Wall clock time and date at job start Wed Apr 1 2020 02:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 110.78443 * 2 1 4 4 C 1.54330 * 110.71871 * 123.24157 * 2 1 3 5 5 N 1.47021 * 107.27156 * 140.55016 * 4 2 1 6 6 C 1.34778 * 125.64832 * 181.10330 * 5 4 2 7 7 O 1.21543 * 119.99690 * 354.24717 * 6 5 4 8 8 C 1.47907 * 119.99939 * 174.24447 * 6 5 4 9 9 C 1.39613 * 121.00891 * 306.80469 * 8 6 5 10 10 C 1.39076 * 119.22875 * 179.83771 * 9 8 6 11 11 O 1.35738 * 119.26996 * 180.20042 * 10 9 8 12 12 N 1.31867 * 121.45704 * 0.42028 * 10 9 8 13 13 C 1.33082 * 121.82919 * 359.80015 * 12 10 9 14 14 N 1.35730 * 133.20815 * 179.97438 * 13 12 10 15 15 C 1.30201 * 109.67978 * 180.02562 * 14 13 12 16 16 N 1.35972 * 110.07953 * 0.02562 * 15 14 13 17 17 C 1.46493 * 126.36359 * 180.02562 * 16 15 14 18 18 C 1.37610 * 107.26863 * 359.97438 * 16 15 14 19 19 C 1.47426 * 108.70418 * 1.05872 * 5 4 2 20 20 C 1.54905 * 104.83157 * 335.87364 * 19 5 4 21 21 H 1.09007 * 111.00003 * 278.92886 * 20 19 5 22 22 N 1.46505 * 111.00451 * 155.08467 * 20 19 5 23 23 C 1.36939 * 120.00076 * 92.80292 * 22 20 19 24 24 H 1.07999 * 120.00115 * 359.97438 * 23 22 20 25 25 C 1.38814 * 119.99613 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00375 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99614 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47210 * 89.99891 * 27 25 23 29 29 H 1.48507 * 109.46932 * 210.00004 * 27 25 23 30 30 H 1.48500 * 109.46908 * 329.99571 * 27 25 23 31 31 H 1.08995 * 109.47809 * 183.23649 * 1 2 3 32 32 H 1.09004 * 109.47397 * 303.24172 * 1 2 3 33 33 H 1.09000 * 109.47017 * 63.23711 * 1 2 3 34 34 H 1.08993 * 109.88202 * 259.96938 * 4 2 1 35 35 H 1.09004 * 109.88053 * 21.13706 * 4 2 1 36 36 H 1.07993 * 120.38316 * 0.02562 * 9 8 6 37 37 H 0.96701 * 113.99559 * 270.21408 * 11 10 9 38 38 H 1.08002 * 124.95963 * 180.02562 * 15 14 13 39 39 H 1.08998 * 109.47661 * 274.11908 * 17 16 15 40 40 H 1.08996 * 109.47592 * 34.12279 * 17 16 15 41 41 H 1.09001 * 109.46932 * 154.12453 * 17 16 15 42 42 H 1.09001 * 110.36981 * 217.03048 * 19 5 4 43 43 H 1.09009 * 110.45754 * 94.75352 * 19 5 4 44 44 H 0.96997 * 119.99737 * 272.79749 * 22 20 19 45 45 H 0.97000 * 119.99916 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0759 -0.7913 1.2073 5 7 3.2443 -1.5509 0.7390 6 6 3.9912 -2.3850 1.4893 7 8 3.7828 -2.4797 2.6830 8 6 5.0642 -3.1852 0.8601 9 6 4.8031 -3.9936 -0.2478 10 6 5.8406 -4.7279 -0.8123 11 8 5.5886 -5.5109 -1.8921 12 7 7.0628 -4.6835 -0.3192 13 6 7.3665 -3.9338 0.7376 14 7 8.5175 -3.7174 1.4236 15 6 8.2964 -2.8839 2.3991 16 7 6.9893 -2.5094 2.4060 17 6 6.3558 -1.5845 3.3490 18 6 6.3726 -3.1597 1.3618 19 6 3.4631 -1.2500 -0.6875 20 6 2.0789 -0.7955 -1.2137 21 1 1.4450 -1.6537 -1.4375 22 7 2.2214 0.0695 -2.3875 23 6 2.1866 -0.4714 -3.6451 24 1 2.0545 -1.5358 -3.7716 25 6 2.3222 0.3482 -4.7571 26 7 2.4838 1.6453 -4.6030 27 14 2.2755 -0.3898 -6.4725 28 1 0.8748 -0.4080 -6.9656 29 1 3.1115 0.4291 -7.3867 30 1 2.8030 -1.7773 -6.4290 31 1 -0.3634 -1.0259 0.0580 32 1 -0.3634 0.5633 0.8595 33 1 -0.3633 0.4628 -0.9176 34 1 2.3740 -0.1026 1.9977 35 1 1.3128 -1.4759 1.5775 36 1 3.8078 -4.0457 -0.6635 37 1 5.3242 -6.4141 -1.6697 38 1 9.0424 -2.5403 3.1005 39 1 6.0416 -2.1308 4.2383 40 1 7.0679 -0.8092 3.6315 41 1 5.4863 -1.1253 2.8787 42 1 3.7958 -2.1429 -1.2170 43 1 4.1935 -0.4487 -0.8002 44 1 2.3404 1.0254 -2.2739 45 1 2.5782 2.2181 -5.3801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054726777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:17 Heat of formation + Delta-G solvation = 46.157990 kcal Electronic energy + Delta-G solvation = -30835.508052 eV Core-core repulsion = 26662.433967 eV Total energy + Delta-G solvation = -4173.074084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 6.22 seconds Orbital eigenvalues (eV) -42.67437 -40.18352 -39.29725 -37.82689 -36.39162 -34.50628 -34.23639 -32.93318 -31.92816 -30.80067 -29.42213 -27.74365 -27.40502 -26.64539 -24.72496 -23.92895 -23.18628 -22.17797 -21.23531 -20.07762 -19.64706 -18.67512 -18.18030 -17.46398 -17.20803 -17.11322 -16.28926 -15.97623 -15.88856 -15.30628 -14.88117 -14.74998 -14.38992 -14.14875 -13.91682 -13.71502 -13.51008 -13.26679 -13.21060 -13.04161 -12.86320 -12.32618 -12.05974 -11.98762 -11.92590 -11.74304 -11.19323 -11.19060 -10.99680 -10.90798 -10.78621 -10.72666 -10.41959 -10.30440 -10.05914 -9.82046 -9.34683 -9.11590 -8.92875 -8.63785 -8.58898 -7.17360 -5.91333 -3.22862 0.28865 0.91784 2.14170 2.23462 2.56899 2.86441 3.10475 3.37488 3.44402 3.45169 3.54274 4.02192 4.10935 4.31817 4.43166 4.49952 4.67327 4.77717 4.89107 4.94788 4.98267 5.05470 5.08189 5.27261 5.42052 5.44078 5.52405 5.55964 5.60085 5.68119 5.77852 5.83419 5.89409 6.07127 6.07675 6.11637 6.19734 6.31359 6.33177 6.50176 6.67467 6.72149 7.21125 7.42000 7.47249 7.58481 7.81091 7.90949 8.25452 9.38184 9.89302 10.23950 11.30312 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010264 B = 0.003760 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.320338 B = 7444.834143 C = 9022.333460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.085 0.915 4 C 0.117 3.883 5 N -0.599 5.599 6 C 0.570 3.430 7 O -0.540 6.540 8 C -0.044 4.044 9 C -0.135 4.135 10 C 0.333 3.667 11 O -0.470 6.470 12 N -0.454 5.454 13 C 0.272 3.728 14 N -0.485 5.485 15 C 0.288 3.712 16 N -0.480 5.480 17 C 0.079 3.921 18 C 0.024 3.976 19 C 0.061 3.939 20 C 0.179 3.821 21 H 0.071 0.929 22 N -0.707 5.707 23 C -0.252 4.252 24 H 0.074 0.926 25 C -0.005 4.005 26 N -0.929 5.929 27 Si 0.907 3.093 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.159 0.841 37 H 0.401 0.599 38 H 0.226 0.774 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 -7.326 17.035 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.006 4.006 5 N -0.331 5.331 6 C 0.358 3.642 7 O -0.420 6.420 8 C -0.058 4.058 9 C -0.158 4.158 10 C 0.142 3.858 11 O -0.276 6.276 12 N -0.175 5.175 13 C 0.029 3.971 14 N -0.205 5.205 15 C 0.000 4.000 16 N -0.169 5.169 17 C -0.063 4.063 18 C -0.091 4.091 19 C -0.064 4.064 20 C 0.066 3.934 21 H 0.089 0.911 22 N -0.346 5.346 23 C -0.382 4.382 24 H 0.092 0.908 25 C -0.202 4.202 26 N -0.576 5.576 27 Si 0.737 3.263 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.176 0.824 37 H 0.259 0.741 38 H 0.242 0.758 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.222 0.778 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.202 -7.769 16.670 19.113 hybrid contribution -1.261 0.453 -0.224 1.358 sum 3.942 -7.317 16.446 18.426 Atomic orbital electron populations 1.21657 0.93677 1.01603 1.02203 1.22556 0.96687 0.99864 0.94439 0.89671 1.22080 0.86841 0.94462 0.97208 1.48495 1.29224 1.42402 1.12953 1.17692 0.81178 0.79540 0.85826 1.90778 1.70002 1.67169 1.14005 1.18989 0.90824 0.99556 0.96417 1.22107 1.01367 0.98346 0.93991 1.18483 0.86282 0.93677 0.87369 1.84906 1.88903 1.26966 1.26798 1.65853 1.21761 1.20404 1.09483 1.18875 0.89139 0.95760 0.93279 1.70366 1.24469 1.18250 1.07436 1.25644 0.84391 0.92999 0.96944 1.45129 1.09389 1.37523 1.24859 1.22219 0.99374 0.92132 0.92536 1.19425 0.95033 1.00713 0.93900 1.23839 1.03171 1.01466 0.77943 1.21348 0.91409 0.93863 0.86753 0.91092 1.42291 1.86016 1.06219 1.00119 1.19239 1.43251 0.92773 0.82987 0.90847 1.24758 1.01915 0.95412 0.98066 1.69653 1.55651 1.02788 1.29465 0.86202 0.77499 0.78295 0.84289 1.21545 1.21672 1.20427 0.92835 0.93178 0.91147 0.91687 0.91161 0.82366 0.74145 0.75756 0.89769 0.89366 0.89197 0.90502 0.91036 0.77838 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.16 37.15 0.34 -1.37 16 2 C -0.12 -1.63 3.20 -88.78 -0.28 -1.91 16 3 H 0.08 1.25 8.00 -51.93 -0.42 0.84 16 4 C 0.12 1.52 6.47 -3.06 -0.02 1.50 16 5 N -0.60 -8.61 3.33 -171.60 -0.57 -9.18 16 6 C 0.57 8.43 6.05 -12.30 -0.07 8.35 16 7 O -0.54 -8.63 15.20 5.33 0.08 -8.55 16 8 C -0.04 -0.64 5.22 -104.71 -0.55 -1.19 16 9 C -0.13 -1.84 8.01 -38.76 -0.31 -2.15 16 10 C 0.33 4.80 7.71 -17.23 -0.13 4.67 16 11 O -0.47 -5.81 13.55 -18.92 -0.26 -6.06 16 12 N -0.45 -7.53 10.41 -12.77 -0.13 -7.66 16 13 C 0.27 4.37 8.37 -156.98 -1.31 3.06 16 14 N -0.48 -6.99 11.27 -13.59 -0.15 -7.14 16 15 C 0.29 2.89 12.50 -89.77 -1.12 1.76 16 16 N -0.48 -5.49 3.19 -122.89 -0.39 -5.89 16 17 C 0.08 0.69 9.99 59.84 0.60 1.29 16 18 C 0.02 0.35 6.81 -83.67 -0.57 -0.22 16 19 C 0.06 0.99 6.38 -2.53 -0.02 0.98 16 20 C 0.18 3.10 3.16 -65.78 -0.21 2.89 16 21 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16 22 N -0.71 -15.83 5.24 -51.35 -0.27 -16.10 16 23 C -0.25 -6.43 9.96 -15.06 -0.15 -6.58 16 24 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 25 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 26 N -0.93 -26.51 13.06 55.49 0.72 -25.78 16 27 Si 0.91 21.47 29.55 -169.99 -5.02 16.44 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 31 H 0.05 0.64 8.06 -51.93 -0.42 0.22 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.87 7.77 -51.93 -0.40 0.47 16 36 H 0.16 1.90 7.35 -52.49 -0.39 1.52 16 37 H 0.40 2.63 9.06 45.56 0.41 3.05 16 38 H 0.23 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 1.00 5.59 -51.93 -0.29 0.71 16 42 H 0.08 1.26 5.41 -51.93 -0.28 0.98 16 43 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 44 H 0.39 9.31 7.76 -40.82 -0.32 8.99 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 374.67 15.07 5.65 5.65 Total: -1.00 -34.60 374.67 -9.27 -43.87 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.02 Total: 9.55 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: -3.90 Total: 10.85 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -0.79 Total: -71.75 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.18 Total: -14.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.60 -9.27 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054726777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.027 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.22 seconds