Wall clock time and date at job start Wed Apr 1 2020 02:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 110.78443 * 2 1 4 4 C 1.54330 * 110.71871 * 123.24157 * 2 1 3 5 5 N 1.47021 * 107.27156 * 140.55016 * 4 2 1 6 6 C 1.34778 * 125.64832 * 181.10330 * 5 4 2 7 7 O 1.21543 * 119.99690 * 354.24717 * 6 5 4 8 8 C 1.47907 * 119.99939 * 174.24447 * 6 5 4 9 9 C 1.39613 * 121.00891 * 306.80469 * 8 6 5 10 10 C 1.39076 * 119.22875 * 179.83771 * 9 8 6 11 11 O 1.35738 * 119.26996 * 180.20042 * 10 9 8 12 12 N 1.31867 * 121.45704 * 0.42028 * 10 9 8 13 13 C 1.33082 * 121.82919 * 359.80015 * 12 10 9 14 14 N 1.35730 * 133.20815 * 179.97438 * 13 12 10 15 15 C 1.30201 * 109.67978 * 180.02562 * 14 13 12 16 16 N 1.35972 * 110.07953 * 0.02562 * 15 14 13 17 17 C 1.46493 * 126.36359 * 180.02562 * 16 15 14 18 18 C 1.37610 * 107.26863 * 359.97438 * 16 15 14 19 19 C 1.47426 * 108.70418 * 1.05872 * 5 4 2 20 20 C 1.54905 * 104.83157 * 335.87364 * 19 5 4 21 21 H 1.09007 * 111.00003 * 278.92886 * 20 19 5 22 22 N 1.46505 * 111.00451 * 155.08467 * 20 19 5 23 23 C 1.36939 * 120.00076 * 92.80292 * 22 20 19 24 24 H 1.07999 * 120.00115 * 359.97438 * 23 22 20 25 25 C 1.38814 * 119.99613 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00375 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99614 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47210 * 89.99891 * 27 25 23 29 29 H 1.48507 * 109.46932 * 210.00004 * 27 25 23 30 30 H 1.48500 * 109.46908 * 329.99571 * 27 25 23 31 31 H 1.08995 * 109.47809 * 183.23649 * 1 2 3 32 32 H 1.09004 * 109.47397 * 303.24172 * 1 2 3 33 33 H 1.09000 * 109.47017 * 63.23711 * 1 2 3 34 34 H 1.08993 * 109.88202 * 259.96938 * 4 2 1 35 35 H 1.09004 * 109.88053 * 21.13706 * 4 2 1 36 36 H 1.07993 * 120.38316 * 0.02562 * 9 8 6 37 37 H 0.96701 * 113.99559 * 270.21408 * 11 10 9 38 38 H 1.08002 * 124.95963 * 180.02562 * 15 14 13 39 39 H 1.08998 * 109.47661 * 274.11908 * 17 16 15 40 40 H 1.08996 * 109.47592 * 34.12279 * 17 16 15 41 41 H 1.09001 * 109.46932 * 154.12453 * 17 16 15 42 42 H 1.09001 * 110.36981 * 217.03048 * 19 5 4 43 43 H 1.09009 * 110.45754 * 94.75352 * 19 5 4 44 44 H 0.96997 * 119.99737 * 272.79749 * 22 20 19 45 45 H 0.97000 * 119.99916 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0759 -0.7913 1.2073 5 7 3.2443 -1.5509 0.7390 6 6 3.9912 -2.3850 1.4893 7 8 3.7828 -2.4797 2.6830 8 6 5.0642 -3.1852 0.8601 9 6 4.8031 -3.9936 -0.2478 10 6 5.8406 -4.7279 -0.8123 11 8 5.5886 -5.5109 -1.8921 12 7 7.0628 -4.6835 -0.3192 13 6 7.3665 -3.9338 0.7376 14 7 8.5175 -3.7174 1.4236 15 6 8.2964 -2.8839 2.3991 16 7 6.9893 -2.5094 2.4060 17 6 6.3558 -1.5845 3.3490 18 6 6.3726 -3.1597 1.3618 19 6 3.4631 -1.2500 -0.6875 20 6 2.0789 -0.7955 -1.2137 21 1 1.4450 -1.6537 -1.4375 22 7 2.2214 0.0695 -2.3875 23 6 2.1866 -0.4714 -3.6451 24 1 2.0545 -1.5358 -3.7716 25 6 2.3222 0.3482 -4.7571 26 7 2.4838 1.6453 -4.6030 27 14 2.2755 -0.3898 -6.4725 28 1 0.8748 -0.4080 -6.9656 29 1 3.1115 0.4291 -7.3867 30 1 2.8030 -1.7773 -6.4290 31 1 -0.3634 -1.0259 0.0580 32 1 -0.3634 0.5633 0.8595 33 1 -0.3633 0.4628 -0.9176 34 1 2.3740 -0.1026 1.9977 35 1 1.3128 -1.4759 1.5775 36 1 3.8078 -4.0457 -0.6635 37 1 5.3242 -6.4141 -1.6697 38 1 9.0424 -2.5403 3.1005 39 1 6.0416 -2.1308 4.2383 40 1 7.0679 -0.8092 3.6315 41 1 5.4863 -1.1253 2.8787 42 1 3.7958 -2.1429 -1.2170 43 1 4.1935 -0.4487 -0.8002 44 1 2.3404 1.0254 -2.2739 45 1 2.5782 2.2181 -5.3801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054726777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:11 Heat of formation + Delta-G solvation = 19.922919 kcal Electronic energy + Delta-G solvation = -30836.645690 eV Core-core repulsion = 26662.433967 eV Total energy + Delta-G solvation = -4174.211722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -43.64011 -41.35897 -40.32835 -39.09809 -37.37961 -35.92128 -35.46659 -34.18022 -33.11882 -32.43236 -30.40982 -29.25297 -28.29881 -27.64796 -26.05932 -25.45031 -24.21706 -23.36070 -22.42169 -21.36279 -20.69836 -19.73422 -19.20456 -19.12028 -18.38734 -18.23941 -17.29692 -17.19950 -17.06065 -16.39455 -16.25643 -15.76697 -15.63105 -15.37340 -15.29426 -14.86090 -14.64048 -14.48833 -14.34679 -14.27842 -14.18824 -13.32228 -13.19554 -13.10152 -12.95995 -12.92508 -12.85449 -12.80960 -12.29199 -12.18659 -12.01384 -11.99300 -11.88623 -11.71610 -11.59678 -11.39367 -10.95718 -10.41229 -10.00974 -9.77992 -9.63060 -9.05420 -7.95226 -5.24326 -0.74714 -0.12347 1.13440 1.39070 1.49081 1.50734 1.51714 1.58633 1.72810 2.16611 2.49350 2.56074 2.91775 3.22602 3.26529 3.36610 3.59652 3.65829 3.77142 3.87300 3.90230 4.02701 4.05067 4.16991 4.29920 4.33577 4.41679 4.43716 4.55182 4.58007 4.63055 4.68724 4.85200 4.86966 4.90986 5.04352 5.09333 5.12961 5.15421 5.34046 5.47369 5.55935 5.89357 6.19877 6.26223 6.28812 6.63316 6.73953 6.81043 7.34527 8.05008 8.28290 9.27446 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010264 B = 0.003760 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.320338 B = 7444.834143 C = 9022.333460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 H 0.079 0.921 4 C 0.120 3.880 5 N -0.596 5.596 6 C 0.579 3.421 7 O -0.549 6.549 8 C -0.054 4.054 9 C -0.136 4.136 10 C 0.331 3.669 11 O -0.479 6.479 12 N -0.488 5.488 13 C 0.251 3.749 14 N -0.528 5.528 15 C 0.314 3.686 16 N -0.481 5.481 17 C 0.078 3.922 18 C 0.008 3.992 19 C 0.077 3.923 20 C 0.173 3.827 21 H 0.073 0.927 22 N -0.718 5.718 23 C -0.241 4.241 24 H 0.080 0.920 25 C -0.065 4.065 26 N -0.965 5.965 27 Si 0.962 3.038 28 H -0.286 1.286 29 H -0.301 1.301 30 H -0.270 1.270 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.171 0.829 37 H 0.424 0.576 38 H 0.284 0.716 39 H 0.091 0.909 40 H 0.130 0.870 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.377 0.623 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 -7.785 19.168 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.125 4.125 3 H 0.097 0.903 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.366 3.634 7 O -0.429 6.429 8 C -0.068 4.068 9 C -0.159 4.159 10 C 0.141 3.859 11 O -0.288 6.288 12 N -0.210 5.210 13 C 0.008 3.992 14 N -0.249 5.249 15 C 0.028 3.972 16 N -0.170 5.170 17 C -0.062 4.062 18 C -0.107 4.107 19 C -0.049 4.049 20 C 0.062 3.938 21 H 0.091 0.909 22 N -0.356 5.356 23 C -0.372 4.372 24 H 0.098 0.902 25 C -0.258 4.258 26 N -0.615 5.615 27 Si 0.792 3.208 28 H -0.213 1.213 29 H -0.227 1.227 30 H -0.195 1.195 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.189 0.811 37 H 0.285 0.715 38 H 0.299 0.701 39 H 0.109 0.891 40 H 0.148 0.852 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.209 0.791 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.148 -8.284 18.861 21.233 hybrid contribution -1.211 0.542 -0.744 1.521 sum 3.937 -7.742 18.116 20.091 Atomic orbital electron populations 1.21616 0.92374 1.02517 1.02109 1.22450 0.97685 0.99170 0.93149 0.90288 1.22145 0.86573 0.94693 0.96732 1.48398 1.29698 1.42611 1.12017 1.17624 0.80950 0.79232 0.85556 1.90769 1.70292 1.67513 1.14327 1.19074 0.90982 0.99908 0.96882 1.22198 1.01719 0.98121 0.93875 1.18601 0.86029 0.93907 0.87399 1.84846 1.88924 1.28580 1.26470 1.65841 1.22851 1.21685 1.10616 1.19212 0.90238 0.96197 0.93587 1.70359 1.24558 1.20744 1.09270 1.26787 0.84525 0.90260 0.95675 1.45426 1.09765 1.37412 1.24349 1.22399 0.99667 0.92571 0.91578 1.19533 0.94881 1.01256 0.95070 1.23401 1.01648 1.00690 0.79121 1.21527 0.92117 0.93761 0.86399 0.90907 1.42384 1.86237 1.06256 1.00753 1.19604 1.40395 0.92987 0.84238 0.90212 1.25425 1.03357 0.95819 1.01202 1.69786 1.58214 1.03877 1.29644 0.85310 0.77195 0.77696 0.80620 1.21307 1.22750 1.19521 0.91743 0.90679 0.93499 0.90328 0.89721 0.81120 0.71488 0.70123 0.89079 0.85210 0.91648 0.90739 0.92806 0.79075 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.16 71.98 0.66 -2.38 16 2 C -0.10 -2.80 3.20 -9.60 -0.03 -2.83 16 3 H 0.08 2.24 8.00 -2.39 -0.02 2.23 16 4 C 0.12 2.85 6.47 86.73 0.56 3.41 16 5 N -0.60 -16.24 3.33 -815.11 -2.71 -18.95 16 6 C 0.58 16.32 6.05 86.80 0.53 16.84 16 7 O -0.55 -16.54 15.20 -3.85 -0.06 -16.60 16 8 C -0.05 -1.56 5.22 -19.92 -0.10 -1.66 16 9 C -0.14 -3.68 8.01 22.80 0.18 -3.49 16 10 C 0.33 9.62 7.71 84.89 0.65 10.28 16 11 O -0.48 -11.73 13.55 -90.62 -1.23 -12.96 16 12 N -0.49 -16.46 10.41 -307.35 -3.20 -19.66 16 13 C 0.25 8.05 8.37 134.30 1.12 9.18 16 14 N -0.53 -14.74 11.27 -196.92 -2.22 -16.96 16 15 C 0.31 5.44 12.50 180.05 2.25 7.69 16 16 N -0.48 -9.99 3.19 -542.71 -1.73 -11.72 16 17 C 0.08 1.14 9.99 127.77 1.28 2.42 16 18 C 0.01 0.23 6.81 39.28 0.27 0.49 16 19 C 0.08 2.46 6.38 86.85 0.55 3.01 16 20 C 0.17 5.85 3.16 46.38 0.15 6.00 16 21 H 0.07 2.46 8.00 -2.38 -0.02 2.44 16 22 N -0.72 -32.30 5.24 -316.36 -1.66 -33.95 16 23 C -0.24 -12.28 9.96 84.03 0.84 -11.45 16 24 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 25 C -0.07 -3.54 5.50 84.86 0.47 -3.07 16 26 N -0.97 -56.26 13.06 21.65 0.28 -55.98 16 27 Si 0.96 44.51 29.55 68.60 2.03 46.54 16 28 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 29 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 30 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 31 H 0.06 1.38 8.06 -2.39 -0.02 1.36 16 32 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.82 7.77 -2.38 -0.02 1.80 16 36 H 0.17 3.99 7.35 -2.91 -0.02 3.97 16 37 H 0.42 5.35 9.06 -74.06 -0.67 4.68 16 38 H 0.28 0.99 8.06 -2.91 -0.02 0.96 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 1.32 5.59 -2.39 -0.01 1.31 16 42 H 0.07 2.41 5.41 -2.39 -0.01 2.39 16 43 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.38 18.44 7.76 -92.71 -0.72 17.72 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -76.89 374.67 -1.45 -78.34 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.33 Total: 27.49 kcal Atomic # 6 Polarization: 25.05 SS G_CDS: 9.37 Total: 34.42 kcal Atomic # 7 Polarization: -145.99 SS G_CDS: -11.24 Total: -157.23 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -1.29 Total: -29.56 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -76.89 -1.45 -78.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054726777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.262 kcal (2) G-P(sol) polarization free energy of solvation -76.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds