Wall clock time and date at job start Wed Apr 1 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35722 * 116.99960 * 2 1 4 4 C 1.40442 * 119.68358 * 185.03690 * 3 2 1 5 5 C 1.36123 * 120.05724 * 180.02562 * 4 3 2 6 6 C 1.40742 * 119.30128 * 359.97438 * 5 4 3 7 7 N 1.33207 * 132.16509 * 180.02562 * 6 5 4 8 8 C 1.32255 * 109.69723 * 180.02562 * 7 6 5 9 9 C 1.38767 * 108.13552 * 359.97438 * 8 7 6 10 10 C 1.46183 * 126.76394 * 179.97438 * 9 8 7 11 11 O 1.21761 * 120.00020 * 185.75109 * 10 9 8 12 12 N 1.34779 * 120.00085 * 5.74638 * 10 9 8 13 13 C 1.47423 * 125.65190 * 175.35846 * 12 10 9 14 14 C 1.54907 * 104.83505 * 204.09277 * 13 12 10 15 15 H 1.08994 * 111.00229 * 81.06325 * 14 13 12 16 16 C 1.52994 * 111.00403 * 204.87989 * 14 13 12 17 17 C 1.55164 * 101.57981 * 322.99131 * 14 13 12 18 18 H 1.09000 * 110.71877 * 276.95686 * 17 14 13 19 19 N 1.46494 * 110.72011 * 153.86336 * 17 14 13 20 20 C 1.36939 * 120.00053 * 159.73374 * 19 17 14 21 21 H 1.07998 * 119.99896 * 5.01251 * 20 19 17 22 22 C 1.38819 * 120.00072 * 185.01350 * 20 19 17 23 23 N 1.31618 * 119.99742 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99787 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47172 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46888 * 120.00089 * 24 22 20 27 27 H 1.48497 * 109.47041 * 239.99884 * 24 22 20 28 28 C 1.47024 * 125.64644 * 355.04841 * 12 10 9 29 29 N 1.36463 * 119.18495 * 0.02562 * 6 5 4 30 30 N 1.31201 * 119.68760 * 4.76562 * 3 2 1 31 31 H 1.09001 * 109.46799 * 175.01513 * 1 2 3 32 32 H 1.08999 * 109.47177 * 295.01754 * 1 2 3 33 33 H 1.09002 * 109.46776 * 55.01876 * 1 2 3 34 34 H 1.07999 * 119.97338 * 359.97438 * 4 3 2 35 35 H 1.08003 * 120.35214 * 180.02562 * 5 4 3 36 36 H 1.07994 * 125.93193 * 179.97438 * 8 7 6 37 37 H 1.08997 * 110.36477 * 322.93573 * 13 12 10 38 38 H 1.09006 * 110.36400 * 85.14136 * 13 12 10 39 39 H 1.08996 * 109.47555 * 58.54569 * 16 14 13 40 40 H 1.09006 * 109.47008 * 178.54378 * 16 14 13 41 41 H 1.08995 * 109.47393 * 298.54254 * 16 14 13 42 42 H 0.97002 * 120.00454 * 339.74033 * 19 17 14 43 43 H 0.97001 * 120.00022 * 179.97438 * 23 22 20 44 44 H 1.09003 * 109.88584 * 298.39698 * 28 12 10 45 45 H 1.09002 * 109.87997 * 59.55929 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4439 1.2772 -0.1071 5 6 4.0698 2.4860 -0.1074 6 6 3.3008 3.6599 0.0000 7 7 3.6355 4.9489 0.0253 8 6 2.5463 5.6901 0.1410 9 6 1.4497 4.8413 0.1930 10 6 0.0466 5.2313 0.3197 11 8 -0.8120 4.3792 0.4588 12 7 -0.2967 6.5341 0.2827 13 6 -1.6735 7.0608 0.3014 14 6 -1.5733 8.4566 -0.3629 15 1 -1.5637 8.3724 -1.4495 16 6 -2.7095 9.3688 0.1036 17 6 -0.2038 8.9567 0.1683 18 1 -0.3107 9.3894 1.1630 19 7 0.3876 9.9271 -0.7561 20 6 1.3551 10.7905 -0.3159 21 1 1.7399 10.7031 0.6895 22 6 1.8412 11.7781 -1.1617 23 7 1.3725 11.8842 -2.3871 24 14 3.1603 12.9563 -0.5608 25 1 3.5150 12.6278 0.8432 26 1 4.3660 12.8284 -1.4184 27 1 2.6491 14.3487 -0.6300 28 6 0.6401 7.6657 0.2235 29 7 1.9437 3.5593 0.1025 30 7 1.3282 2.3039 0.0947 31 1 -0.3633 -1.0238 -0.0893 32 1 -0.3633 0.4346 0.9312 33 1 -0.3633 0.5892 -0.8420 34 1 4.0235 0.3696 -0.1885 35 1 5.1451 2.5438 -0.1899 36 1 2.5156 6.7686 0.1871 37 1 -2.3351 6.4134 -0.2742 38 1 -2.0310 7.1517 1.3271 39 1 -2.6715 9.4711 1.1881 40 1 -2.6003 10.3503 -0.3580 41 1 -3.6663 8.9351 -0.1870 42 1 0.0940 9.9582 -1.6801 43 1 1.7119 12.5745 -2.9780 44 1 1.2717 7.6711 1.1120 45 1 1.2571 7.5897 -0.6719 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054816237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:54 Heat of formation + Delta-G solvation = 60.807322 kcal Electronic energy + Delta-G solvation = -30170.797235 eV Core-core repulsion = 25998.358394 eV Total energy + Delta-G solvation = -4172.438842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.80987 -41.24609 -40.73909 -38.89590 -37.94386 -35.85415 -34.85205 -34.09906 -32.56072 -31.90004 -30.98722 -29.23680 -28.85905 -27.47263 -26.02964 -25.21021 -24.60081 -23.73299 -22.55394 -21.47270 -21.25848 -19.80376 -19.18813 -19.02645 -18.30363 -17.89772 -17.53654 -17.12391 -16.87054 -16.73738 -16.21526 -16.06997 -15.55981 -15.36871 -15.30504 -14.93895 -14.70331 -14.58012 -14.43344 -13.98965 -13.83631 -13.72515 -13.35214 -13.06080 -12.96720 -12.84783 -12.84258 -12.55587 -12.47055 -12.12636 -12.08382 -12.00031 -11.83268 -11.65214 -11.44808 -11.33589 -11.09897 -10.88759 -10.36795 -9.83708 -9.47300 -9.00931 -7.89600 -5.19310 -0.75062 -0.34168 0.31044 1.04923 1.53376 1.55298 1.61662 1.63883 1.92143 2.03905 2.07571 2.60815 2.82018 2.87644 3.35928 3.41964 3.54193 3.68316 3.81920 3.83775 3.88694 4.00496 4.20603 4.23801 4.24224 4.31335 4.34880 4.43701 4.49535 4.61317 4.62317 4.66938 4.68979 4.85564 4.88030 4.89440 5.08612 5.13160 5.15610 5.22852 5.35941 5.51427 5.62367 5.69138 6.23377 6.28925 6.32268 6.33404 6.92491 7.39548 8.10334 8.34362 9.33383 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.002920 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.883155 B = 9587.421346 C =11299.142438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.280 6.280 3 C 0.336 3.664 4 C -0.141 4.141 5 C 0.011 3.989 6 C 0.163 3.837 7 N -0.475 5.475 8 C 0.074 3.926 9 C -0.083 4.083 10 C 0.603 3.397 11 O -0.570 6.570 12 N -0.598 5.598 13 C 0.122 3.878 14 C -0.103 4.103 15 H 0.072 0.928 16 C -0.127 4.127 17 C 0.173 3.827 18 H 0.076 0.924 19 N -0.720 5.720 20 C -0.236 4.236 21 H 0.084 0.916 22 C -0.069 4.069 23 N -0.966 5.966 24 Si 0.965 3.035 25 H -0.263 1.263 26 H -0.299 1.299 27 H -0.298 1.298 28 C 0.070 3.930 29 N -0.223 5.223 30 N -0.351 5.351 31 H 0.145 0.855 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.215 0.785 35 H 0.217 0.783 36 H 0.217 0.783 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.375 0.625 43 H 0.249 0.751 44 H 0.081 0.919 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.621 -23.334 6.296 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.180 6.180 3 C 0.127 3.873 4 C -0.166 4.166 5 C -0.014 4.014 6 C -0.083 4.083 7 N -0.195 5.195 8 C -0.088 4.088 9 C -0.203 4.203 10 C 0.392 3.608 11 O -0.451 6.451 12 N -0.330 5.330 13 C 0.001 3.999 14 C -0.123 4.123 15 H 0.091 0.909 16 C -0.184 4.184 17 C 0.063 3.937 18 H 0.094 0.906 19 N -0.359 5.359 20 C -0.367 4.367 21 H 0.102 0.898 22 C -0.262 4.262 23 N -0.617 5.617 24 Si 0.795 3.205 25 H -0.187 1.187 26 H -0.226 1.226 27 H -0.226 1.226 28 C -0.055 4.055 29 N 0.006 4.994 30 N -0.187 5.187 31 H 0.163 0.837 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.232 0.768 35 H 0.234 0.766 36 H 0.233 0.767 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.208 0.792 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.149 -23.673 6.524 24.556 hybrid contribution 0.173 0.725 -0.459 0.875 sum 0.322 -22.948 6.065 23.738 Atomic orbital electron populations 1.23289 0.75112 1.06023 1.02344 1.86409 1.24683 1.20184 1.86734 1.21293 0.92195 0.85240 0.88550 1.21411 0.90047 1.01519 1.03671 1.21095 1.03114 0.85241 0.91980 1.22154 0.81825 0.96166 1.08174 1.70512 1.29337 0.99043 1.20631 1.24192 0.85355 1.01030 0.98198 1.20763 0.96250 0.81217 1.22090 1.16217 0.85589 0.81735 0.77258 1.90803 1.51604 1.50126 1.52518 1.48079 1.09863 1.03790 1.71281 1.22375 0.81924 0.93806 1.01834 1.22541 0.96057 0.93586 1.00101 0.90919 1.21556 0.96718 0.98453 1.01718 1.21434 0.90347 0.87277 0.94663 0.90609 1.42476 1.45266 1.38383 1.09728 1.19658 1.12171 1.06911 0.97978 0.89824 1.25480 1.02855 1.01296 0.96532 1.69814 1.47515 1.36814 1.07537 0.85201 0.78674 0.78638 0.78019 1.18668 1.22645 1.22596 1.23502 0.93704 0.86552 1.01762 1.45847 1.06855 1.03046 1.43670 1.75649 1.24681 0.88235 1.30093 0.83742 0.92679 0.92902 0.76793 0.76579 0.76694 0.90623 0.89468 0.91415 0.93280 0.90896 0.79233 0.94202 0.90088 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.40 113.37 1.18 1.59 16 2 O -0.28 -4.80 10.49 -90.44 -0.95 -5.75 16 3 C 0.34 7.04 7.60 85.32 0.65 7.68 16 4 C -0.14 -1.84 9.97 22.31 0.22 -1.61 16 5 C 0.01 0.18 10.10 22.39 0.23 0.41 16 6 C 0.16 4.49 7.85 134.06 1.05 5.54 16 7 N -0.48 -14.83 11.25 -192.60 -2.17 -17.00 16 8 C 0.07 2.40 10.36 84.76 0.88 3.27 16 9 C -0.08 -2.89 7.08 40.41 0.29 -2.61 16 10 C 0.60 22.08 7.80 86.31 0.67 22.76 16 11 O -0.57 -23.59 17.11 -4.54 -0.08 -23.67 16 12 N -0.60 -19.39 3.33 -816.99 -2.72 -22.11 16 13 C 0.12 3.46 6.35 86.85 0.55 4.01 16 14 C -0.10 -3.05 3.25 -9.40 -0.03 -3.08 16 15 H 0.07 2.35 8.00 -2.39 -0.02 2.33 16 16 C -0.13 -3.25 9.30 71.98 0.67 -2.58 16 17 C 0.17 6.01 3.05 46.19 0.14 6.15 16 18 H 0.08 2.57 7.99 -2.39 -0.02 2.55 16 19 N -0.72 -32.50 5.17 -317.31 -1.64 -34.15 16 20 C -0.24 -11.86 9.98 84.03 0.84 -11.02 16 21 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 23 N -0.97 -56.50 13.06 21.65 0.28 -56.22 16 24 Si 0.96 44.07 29.55 68.60 2.03 46.10 16 25 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 27 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 28 C 0.07 2.28 4.76 86.73 0.41 2.69 16 29 N -0.22 -7.27 4.04 -181.37 -0.73 -8.00 16 30 N -0.35 -10.52 10.48 -170.60 -1.79 -12.30 16 31 H 0.14 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.05 0.99 8.04 -2.39 -0.02 0.97 16 34 H 0.22 0.66 8.06 -2.91 -0.02 0.63 16 35 H 0.22 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.22 6.56 4.46 -2.91 -0.01 6.54 16 37 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 38 H 0.09 2.19 8.04 -2.38 -0.02 2.17 16 39 H 0.07 1.56 8.11 -2.39 -0.02 1.54 16 40 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.38 18.68 7.73 -92.71 -0.72 17.97 16 43 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 44 H 0.08 2.41 7.13 -2.39 -0.02 2.40 16 45 H 0.07 2.46 6.62 -2.39 -0.02 2.44 16 Total: -1.00 -75.08 378.20 0.78 -74.31 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.33 Total: 28.83 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: 8.22 Total: 29.95 kcal Atomic # 7 Polarization: -141.01 SS G_CDS: -8.77 Total: -149.77 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -1.03 Total: -29.42 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -75.08 0.78 -74.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054816237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.113 kcal (2) G-P(sol) polarization free energy of solvation -75.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds