14 N -0.361 5.361 15 C 0.089 3.911 16 N -0.295 5.295 17 O 0.146 5.854 18 N -0.328 5.328 19 C 0.093 3.907 20 C 0.172 3.828 21 H 0.075 0.925 22 N -0.719 5.719 23 C -0.243 4.243 24 H 0.078 0.922 25 C -0.070 4.070 26 N -0.967 5.967 27 Si 0.970 3.030 28 H -0.279 1.279 29 H -0.297 1.297 30 H -0.276 1.276 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.194 0.806 37 H 0.168 0.832 38 H 0.231 0.769 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.127 0.873 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.375 0.625 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.177 -12.784 -14.755 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.124 4.124 3 H 0.090 0.910 4 C -0.005 4.005 5 N -0.329 5.329 6 C 0.394 3.606 7 O -0.432 6.432 8 C -0.196 4.196 9 C -0.173 4.173 10 C -0.017 4.017 11 C -0.050 4.050 12 C -0.294 4.294 13 C -0.068 4.068 14 N -0.145 5.145 15 C -0.050 4.050 16 N -0.123 5.123 17 O 0.066 5.934 18 N -0.025 5.025 19 C -0.033 4.033 20 C 0.061 3.939 21 H 0.093 0.907 22 N -0.357 5.357 23 C -0.374 4.374 24 H 0.096 0.904 25 C -0.262 4.262 26 N -0.617 5.617 27 Si 0.799 3.201 28 H -0.205 1.205 29 H -0.224 1.224 30 H -0.202 1.202 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.211 0.789 37 H 0.186 0.814 38 H 0.247 0.753 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.146 0.854 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.208 0.792 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 17.342 -12.628 -15.536 26.488 hybrid contribution 0.403 0.251 1.232 1.320 sum 17.745 -12.378 -14.305 25.937 Atomic orbital electron populations 1.21550 0.91695 1.02752 1.02274 1.22577 0.97967 0.98719 0.93115 0.90975 1.22499 0.80996 0.99244 0.97779 1.48410 1.12587 1.63886 1.08042 1.16609 0.81332 0.77637 0.85044 1.90744 1.82654 1.55818 1.14003 1.23297 0.98177 1.08149 0.89962 1.22676 0.89306 1.02921 1.02430 1.21109 0.93103 1.03360 0.84148 1.18833 0.89335 1.03521 0.93330 1.21896 0.93194 1.13176 1.01100 1.23250 1.01267 0.99028 0.83205 1.48990 1.08521 1.49779 1.07227 1.22392 0.88630 1.03459 0.90567 1.77582 0.92399 1.21706 1.20622 1.84905 1.17368 1.60284 1.30847 1.74450 0.95585 1.13289 1.19135 1.23080 1.01903 1.01019 0.77301 1.21472 0.91872 0.93929 0.86652 0.90664 1.42435 1.86391 1.06065 1.00806 1.19568 1.40718 0.92847 0.84284 0.90381 1.25525 1.03266 0.95881 1.01538 1.69803 1.58158 1.04083 1.29647 0.85269 0.78215 0.76855 0.79765 1.20521 1.22384 1.20191 0.91433 0.93294 0.90475 0.89657 0.88978 0.78863 0.81403 0.75251 0.88917 0.89226 0.85439 0.92068 0.92843 0.79232 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.29 71.98 0.67 -2.68 16 2 C -0.10 -3.30 3.27 -9.40 -0.03 -3.33 16 3 H 0.07 2.49 8.01 -2.39 -0.02 2.47 16 4 C 0.12 3.44 6.37 86.85 0.55 3.99 16 5 N -0.60 -21.01 3.33 -814.61 -2.71 -23.72 16 6 C 0.61 22.31 7.88 86.94 0.68 23.00 16 7 O -0.55 -21.75 17.20 -3.71 -0.06 -21.82 16 8 C -0.04 -1.35 7.02 42.85 0.30 -1.05 16 9 C -0.15 -4.41 10.94 22.82 0.25 -4.16 16 10 C 0.05 1.32 7.35 24.47 0.18 1.50 16 11 C 0.11 2.65 7.11 42.38 0.30 2.95 16 12 C -0.26 -4.57 10.77 22.21 0.24 -4.33 16 13 C 0.08 0.81 11.46 83.45 0.96 1.77 16 14 N -0.36 -4.89 4.01 -369.69 -1.48 -6.37 16 15 C 0.09 0.32 11.46 127.77 1.46 1.79 16 16 N -0.29 -6.64 12.60 -48.35 -0.61 -7.25 16 17 O 0.15 4.49 11.20 67.72 0.76 5.25 16 18 N -0.33 -11.54 9.70 -48.99 -0.48 -12.01 16 19 C 0.09 3.58 5.32 86.73 0.46 4.04 16 20 C 0.17 6.65 3.08 46.18 0.14 6.80 16 21 H 0.08 2.85 7.96 -2.39 -0.02 2.83 16 22 N -0.72 -35.26 5.15 -317.32 -1.64 -36.90 16 23 C -0.24 -13.11 9.96 84.03 0.84 -12.27 16 24 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 25 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 26 N -0.97 -58.49 13.06 21.65 0.28 -58.21 16 27 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 28 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 29 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 30 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 31 H 0.07 1.63 8.11 -2.39 -0.02 1.61 16 32 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 2.42 8.04 -2.39 -0.02 2.40 16 35 H 0.09 2.37 8.04 -2.38 -0.02 2.35 16 36 H 0.19 5.19 8.06 -2.91 -0.02 5.16 16 37 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.23 -0.04 8.06 -2.91 -0.02 -0.06 16 39 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.13 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.06 2.38 7.81 -2.38 -0.02 2.36 16 43 H 0.05 2.36 7.55 -2.39 -0.02 2.34 16 44 H 0.38 19.99 7.76 -92.71 -0.72 19.27 16 45 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -75.47 388.19 3.88 -71.59 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.31 Total: 27.22 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 7.48 Total: 14.55 kcal Atomic # 7 Polarization: -137.84 SS G_CDS: -6.63 Total: -144.46 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.69 Total: -16.57 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -75.47 3.88 -71.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054718913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.929 kcal (2) G-P(sol) polarization free energy of solvation -75.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.37 seconds