Wall clock time and date at job start Wed Apr 1 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.88996 * 2 1 4 4 C 1.54912 * 111.00739 * 236.11691 * 2 1 3 5 5 N 1.47426 * 104.83460 * 204.88284 * 4 2 1 6 6 C 1.34777 * 125.64501 * 204.09508 * 5 4 2 7 7 O 1.21673 * 120.00213 * 359.97438 * 6 5 4 8 8 C 1.46898 * 119.99415 * 179.72369 * 6 5 4 9 9 C 1.36383 * 126.76733 * 359.96167 * 8 6 5 10 10 N 1.35454 * 109.77163 * 179.83073 * 9 8 6 11 11 C 1.46504 * 124.78958 * 180.15997 * 10 9 8 12 12 C 1.38052 * 110.41754 * 0.44620 * 10 9 8 13 13 C 1.39112 * 133.15583 * 179.67409 * 12 10 9 14 14 C 1.37753 * 119.96374 * 179.97438 * 13 12 10 15 15 C 1.38954 * 120.60812 * 0.05395 * 14 13 12 16 16 F 1.35098 * 119.87372 * 179.97438 * 15 14 13 17 17 C 1.37944 * 120.24667 * 359.97438 * 15 14 13 18 18 C 1.39293 * 119.65216 * 359.97438 * 17 15 14 19 19 C 1.47022 * 108.70030 * 24.35404 * 5 4 2 20 20 C 1.54327 * 107.26726 * 358.58901 * 19 5 4 21 21 H 1.09005 * 110.99774 * 219.59803 * 20 19 5 22 22 N 1.46495 * 110.51798 * 96.45468 * 20 19 5 23 23 C 1.36935 * 120.00759 * 91.49630 * 22 20 19 24 24 H 1.08002 * 119.99295 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00481 * 180.02562 * 23 22 20 26 26 N 1.31623 * 119.99926 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00000 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47035 * 60.00400 * 27 25 23 29 29 H 1.48500 * 109.47269 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47360 * 300.00073 * 27 25 23 31 31 H 1.08996 * 109.47200 * 182.42613 * 1 2 3 32 32 H 1.09002 * 109.47069 * 302.42984 * 1 2 3 33 33 H 1.09002 * 109.46847 * 62.42243 * 1 2 3 34 34 H 1.09003 * 110.36066 * 86.04096 * 4 2 1 35 35 H 1.09000 * 110.45946 * 323.77109 * 4 2 1 36 36 H 1.07994 * 125.11364 * 359.97438 * 9 8 6 37 37 H 1.08997 * 109.47130 * 270.32913 * 11 10 9 38 38 H 1.08999 * 109.47210 * 30.32928 * 11 10 9 39 39 H 1.08999 * 109.47261 * 150.33086 * 11 10 9 40 40 H 1.08001 * 120.01778 * 0.04596 * 13 12 10 41 41 H 1.07993 * 119.69558 * 180.02562 * 14 13 12 42 42 H 1.08004 * 120.17559 * 179.97438 * 17 15 14 43 43 H 1.09000 * 109.87472 * 118.13696 * 19 5 4 44 44 H 1.09005 * 109.87946 * 239.29208 * 19 5 4 45 45 H 0.97003 * 119.99814 * 271.49847 * 22 20 19 46 46 H 0.96996 * 119.99903 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4275 -1.2421 -0.7740 6 6 4.4480 -1.5600 -1.5951 7 8 4.3000 -1.4988 -2.8013 8 6 5.7404 -1.9750 -1.0337 9 6 6.0586 -2.0856 0.2879 10 7 7.3422 -2.4987 0.4171 11 6 8.0217 -2.7286 1.6944 12 6 7.9215 -2.6663 -0.8248 13 6 9.1901 -3.0607 -1.2375 14 6 9.4834 -3.1376 -2.5812 15 6 8.5224 -2.8232 -3.5343 16 9 8.8263 -2.9033 -4.8483 17 6 7.2593 -2.4297 -3.1439 18 6 6.9509 -2.3493 -1.7879 19 6 3.4666 -1.2785 0.6952 20 6 2.0869 -0.8079 1.2019 21 1 2.1900 -0.1707 2.0803 22 7 1.2283 -1.9578 1.4961 23 6 1.2078 -2.4925 2.7566 24 1 1.8251 -2.0667 3.5338 25 6 0.3946 -3.5824 3.0351 26 7 -0.3565 -4.1023 2.0875 27 14 0.3674 -4.3122 4.7544 28 1 -0.0743 -3.2780 5.7241 29 1 -0.5747 -5.4595 4.7903 30 1 1.7298 -4.7796 5.1154 31 1 -0.3633 -1.0267 0.0435 32 1 -0.3633 0.5511 0.8674 33 1 -0.3633 0.4758 -0.9109 34 1 2.1554 -0.1714 -2.0838 35 1 1.4529 -1.6702 -1.4045 36 1 5.3875 -1.8776 1.1079 37 1 8.4993 -1.8057 2.0232 38 1 7.2941 -3.0471 2.4409 39 1 8.7774 -3.5042 1.5696 40 1 9.9442 -3.3075 -0.5048 41 1 10.4695 -3.4447 -2.8968 42 1 6.5133 -2.1852 -3.8857 43 1 3.6616 -2.2955 1.0356 44 1 4.2431 -0.6073 1.0622 45 1 0.6742 -2.3405 0.7979 46 1 -0.9245 -4.8641 2.2820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054748990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:21 Heat of formation + Delta-G solvation = -7.963887 kcal Electronic energy + Delta-G solvation = -30232.632873 eV Core-core repulsion = 26037.291927 eV Total energy + Delta-G solvation = -4195.340947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.85900 -42.64625 -40.86629 -38.82629 -37.94531 -35.66795 -34.33384 -33.59295 -32.24450 -31.14543 -30.23430 -29.38099 -28.15922 -26.71443 -25.81785 -24.42838 -23.81746 -22.86500 -21.92293 -20.68529 -20.40796 -19.36992 -18.49530 -18.23919 -17.69961 -17.18283 -16.89681 -16.74540 -16.42143 -16.21183 -16.07311 -15.95952 -15.69946 -15.30494 -14.98668 -14.61302 -14.57902 -14.18417 -14.09961 -13.83625 -13.75191 -13.58989 -13.39692 -13.27343 -13.13564 -12.96103 -12.84239 -12.71707 -12.28495 -12.15893 -12.07619 -12.06261 -11.90977 -11.41924 -11.37524 -11.03952 -10.85788 -10.79058 -9.65543 -9.31273 -8.97809 -8.77973 -7.87793 -5.16347 -0.20699 0.26544 0.87618 1.52787 1.54668 1.60658 1.63768 2.07687 2.28146 2.61152 2.69988 3.20814 3.43508 3.47500 3.52815 3.62506 3.80839 3.91567 3.93006 3.96834 4.09972 4.14965 4.26598 4.40724 4.43767 4.46214 4.50655 4.58924 4.64989 4.68177 4.72510 4.78234 4.87752 4.91329 4.96955 5.02942 5.12329 5.15842 5.21769 5.29407 5.35366 5.47044 5.56824 5.58616 5.64177 5.95549 6.12746 6.32389 6.59305 7.21268 7.40198 8.14722 8.37430 9.35453 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.003087 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.642562 B = 9067.282305 C =10418.239103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 H 0.110 0.890 4 C 0.116 3.884 5 N -0.606 5.606 6 C 0.593 3.407 7 O -0.600 6.600 8 C -0.268 4.268 9 C 0.131 3.869 10 N -0.461 5.461 11 C 0.060 3.940 12 C 0.069 3.931 13 C -0.074 4.074 14 C -0.131 4.131 15 C 0.066 3.934 16 F -0.149 7.149 17 C -0.131 4.131 18 C -0.066 4.066 19 C 0.072 3.928 20 C 0.164 3.836 21 H 0.093 0.907 22 N -0.723 5.723 23 C -0.233 4.233 24 H 0.089 0.911 25 C -0.075 4.075 26 N -0.971 5.971 27 Si 0.968 3.032 28 H -0.277 1.277 29 H -0.308 1.308 30 H -0.275 1.275 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.212 0.788 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.177 0.823 41 H 0.173 0.827 42 H 0.114 0.886 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.373 0.627 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.247 6.727 0.732 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.128 0.872 4 C -0.007 4.007 5 N -0.337 5.337 6 C 0.385 3.615 7 O -0.483 6.483 8 C -0.278 4.278 9 C -0.003 4.003 10 N -0.140 5.140 11 C -0.079 4.079 12 C -0.035 4.035 13 C -0.093 4.093 14 C -0.150 4.150 15 C 0.046 3.954 16 F -0.128 7.128 17 C -0.150 4.150 18 C -0.071 4.071 19 C -0.053 4.053 20 C 0.054 3.946 21 H 0.111 0.889 22 N -0.362 5.362 23 C -0.365 4.365 24 H 0.107 0.893 25 C -0.267 4.267 26 N -0.622 5.622 27 Si 0.798 3.202 28 H -0.203 1.203 29 H -0.235 1.235 30 H -0.201 1.201 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.228 0.772 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.194 0.806 41 H 0.190 0.810 42 H 0.132 0.868 43 H 0.083 0.917 44 H 0.114 0.886 45 H 0.206 0.794 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 21.448 6.639 0.551 22.459 hybrid contribution -1.116 -0.982 -0.259 1.509 sum 20.332 5.656 0.292 21.106 Atomic orbital electron populations 1.21482 0.93596 1.01548 1.01783 1.22608 0.96665 0.99335 0.93360 0.87228 1.22215 0.82451 0.97649 0.98377 1.48276 1.11694 1.65863 1.07910 1.17268 0.82907 0.76298 0.84977 1.90696 1.84220 1.57399 1.15997 1.19870 0.94071 1.20251 0.93591 1.23300 0.85821 0.93617 0.97564 1.44005 1.09808 1.53746 1.06459 1.22558 0.99521 1.04888 0.80904 1.18531 0.95409 1.05347 0.84248 1.20277 0.93080 1.00034 0.95936 1.21101 1.00126 1.02514 0.91287 1.17600 0.94294 1.05309 0.78176 1.91455 1.93535 1.94419 1.33372 1.20469 0.96074 1.02901 0.95585 1.18661 0.93176 1.02869 0.92402 1.23454 1.01722 1.01632 0.78527 1.21500 0.88037 0.88727 0.96352 0.88896 1.42651 1.49644 1.34185 1.09741 1.19659 1.19112 1.08798 0.88886 0.89282 1.25505 1.00225 1.00239 1.00743 1.69826 1.31773 1.26820 1.33781 0.85297 0.77134 0.77329 0.80475 1.20340 1.23531 1.20127 0.94274 0.91974 0.91624 0.90991 0.93912 0.77177 0.88408 0.87895 0.87485 0.80552 0.80959 0.86788 0.91692 0.88567 0.79354 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 8.98 71.98 0.65 -3.19 16 2 C -0.10 -2.89 3.51 -9.40 -0.03 -2.93 16 3 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 4 C 0.12 3.93 6.33 86.86 0.55 4.48 16 5 N -0.61 -20.80 3.33 -816.21 -2.71 -23.52 16 6 C 0.59 22.75 7.83 86.51 0.68 23.42 16 7 O -0.60 -27.32 16.41 -4.26 -0.07 -27.39 16 8 C -0.27 -8.65 6.25 -19.01 -0.12 -8.77 16 9 C 0.13 3.10 9.81 83.70 0.82 3.92 16 10 N -0.46 -8.51 3.15 -538.58 -1.69 -10.21 16 11 C 0.06 0.46 10.99 127.77 1.40 1.86 16 12 C 0.07 1.55 6.79 38.89 0.26 1.82 16 13 C -0.07 -1.16 9.91 22.36 0.22 -0.94 16 14 C -0.13 -2.36 9.99 22.33 0.22 -2.13 16 15 C 0.07 1.74 7.29 22.37 0.16 1.91 16 16 F -0.15 -4.10 17.26 44.97 0.78 -3.32 16 17 C -0.13 -4.22 9.83 22.45 0.22 -4.00 16 18 C -0.07 -2.07 6.26 -20.08 -0.13 -2.19 16 19 C 0.07 2.10 4.73 86.73 0.41 2.51 16 20 C 0.16 5.33 3.40 46.18 0.16 5.49 16 21 H 0.09 2.72 8.09 -2.38 -0.02 2.70 16 22 N -0.72 -31.82 4.45 -317.33 -1.41 -33.23 16 23 C -0.23 -11.32 9.96 84.03 0.84 -10.48 16 24 H 0.09 3.94 7.83 -2.91 -0.02 3.91 16 25 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 26 N -0.97 -57.00 13.06 21.65 0.28 -56.71 16 27 Si 0.97 42.85 29.55 68.60 2.03 44.88 16 28 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 29 H -0.31 -14.39 7.11 99.48 0.71 -13.68 16 30 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 31 H 0.04 1.47 6.27 -2.39 -0.01 1.45 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 35 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 36 H 0.21 4.11 4.29 -2.91 -0.01 4.10 16 37 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.10 0.62 8.13 -2.39 -0.02 0.61 16 39 H 0.11 0.40 8.03 -2.39 -0.02 0.38 16 40 H 0.18 1.16 8.01 -2.91 -0.02 1.14 16 41 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.11 4.23 7.45 -2.91 -0.02 4.21 16 43 H 0.06 2.13 6.97 -2.39 -0.02 2.12 16 44 H 0.10 2.09 6.81 -2.38 -0.02 2.07 16 45 H 0.37 18.68 6.25 -92.71 -0.58 18.10 16 46 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -75.51 379.02 4.43 -71.09 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.45 Total: 31.15 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 6.78 Total: 7.27 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -5.54 Total: -123.67 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.07 Total: -27.39 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.32 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -75.51 4.43 -71.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054748990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.125 kcal (2) G-P(sol) polarization free energy of solvation -75.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds