Wall clock time and date at job start Wed Apr 1 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.88996 * 2 1 4 4 C 1.54912 * 111.00739 * 236.11691 * 2 1 3 5 5 N 1.47426 * 104.83460 * 204.88284 * 4 2 1 6 6 C 1.34777 * 125.64501 * 204.09508 * 5 4 2 7 7 O 1.21673 * 120.00213 * 359.97438 * 6 5 4 8 8 C 1.46898 * 119.99415 * 179.72369 * 6 5 4 9 9 C 1.36383 * 126.76733 * 359.96167 * 8 6 5 10 10 N 1.35454 * 109.77163 * 179.83073 * 9 8 6 11 11 C 1.46504 * 124.78958 * 180.15997 * 10 9 8 12 12 C 1.38052 * 110.41754 * 0.44620 * 10 9 8 13 13 C 1.39112 * 133.15583 * 179.67409 * 12 10 9 14 14 C 1.37753 * 119.96374 * 179.97438 * 13 12 10 15 15 C 1.38954 * 120.60812 * 0.05395 * 14 13 12 16 16 F 1.35098 * 119.87372 * 179.97438 * 15 14 13 17 17 C 1.37944 * 120.24667 * 359.97438 * 15 14 13 18 18 C 1.39293 * 119.65216 * 359.97438 * 17 15 14 19 19 C 1.47022 * 108.70030 * 24.35404 * 5 4 2 20 20 C 1.54327 * 107.26726 * 358.58901 * 19 5 4 21 21 H 1.09005 * 110.99774 * 219.59803 * 20 19 5 22 22 N 1.46495 * 110.51798 * 96.45468 * 20 19 5 23 23 C 1.36935 * 120.00759 * 91.49630 * 22 20 19 24 24 H 1.08002 * 119.99295 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00481 * 180.02562 * 23 22 20 26 26 N 1.31623 * 119.99926 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00000 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47035 * 60.00400 * 27 25 23 29 29 H 1.48500 * 109.47269 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47360 * 300.00073 * 27 25 23 31 31 H 1.08996 * 109.47200 * 182.42613 * 1 2 3 32 32 H 1.09002 * 109.47069 * 302.42984 * 1 2 3 33 33 H 1.09002 * 109.46847 * 62.42243 * 1 2 3 34 34 H 1.09003 * 110.36066 * 86.04096 * 4 2 1 35 35 H 1.09000 * 110.45946 * 323.77109 * 4 2 1 36 36 H 1.07994 * 125.11364 * 359.97438 * 9 8 6 37 37 H 1.08997 * 109.47130 * 270.32913 * 11 10 9 38 38 H 1.08999 * 109.47210 * 30.32928 * 11 10 9 39 39 H 1.08999 * 109.47261 * 150.33086 * 11 10 9 40 40 H 1.08001 * 120.01778 * 0.04596 * 13 12 10 41 41 H 1.07993 * 119.69558 * 180.02562 * 14 13 12 42 42 H 1.08004 * 120.17559 * 179.97438 * 17 15 14 43 43 H 1.09000 * 109.87472 * 118.13696 * 19 5 4 44 44 H 1.09005 * 109.87946 * 239.29208 * 19 5 4 45 45 H 0.97003 * 119.99814 * 271.49847 * 22 20 19 46 46 H 0.96996 * 119.99903 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4275 -1.2421 -0.7740 6 6 4.4480 -1.5600 -1.5951 7 8 4.3000 -1.4988 -2.8013 8 6 5.7404 -1.9750 -1.0337 9 6 6.0586 -2.0856 0.2879 10 7 7.3422 -2.4987 0.4171 11 6 8.0217 -2.7286 1.6944 12 6 7.9215 -2.6663 -0.8248 13 6 9.1901 -3.0607 -1.2375 14 6 9.4834 -3.1376 -2.5812 15 6 8.5224 -2.8232 -3.5343 16 9 8.8263 -2.9033 -4.8483 17 6 7.2593 -2.4297 -3.1439 18 6 6.9509 -2.3493 -1.7879 19 6 3.4666 -1.2785 0.6952 20 6 2.0869 -0.8079 1.2019 21 1 2.1900 -0.1707 2.0803 22 7 1.2283 -1.9578 1.4961 23 6 1.2078 -2.4925 2.7566 24 1 1.8251 -2.0667 3.5338 25 6 0.3946 -3.5824 3.0351 26 7 -0.3565 -4.1023 2.0875 27 14 0.3674 -4.3122 4.7544 28 1 -0.0743 -3.2780 5.7241 29 1 -0.5747 -5.4595 4.7903 30 1 1.7298 -4.7796 5.1154 31 1 -0.3633 -1.0267 0.0435 32 1 -0.3633 0.5511 0.8674 33 1 -0.3633 0.4758 -0.9109 34 1 2.1554 -0.1714 -2.0838 35 1 1.4529 -1.6702 -1.4045 36 1 5.3875 -1.8776 1.1079 37 1 8.4993 -1.8057 2.0232 38 1 7.2941 -3.0471 2.4409 39 1 8.7774 -3.5042 1.5696 40 1 9.9442 -3.3075 -0.5048 41 1 10.4695 -3.4447 -2.8968 42 1 6.5133 -2.1852 -3.8857 43 1 3.6616 -2.2955 1.0356 44 1 4.2431 -0.6073 1.0622 45 1 0.6742 -2.3405 0.7979 46 1 -0.9245 -4.8641 2.2820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054748990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:26 Heat of formation + Delta-G solvation = 10.586903 kcal Electronic energy + Delta-G solvation = -30231.828451 eV Core-core repulsion = 26037.291927 eV Total energy + Delta-G solvation = -4194.536524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.48 seconds Orbital eigenvalues (eV) -48.81099 -41.67712 -39.53339 -37.39477 -37.02838 -33.98202 -33.22656 -32.29025 -30.59221 -30.26310 -29.21499 -27.87004 -27.18890 -25.62557 -24.10087 -23.22791 -22.69295 -21.78436 -20.87908 -19.29869 -19.22400 -17.70048 -17.42908 -17.07548 -16.67674 -15.93678 -15.72732 -15.61480 -15.33987 -15.10377 -14.83041 -14.61499 -14.28455 -13.92596 -13.73246 -13.38605 -13.34844 -13.01487 -12.99392 -12.96660 -12.63982 -12.56980 -12.44159 -12.01825 -11.88849 -11.58195 -11.21629 -11.15711 -11.08730 -10.97164 -10.77085 -10.45869 -10.33600 -9.99761 -9.80892 -9.72868 -9.58730 -9.06375 -8.35190 -8.26278 -7.79797 -7.13168 -5.89783 -3.20390 0.77427 1.22369 1.96716 2.47577 3.33545 3.35085 3.38409 3.39817 3.40987 3.83374 4.18816 4.37136 4.41424 4.46285 4.64384 4.73010 4.86577 4.88350 5.07194 5.12424 5.13288 5.20039 5.29375 5.34086 5.46197 5.50838 5.56673 5.59780 5.73905 5.79069 5.87530 5.99162 6.05291 6.10253 6.14374 6.19926 6.30401 6.34581 6.42950 6.49896 6.53738 6.66878 6.71642 6.91024 6.94411 6.96695 7.55483 7.93516 8.27738 8.57915 9.39512 9.94489 10.29109 11.32018 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.003087 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.642562 B = 9067.282305 C =10418.239103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.078 0.922 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.601 3.399 7 O -0.555 6.555 8 C -0.220 4.220 9 C 0.108 3.892 10 N -0.472 5.472 11 C 0.072 3.928 12 C 0.075 3.925 13 C -0.095 4.095 14 C -0.136 4.136 15 C 0.071 3.929 16 F -0.142 7.142 17 C -0.096 4.096 18 C -0.037 4.037 19 C 0.063 3.937 20 C 0.172 3.828 21 H 0.074 0.926 22 N -0.711 5.711 23 C -0.251 4.251 24 H 0.071 0.929 25 C -0.006 4.006 26 N -0.927 5.927 27 Si 0.907 3.093 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.196 0.804 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.146 0.854 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.388 0.612 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.567 5.799 -2.304 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.096 0.904 4 C -0.005 4.005 5 N -0.337 5.337 6 C 0.392 3.608 7 O -0.435 6.435 8 C -0.231 4.231 9 C -0.023 4.023 10 N -0.154 5.154 11 C -0.069 4.069 12 C -0.029 4.029 13 C -0.116 4.116 14 C -0.156 4.156 15 C 0.051 3.949 16 F -0.121 7.121 17 C -0.115 4.115 18 C -0.041 4.041 19 C -0.064 4.064 20 C 0.060 3.940 21 H 0.092 0.908 22 N -0.352 5.352 23 C -0.381 4.381 24 H 0.089 0.911 25 C -0.203 4.203 26 N -0.574 5.574 27 Si 0.738 3.262 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.212 0.788 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.164 0.836 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.223 0.777 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.696 5.667 -2.534 18.753 hybrid contribution -0.078 -0.753 0.709 1.037 sum 17.618 4.914 -1.825 18.381 Atomic orbital electron populations 1.21561 0.93345 1.03537 1.00540 1.22645 0.97015 0.98462 0.95416 0.90374 1.22237 0.82575 0.98363 0.97309 1.48202 1.11993 1.66188 1.07300 1.16769 0.81813 0.76902 0.85334 1.90739 1.83305 1.55344 1.14128 1.19942 0.94628 1.16670 0.91814 1.23212 0.84869 0.95582 0.98664 1.43699 1.10559 1.55773 1.05319 1.22109 0.98853 1.02846 0.83116 1.18283 0.95045 1.05297 0.84294 1.19768 0.93494 1.02959 0.95362 1.20712 0.99537 1.03649 0.91654 1.17342 0.94276 1.05411 0.77853 1.91477 1.93586 1.94385 1.32660 1.20584 0.95389 0.99918 0.95601 1.18430 0.92205 1.01726 0.91783 1.23564 1.01732 1.01540 0.79521 1.21210 0.88113 0.89888 0.94831 0.90844 1.42457 1.48926 1.32922 1.10845 1.19164 1.21096 1.10123 0.87759 0.91071 1.24755 0.99246 0.98754 0.97591 1.69643 1.29890 1.26016 1.31830 0.86289 0.77253 0.78601 0.84086 1.21178 1.21689 1.21314 0.90814 0.92379 0.93673 0.91163 0.91237 0.78770 0.90677 0.89008 0.89714 0.85231 0.84469 0.83645 0.90253 0.92596 0.77658 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.98 37.16 0.33 -1.69 16 2 C -0.12 -1.74 3.51 -88.47 -0.31 -2.05 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.12 1.94 6.33 -2.53 -0.02 1.92 16 5 N -0.60 -10.25 3.33 -171.97 -0.57 -10.82 16 6 C 0.60 11.01 7.83 -12.76 -0.10 10.91 16 7 O -0.56 -11.68 16.41 5.21 0.09 -11.59 16 8 C -0.22 -3.51 6.25 -103.31 -0.65 -4.16 16 9 C 0.11 1.38 9.81 -16.62 -0.16 1.22 16 10 N -0.47 -5.18 3.15 -121.58 -0.38 -5.56 16 11 C 0.07 0.46 10.99 59.85 0.66 1.12 16 12 C 0.07 0.93 6.79 -83.94 -0.57 0.36 16 13 C -0.10 -0.96 9.91 -39.43 -0.39 -1.35 16 14 C -0.14 -1.43 9.99 -39.49 -0.39 -1.82 16 15 C 0.07 0.94 7.29 -39.42 -0.29 0.65 16 16 F -0.14 -1.92 17.26 2.25 0.04 -1.88 16 17 C -0.10 -1.44 9.83 -39.30 -0.39 -1.83 16 18 C -0.04 -0.56 6.26 -104.95 -0.66 -1.22 16 19 C 0.06 0.97 4.73 -3.06 -0.01 0.96 16 20 C 0.17 2.94 3.40 -66.10 -0.22 2.72 16 21 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 22 N -0.71 -15.68 4.45 -51.65 -0.23 -15.91 16 23 C -0.25 -6.20 9.96 -15.06 -0.15 -6.35 16 24 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 25 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 26 N -0.93 -26.31 13.06 55.49 0.72 -25.59 16 27 Si 0.91 20.85 29.55 -169.99 -5.02 15.82 16 28 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 30 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 31 H 0.07 1.34 6.27 -51.93 -0.33 1.02 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 35 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 36 H 0.20 2.20 4.29 -52.49 -0.23 1.97 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.51 8.13 -51.93 -0.42 0.09 16 39 H 0.08 0.42 8.03 -51.93 -0.42 0.00 16 40 H 0.13 0.88 8.01 -52.49 -0.42 0.46 16 41 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.15 2.35 7.45 -52.48 -0.39 1.96 16 43 H 0.08 1.36 6.97 -51.93 -0.36 0.99 16 44 H 0.06 0.71 6.81 -51.93 -0.35 0.35 16 45 H 0.39 9.37 6.25 -40.82 -0.26 9.12 16 46 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -31.89 379.02 -9.15 -41.03 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.09 Total: 9.66 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.42 Total: -0.88 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.46 Total: -57.88 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.89 -9.15 -41.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054748990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.621 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.48 seconds