Wall clock time and date at job start Wed Apr 1 2020 02:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35722 * 116.99960 * 2 1 4 4 C 1.40442 * 119.68358 * 185.03690 * 3 2 1 5 5 C 1.36123 * 120.05724 * 180.02562 * 4 3 2 6 6 C 1.40742 * 119.30128 * 359.97438 * 5 4 3 7 7 N 1.33207 * 132.16509 * 180.02562 * 6 5 4 8 8 C 1.32255 * 109.69723 * 180.02562 * 7 6 5 9 9 C 1.38767 * 108.13552 * 359.97438 * 8 7 6 10 10 C 1.46183 * 126.76394 * 179.97438 * 9 8 7 11 11 O 1.21761 * 120.00020 * 185.75109 * 10 9 8 12 12 N 1.34779 * 120.00085 * 5.74638 * 10 9 8 13 13 C 1.47423 * 125.65190 * 175.35846 * 12 10 9 14 14 C 1.54907 * 104.83505 * 204.09277 * 13 12 10 15 15 H 1.08994 * 111.00229 * 81.06325 * 14 13 12 16 16 C 1.52994 * 111.00403 * 204.87989 * 14 13 12 17 17 C 1.55164 * 101.57981 * 322.99131 * 14 13 12 18 18 H 1.09000 * 110.71877 * 276.95686 * 17 14 13 19 19 N 1.46494 * 110.72011 * 153.86336 * 17 14 13 20 20 C 1.36939 * 120.00053 * 159.73374 * 19 17 14 21 21 H 1.07998 * 119.99896 * 5.01251 * 20 19 17 22 22 C 1.38819 * 120.00072 * 185.01350 * 20 19 17 23 23 N 1.31618 * 119.99742 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99787 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47172 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46888 * 120.00089 * 24 22 20 27 27 H 1.48497 * 109.47041 * 239.99884 * 24 22 20 28 28 C 1.47024 * 125.64644 * 355.04841 * 12 10 9 29 29 N 1.36463 * 119.18495 * 0.02562 * 6 5 4 30 30 N 1.31201 * 119.68760 * 4.76562 * 3 2 1 31 31 H 1.09001 * 109.46799 * 175.01513 * 1 2 3 32 32 H 1.08999 * 109.47177 * 295.01754 * 1 2 3 33 33 H 1.09002 * 109.46776 * 55.01876 * 1 2 3 34 34 H 1.07999 * 119.97338 * 359.97438 * 4 3 2 35 35 H 1.08003 * 120.35214 * 180.02562 * 5 4 3 36 36 H 1.07994 * 125.93193 * 179.97438 * 8 7 6 37 37 H 1.08997 * 110.36477 * 322.93573 * 13 12 10 38 38 H 1.09006 * 110.36400 * 85.14136 * 13 12 10 39 39 H 1.08996 * 109.47555 * 58.54569 * 16 14 13 40 40 H 1.09006 * 109.47008 * 178.54378 * 16 14 13 41 41 H 1.08995 * 109.47393 * 298.54254 * 16 14 13 42 42 H 0.97002 * 120.00454 * 339.74033 * 19 17 14 43 43 H 0.97001 * 120.00022 * 179.97438 * 23 22 20 44 44 H 1.09003 * 109.88584 * 298.39698 * 28 12 10 45 45 H 1.09002 * 109.87997 * 59.55929 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4439 1.2772 -0.1071 5 6 4.0698 2.4860 -0.1074 6 6 3.3008 3.6599 0.0000 7 7 3.6355 4.9489 0.0253 8 6 2.5463 5.6901 0.1410 9 6 1.4497 4.8413 0.1930 10 6 0.0466 5.2313 0.3197 11 8 -0.8120 4.3792 0.4588 12 7 -0.2967 6.5341 0.2827 13 6 -1.6735 7.0608 0.3014 14 6 -1.5733 8.4566 -0.3629 15 1 -1.5637 8.3724 -1.4495 16 6 -2.7095 9.3688 0.1036 17 6 -0.2038 8.9567 0.1683 18 1 -0.3107 9.3894 1.1630 19 7 0.3876 9.9271 -0.7561 20 6 1.3551 10.7905 -0.3159 21 1 1.7399 10.7031 0.6895 22 6 1.8412 11.7781 -1.1617 23 7 1.3725 11.8842 -2.3871 24 14 3.1603 12.9563 -0.5608 25 1 3.5150 12.6278 0.8432 26 1 4.3660 12.8284 -1.4184 27 1 2.6491 14.3487 -0.6300 28 6 0.6401 7.6657 0.2235 29 7 1.9437 3.5593 0.1025 30 7 1.3282 2.3039 0.0947 31 1 -0.3633 -1.0238 -0.0893 32 1 -0.3633 0.4346 0.9312 33 1 -0.3633 0.5892 -0.8420 34 1 4.0235 0.3696 -0.1885 35 1 5.1451 2.5438 -0.1899 36 1 2.5156 6.7686 0.1871 37 1 -2.3351 6.4134 -0.2742 38 1 -2.0310 7.1517 1.3271 39 1 -2.6715 9.4711 1.1881 40 1 -2.6003 10.3503 -0.3580 41 1 -3.6663 8.9351 -0.1870 42 1 0.0940 9.9582 -1.6801 43 1 1.7119 12.5745 -2.9780 44 1 1.2717 7.6711 1.1120 45 1 1.2571 7.5897 -0.6719 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054816237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:55 Heat of formation + Delta-G solvation = 85.339727 kcal Electronic energy + Delta-G solvation = -30169.733430 eV Core-core repulsion = 25998.358394 eV Total energy + Delta-G solvation = -4171.375037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.73174 -40.19798 -39.59461 -37.48899 -37.01474 -34.14331 -33.88421 -32.69732 -30.93899 -30.77618 -29.89998 -28.04070 -27.66865 -26.37496 -24.40091 -24.18081 -23.43797 -22.49081 -21.26363 -20.23113 -19.95343 -18.94433 -18.04707 -17.19474 -17.11416 -16.90052 -16.45765 -15.99210 -15.68126 -15.41360 -15.19564 -14.61582 -14.48346 -14.08784 -13.98121 -13.72784 -13.57205 -13.19987 -13.06511 -12.85131 -12.61902 -12.46059 -12.38686 -12.07308 -11.64309 -11.53200 -11.43114 -11.15627 -11.02377 -10.99491 -10.72504 -10.62730 -10.29469 -10.24715 -10.00133 -9.83169 -9.72702 -9.32277 -9.01115 -8.56406 -8.31449 -7.11520 -5.87064 -3.18656 0.09194 0.72283 1.34156 2.14613 2.52455 3.02986 3.06575 3.34980 3.39368 3.46047 3.47685 3.75715 3.87279 4.28084 4.50029 4.61281 4.71989 4.82342 4.93609 4.94663 5.01549 5.08790 5.19351 5.21105 5.28748 5.30982 5.43437 5.53484 5.57805 5.69145 5.71215 5.80489 5.85312 5.96355 6.14202 6.20560 6.26470 6.30241 6.43264 6.49449 6.53447 6.58926 6.82192 7.23814 7.45867 7.61487 7.66028 8.25677 8.30625 9.42656 9.95491 10.30409 11.34623 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.002920 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.883155 B = 9587.421346 C =11299.142438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.288 6.288 3 C 0.337 3.663 4 C -0.169 4.169 5 C 0.017 3.983 6 C 0.160 3.840 7 N -0.452 5.452 8 C 0.072 3.928 9 C -0.046 4.046 10 C 0.603 3.397 11 O -0.539 6.539 12 N -0.601 5.601 13 C 0.120 3.880 14 C -0.113 4.113 15 H 0.085 0.915 16 C -0.133 4.133 17 C 0.178 3.822 18 H 0.069 0.931 19 N -0.710 5.710 20 C -0.250 4.250 21 H 0.074 0.926 22 C -0.006 4.006 23 N -0.927 5.927 24 Si 0.906 3.094 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.057 3.943 29 N -0.210 5.210 30 N -0.307 5.307 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.165 0.835 35 H 0.175 0.825 36 H 0.215 0.785 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.067 0.933 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 -20.929 5.061 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.189 6.189 3 C 0.128 3.872 4 C -0.194 4.194 5 C -0.010 4.010 6 C -0.084 4.084 7 N -0.172 5.172 8 C -0.090 4.090 9 C -0.167 4.167 10 C 0.392 3.608 11 O -0.417 6.417 12 N -0.334 5.334 13 C -0.002 4.002 14 C -0.133 4.133 15 H 0.103 0.897 16 C -0.190 4.190 17 C 0.065 3.935 18 H 0.087 0.913 19 N -0.350 5.350 20 C -0.381 4.381 21 H 0.092 0.908 22 C -0.203 4.203 23 N -0.574 5.574 24 Si 0.737 3.263 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.068 4.068 29 N 0.018 4.982 30 N -0.141 5.141 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.183 0.817 35 H 0.193 0.807 36 H 0.232 0.768 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.222 0.778 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.965 -21.246 5.238 21.903 hybrid contribution 0.542 0.251 -0.101 0.606 sum -0.422 -20.996 5.136 21.619 Atomic orbital electron populations 1.23136 0.75830 1.04001 1.03690 1.86368 1.24017 1.21259 1.87269 1.20707 0.90713 0.85575 0.90245 1.20854 0.91456 1.00061 1.07072 1.20492 1.01453 0.86864 0.92151 1.21308 0.81856 0.95261 1.10025 1.70528 1.29413 0.98162 1.19122 1.24216 0.85334 1.00956 0.98487 1.20856 0.96588 0.80177 1.19112 1.16050 0.85256 0.81745 0.77799 1.90841 1.50696 1.49421 1.50707 1.48083 1.09287 1.04193 1.71807 1.22288 0.82572 0.94534 1.00830 1.22641 0.96847 0.93026 1.00825 0.89675 1.21599 0.96403 0.99923 1.01116 1.21253 0.89071 0.87851 0.95283 0.91266 1.42366 1.45384 1.37698 1.09572 1.19274 1.12959 1.07787 0.98048 0.90816 1.24781 1.00253 0.99104 0.96152 1.69671 1.45571 1.35864 1.06317 0.86140 0.81286 0.80917 0.77950 1.20365 1.21762 1.21841 1.23784 0.94077 0.87280 1.01688 1.45771 1.06220 1.02917 1.43270 1.75705 1.23015 0.87798 1.27596 0.87571 0.91371 0.91413 0.81708 0.80721 0.76849 0.90809 0.91285 0.92702 0.91296 0.93170 0.77845 0.93379 0.91441 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.40 101.05 1.05 1.29 16 2 O -0.29 -2.82 10.49 -18.87 -0.20 -3.01 16 3 C 0.34 3.87 7.60 -16.99 -0.13 3.75 16 4 C -0.17 -1.43 9.97 -39.51 -0.39 -1.82 16 5 C 0.02 0.16 10.10 -39.40 -0.40 -0.24 16 6 C 0.16 2.29 7.85 -156.13 -1.23 1.06 16 7 N -0.45 -7.12 11.25 -12.23 -0.14 -7.26 16 8 C 0.07 1.14 10.36 -17.17 -0.18 0.96 16 9 C -0.05 -0.78 7.08 -81.85 -0.58 -1.36 16 10 C 0.60 10.78 7.80 -13.07 -0.10 10.68 16 11 O -0.54 -10.85 17.11 5.13 0.09 -10.76 16 12 N -0.60 -9.68 3.33 -172.23 -0.57 -10.25 16 13 C 0.12 1.74 6.35 -2.53 -0.02 1.72 16 14 C -0.11 -1.70 3.25 -88.47 -0.29 -1.99 16 15 H 0.08 1.36 8.00 -51.93 -0.42 0.94 16 16 C -0.13 -1.78 9.30 37.15 0.35 -1.43 16 17 C 0.18 3.11 3.05 -66.09 -0.20 2.91 16 18 H 0.07 1.22 7.99 -51.93 -0.41 0.80 16 19 N -0.71 -15.87 5.17 -51.65 -0.27 -16.14 16 20 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 23 N -0.93 -26.42 13.06 55.49 0.72 -25.70 16 24 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 C 0.06 0.93 4.76 -3.06 -0.01 0.91 16 29 N -0.21 -3.41 4.04 -8.68 -0.04 -3.44 16 30 N -0.31 -4.64 10.48 30.56 0.32 -4.32 16 31 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 34 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.18 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.22 3.17 4.46 -52.49 -0.23 2.93 16 37 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 38 H 0.07 0.92 8.04 -51.93 -0.42 0.51 16 39 H 0.05 0.69 8.11 -51.93 -0.42 0.26 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.39 9.37 7.73 -40.82 -0.32 9.05 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.07 1.02 7.13 -51.93 -0.37 0.65 16 45 H 0.08 1.43 6.62 -51.93 -0.34 1.08 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -33.26 378.20 -7.63 -40.89 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.85 Total: 8.33 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -2.38 Total: 9.74 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: 0.03 Total: -67.11 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.11 Total: -13.77 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.26 -7.63 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054816237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.230 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds