Wall clock time and date at job start Wed Apr 1 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35727 * 116.99665 * 2 1 4 4 C 1.40450 * 119.68070 * 185.33111 * 3 2 1 5 5 C 1.36114 * 120.05375 * 180.02562 * 4 3 2 6 6 C 1.40733 * 119.30336 * 359.97438 * 5 4 3 7 7 N 1.33206 * 132.16501 * 180.02562 * 6 5 4 8 8 C 1.32250 * 109.70174 * 179.97438 * 7 6 5 9 9 C 1.38767 * 108.13527 * 0.02562 * 8 7 6 10 10 C 1.46193 * 126.76425 * 180.02562 * 9 8 7 11 11 O 1.21750 * 119.99832 * 186.51514 * 10 9 8 12 12 N 1.34777 * 119.99567 * 6.51576 * 10 9 8 13 13 C 1.47024 * 125.64424 * 185.27210 * 12 10 9 14 14 C 1.54324 * 107.27101 * 181.02644 * 13 12 10 15 15 H 1.09004 * 110.71486 * 263.82619 * 14 13 12 16 16 C 1.52995 * 110.72088 * 140.55472 * 14 13 12 17 17 C 1.55163 * 102.94240 * 22.18589 * 14 13 12 18 18 H 1.08995 * 111.03578 * 206.41448 * 17 14 13 19 19 N 1.46501 * 110.99954 * 82.57522 * 17 14 13 20 20 C 1.36939 * 119.99484 * 160.04119 * 19 17 14 21 21 H 1.07998 * 120.00069 * 354.77873 * 20 19 17 22 22 C 1.38813 * 119.99712 * 174.76619 * 20 19 17 23 23 N 1.31617 * 119.99853 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99963 * 180.27912 * 22 20 19 25 25 H 1.48498 * 109.47256 * 269.72606 * 24 22 20 26 26 H 1.48496 * 109.46986 * 29.72793 * 24 22 20 27 27 H 1.48499 * 109.47135 * 149.72721 * 24 22 20 28 28 C 1.47422 * 125.65011 * 5.22505 * 12 10 9 29 29 N 1.36463 * 119.18964 * 0.28932 * 6 5 4 30 30 N 1.31207 * 119.68501 * 5.35263 * 3 2 1 31 31 H 1.08998 * 109.47167 * 304.44543 * 1 2 3 32 32 H 1.08999 * 109.46905 * 64.44461 * 1 2 3 33 33 H 1.08997 * 109.46981 * 184.44385 * 1 2 3 34 34 H 1.08004 * 119.97000 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.34994 * 180.02562 * 5 4 3 36 36 H 1.08000 * 125.93334 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.87654 * 300.43628 * 13 12 10 38 38 H 1.08995 * 109.88547 * 61.44523 * 13 12 10 39 39 H 1.08996 * 109.47139 * 306.47297 * 16 14 13 40 40 H 1.08995 * 109.47319 * 66.47746 * 16 14 13 41 41 H 1.09006 * 109.46807 * 186.47089 * 16 14 13 42 42 H 0.97000 * 120.00182 * 340.05267 * 19 17 14 43 43 H 0.97002 * 120.00168 * 179.97438 * 23 22 20 44 44 H 1.09004 * 110.36932 * 37.07497 * 28 12 10 45 45 H 1.08991 * 110.46246 * 274.79155 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4434 1.2775 -0.1134 5 6 4.0692 2.4863 -0.1137 6 6 3.3007 3.6598 -0.0001 7 7 3.6355 4.9488 0.0267 8 6 2.5468 5.6898 0.1480 9 6 1.4505 4.8409 0.2034 10 6 0.0477 5.2308 0.3356 11 8 -0.8086 4.3795 0.4912 12 7 -0.2974 6.5327 0.2852 13 6 -1.6467 7.0707 0.5118 14 6 -1.5671 8.6007 0.3260 15 1 -1.4453 9.1000 1.2872 16 6 -2.8064 9.1226 -0.4037 17 6 -0.2986 8.7788 -0.5498 18 1 0.1517 9.7587 -0.3914 19 7 -0.6050 8.5675 -1.9667 20 6 0.2340 9.0615 -2.9296 21 1 1.0748 9.6782 -2.6485 22 6 0.0037 8.7695 -4.2670 23 7 -1.0212 8.0183 -4.6096 24 14 1.1526 9.4370 -5.5800 25 1 0.6579 10.7574 -6.0460 26 1 2.5161 9.5915 -5.0124 27 1 1.1972 8.4928 -6.7252 28 6 0.6157 7.6530 -0.0054 29 7 1.9446 3.5588 0.1139 30 7 1.3289 2.3035 0.1063 31 1 -0.3633 0.5813 0.8475 32 1 -0.3633 0.4433 -0.9271 33 1 -0.3633 -1.0246 0.0796 34 1 4.0225 0.3701 -0.2004 35 1 5.1441 2.5443 -0.2010 36 1 2.5164 6.7683 0.1965 37 1 -2.3418 6.6451 -0.2119 38 1 -1.9749 6.8344 1.5240 39 1 -2.9402 8.5699 -1.3336 40 1 -3.6840 8.9878 0.2286 41 1 -2.6780 10.1820 -0.6258 42 1 -1.4022 8.0777 -2.2228 43 1 -1.1824 7.8145 -5.5442 44 1 1.3470 7.3607 -0.7591 45 1 1.1193 7.9799 0.9042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054816245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:06 Heat of formation + Delta-G solvation = 89.788887 kcal Electronic energy + Delta-G solvation = -30730.482439 eV Core-core repulsion = 26559.300333 eV Total energy + Delta-G solvation = -4171.182107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.63086 -40.08721 -39.50896 -37.43890 -36.91012 -33.94663 -33.76645 -32.55833 -30.82010 -30.56957 -29.78031 -27.93854 -27.85966 -26.23212 -24.21659 -24.10059 -23.44336 -22.59618 -21.42778 -20.12742 -19.27638 -18.84201 -17.98729 -17.44343 -16.98318 -16.78470 -16.20468 -15.96501 -15.54808 -15.23046 -15.11487 -14.65740 -14.29023 -14.09750 -13.98879 -13.69220 -13.60536 -12.95156 -12.90449 -12.74065 -12.61501 -12.27563 -12.19851 -11.97535 -11.57249 -11.46955 -11.28402 -11.13317 -10.92797 -10.90131 -10.72830 -10.45386 -10.28565 -10.17623 -9.94881 -9.70645 -9.61506 -9.22184 -9.01897 -8.43376 -8.17036 -7.03806 -5.83269 -3.13685 0.19508 0.84190 1.45676 2.25785 2.64043 3.12229 3.20959 3.40283 3.46184 3.47787 3.53476 3.84113 3.98950 4.37969 4.52959 4.70242 4.79821 4.93947 5.02259 5.06207 5.07424 5.13170 5.29876 5.31960 5.38632 5.41935 5.50785 5.53778 5.62797 5.72364 5.82225 5.89037 5.94118 6.13852 6.17758 6.30718 6.32188 6.35643 6.46514 6.59596 6.64130 6.74447 6.89856 7.34759 7.53167 7.64728 7.81360 8.34492 8.44334 9.46401 10.01355 10.35770 11.38552 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.003550 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.634615 B = 7886.172115 C = 8879.390020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.289 6.289 3 C 0.336 3.664 4 C -0.168 4.168 5 C 0.016 3.984 6 C 0.159 3.841 7 N -0.455 5.455 8 C 0.069 3.931 9 C -0.036 4.036 10 C 0.604 3.396 11 O -0.538 6.538 12 N -0.589 5.589 13 C 0.122 3.878 14 C -0.113 4.113 15 H 0.082 0.918 16 C -0.132 4.132 17 C 0.173 3.827 18 H 0.075 0.925 19 N -0.708 5.708 20 C -0.248 4.248 21 H 0.073 0.927 22 C -0.006 4.006 23 N -0.927 5.927 24 Si 0.905 3.095 25 H -0.289 1.289 26 H -0.280 1.280 27 H -0.292 1.292 28 C 0.051 3.949 29 N -0.209 5.209 30 N -0.305 5.305 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.165 0.835 35 H 0.175 0.825 36 H 0.211 0.789 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.091 0.909 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.069 -10.332 13.121 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.190 6.190 3 C 0.127 3.873 4 C -0.194 4.194 5 C -0.011 4.011 6 C -0.086 4.086 7 N -0.175 5.175 8 C -0.092 4.092 9 C -0.158 4.158 10 C 0.392 3.608 11 O -0.416 6.416 12 N -0.322 5.322 13 C 0.000 4.000 14 C -0.133 4.133 15 H 0.100 0.900 16 C -0.190 4.190 17 C 0.060 3.940 18 H 0.093 0.907 19 N -0.349 5.349 20 C -0.379 4.379 21 H 0.091 0.909 22 C -0.203 4.203 23 N -0.574 5.574 24 Si 0.736 3.264 25 H -0.216 1.216 26 H -0.205 1.205 27 H -0.219 1.219 28 C -0.075 4.075 29 N 0.019 4.981 30 N -0.138 5.138 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.182 0.818 35 H 0.192 0.808 36 H 0.227 0.773 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.223 0.777 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.607 -10.740 13.098 17.842 hybrid contribution 0.159 -0.351 -1.020 1.090 sum 5.766 -11.092 12.078 17.382 Atomic orbital electron populations 1.23145 0.75810 1.04014 1.03802 1.86359 1.24044 1.21254 1.87316 1.20711 0.90698 0.85623 0.90299 1.20843 0.91476 1.00029 1.07072 1.20457 1.01357 0.86900 0.92341 1.21242 0.81956 0.95186 1.10204 1.70461 1.29427 0.98261 1.19341 1.23954 0.85480 1.00544 0.99234 1.20867 0.96614 0.80127 1.18196 1.15979 0.85163 0.81705 0.77921 1.90834 1.50685 1.49285 1.50799 1.47848 1.11201 1.04608 1.68532 1.21974 0.83681 0.93763 1.00593 1.22516 0.97680 0.93538 0.99552 0.89968 1.21601 0.95082 1.01892 1.00388 1.21382 0.91511 0.95128 0.85986 0.90717 1.42396 1.28466 1.65843 0.98201 1.19222 1.06958 1.25043 0.86693 0.90872 1.24763 0.98304 0.99930 0.97324 1.69667 1.29843 1.41224 1.16703 0.86229 0.80406 0.78008 0.81774 1.21642 1.20546 1.21883 1.23875 0.95212 0.88998 0.99395 1.45751 1.06231 1.02976 1.43094 1.75730 1.22961 0.87801 1.27357 0.91100 0.91501 0.87601 0.81755 0.80814 0.77305 0.91221 0.92088 0.91293 0.93650 0.92020 0.77738 0.93419 0.89132 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.49 101.05 1.06 1.33 16 2 O -0.29 -3.24 10.49 -18.89 -0.20 -3.43 16 3 C 0.34 4.36 7.59 -16.99 -0.13 4.23 16 4 C -0.17 -1.63 9.97 -39.51 -0.39 -2.02 16 5 C 0.02 0.17 10.10 -39.40 -0.40 -0.23 16 6 C 0.16 2.44 7.85 -156.14 -1.23 1.21 16 7 N -0.45 -7.38 11.25 -12.23 -0.14 -7.52 16 8 C 0.07 1.13 10.20 -17.18 -0.18 0.96 16 9 C -0.04 -0.67 7.05 -81.85 -0.58 -1.25 16 10 C 0.60 12.06 7.79 -13.07 -0.10 11.96 16 11 O -0.54 -12.13 17.16 5.14 0.09 -12.04 16 12 N -0.59 -10.48 3.33 -172.23 -0.57 -11.05 16 13 C 0.12 1.99 6.46 -3.06 -0.02 1.97 16 14 C -0.11 -1.66 3.42 -88.78 -0.30 -1.96 16 15 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.13 -1.99 8.71 37.15 0.32 -1.67 16 17 C 0.17 3.01 3.44 -65.78 -0.23 2.78 16 18 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 19 N -0.71 -16.26 4.70 -51.35 -0.24 -16.50 16 20 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 23 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 24 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 28 C 0.05 0.82 4.80 -2.53 -0.01 0.81 16 29 N -0.21 -3.71 4.04 -8.68 -0.04 -3.75 16 30 N -0.30 -5.13 10.41 30.56 0.32 -4.81 16 31 H 0.07 0.80 7.90 -51.93 -0.41 0.39 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.21 2.91 4.79 -52.49 -0.25 2.66 16 37 H 0.07 1.27 7.76 -51.93 -0.40 0.87 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.24 6.38 -51.93 -0.33 0.91 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.39 9.76 6.15 -40.82 -0.25 9.51 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.09 1.62 5.87 -51.93 -0.30 1.31 16 45 H 0.06 0.80 7.76 -51.93 -0.40 0.39 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -35.18 374.52 -7.56 -42.75 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.71 Total: 9.31 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -2.43 Total: 11.29 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: 0.06 Total: -70.32 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.11 Total: -15.48 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.18 -7.56 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054816245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.535 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds