Wall clock time and date at job start Wed Apr 1 2020 02:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35727 * 116.99665 * 2 1 4 4 C 1.40450 * 119.68070 * 185.33111 * 3 2 1 5 5 C 1.36114 * 120.05375 * 180.02562 * 4 3 2 6 6 C 1.40733 * 119.30336 * 359.97438 * 5 4 3 7 7 N 1.33206 * 132.16501 * 180.02562 * 6 5 4 8 8 C 1.32250 * 109.70174 * 179.97438 * 7 6 5 9 9 C 1.38767 * 108.13527 * 0.02562 * 8 7 6 10 10 C 1.46193 * 126.76425 * 180.02562 * 9 8 7 11 11 O 1.21750 * 119.99832 * 186.51514 * 10 9 8 12 12 N 1.34777 * 119.99567 * 6.51576 * 10 9 8 13 13 C 1.47024 * 125.64424 * 185.27210 * 12 10 9 14 14 C 1.54324 * 107.27101 * 181.02644 * 13 12 10 15 15 H 1.09004 * 110.71486 * 263.82619 * 14 13 12 16 16 C 1.52995 * 110.72088 * 140.55472 * 14 13 12 17 17 C 1.55163 * 102.94240 * 22.18589 * 14 13 12 18 18 H 1.08995 * 111.03578 * 206.41448 * 17 14 13 19 19 N 1.46501 * 110.99954 * 82.57522 * 17 14 13 20 20 C 1.36939 * 119.99484 * 160.04119 * 19 17 14 21 21 H 1.07998 * 120.00069 * 354.77873 * 20 19 17 22 22 C 1.38813 * 119.99712 * 174.76619 * 20 19 17 23 23 N 1.31617 * 119.99853 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99963 * 180.27912 * 22 20 19 25 25 H 1.48498 * 109.47256 * 269.72606 * 24 22 20 26 26 H 1.48496 * 109.46986 * 29.72793 * 24 22 20 27 27 H 1.48499 * 109.47135 * 149.72721 * 24 22 20 28 28 C 1.47422 * 125.65011 * 5.22505 * 12 10 9 29 29 N 1.36463 * 119.18964 * 0.28932 * 6 5 4 30 30 N 1.31207 * 119.68501 * 5.35263 * 3 2 1 31 31 H 1.08998 * 109.47167 * 304.44543 * 1 2 3 32 32 H 1.08999 * 109.46905 * 64.44461 * 1 2 3 33 33 H 1.08997 * 109.46981 * 184.44385 * 1 2 3 34 34 H 1.08004 * 119.97000 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.34994 * 180.02562 * 5 4 3 36 36 H 1.08000 * 125.93334 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.87654 * 300.43628 * 13 12 10 38 38 H 1.08995 * 109.88547 * 61.44523 * 13 12 10 39 39 H 1.08996 * 109.47139 * 306.47297 * 16 14 13 40 40 H 1.08995 * 109.47319 * 66.47746 * 16 14 13 41 41 H 1.09006 * 109.46807 * 186.47089 * 16 14 13 42 42 H 0.97000 * 120.00182 * 340.05267 * 19 17 14 43 43 H 0.97002 * 120.00168 * 179.97438 * 23 22 20 44 44 H 1.09004 * 110.36932 * 37.07497 * 28 12 10 45 45 H 1.08991 * 110.46246 * 274.79155 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4434 1.2775 -0.1134 5 6 4.0692 2.4863 -0.1137 6 6 3.3007 3.6598 -0.0001 7 7 3.6355 4.9488 0.0267 8 6 2.5468 5.6898 0.1480 9 6 1.4505 4.8409 0.2034 10 6 0.0477 5.2308 0.3356 11 8 -0.8086 4.3795 0.4912 12 7 -0.2974 6.5327 0.2852 13 6 -1.6467 7.0707 0.5118 14 6 -1.5671 8.6007 0.3260 15 1 -1.4453 9.1000 1.2872 16 6 -2.8064 9.1226 -0.4037 17 6 -0.2986 8.7788 -0.5498 18 1 0.1517 9.7587 -0.3914 19 7 -0.6050 8.5675 -1.9667 20 6 0.2340 9.0615 -2.9296 21 1 1.0748 9.6782 -2.6485 22 6 0.0037 8.7695 -4.2670 23 7 -1.0212 8.0183 -4.6096 24 14 1.1526 9.4370 -5.5800 25 1 0.6579 10.7574 -6.0460 26 1 2.5161 9.5915 -5.0124 27 1 1.1972 8.4928 -6.7252 28 6 0.6157 7.6530 -0.0054 29 7 1.9446 3.5588 0.1139 30 7 1.3289 2.3035 0.1063 31 1 -0.3633 0.5813 0.8475 32 1 -0.3633 0.4433 -0.9271 33 1 -0.3633 -1.0246 0.0796 34 1 4.0225 0.3701 -0.2004 35 1 5.1441 2.5443 -0.2010 36 1 2.5164 6.7683 0.1965 37 1 -2.3418 6.6451 -0.2119 38 1 -1.9749 6.8344 1.5240 39 1 -2.9402 8.5699 -1.3336 40 1 -3.6840 8.9878 0.2286 41 1 -2.6780 10.1820 -0.6258 42 1 -1.4022 8.0777 -2.2228 43 1 -1.1824 7.8145 -5.5442 44 1 1.3470 7.3607 -0.7591 45 1 1.1193 7.9799 0.9042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054816245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:05 Heat of formation + Delta-G solvation = 62.785966 kcal Electronic energy + Delta-G solvation = -30731.653374 eV Core-core repulsion = 26559.300333 eV Total energy + Delta-G solvation = -4172.353041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.78508 -41.22918 -40.73703 -38.91680 -37.93872 -35.68008 -34.83788 -34.05808 -32.33894 -31.89101 -30.95823 -29.44538 -28.87627 -27.44905 -25.90255 -25.26402 -24.71395 -23.86157 -22.70662 -21.36931 -20.66036 -19.81119 -19.45324 -19.02796 -18.22431 -17.88632 -17.44078 -17.19786 -16.85239 -16.53553 -16.36087 -16.08958 -15.68024 -15.44549 -15.23439 -14.93954 -14.62797 -14.57518 -14.28008 -13.97504 -13.78569 -13.59962 -13.39414 -13.08613 -12.97323 -12.85792 -12.81192 -12.55095 -12.42684 -12.27485 -12.12510 -11.91160 -11.81261 -11.47403 -11.39223 -11.31815 -11.07228 -10.92063 -10.35746 -9.80782 -9.44266 -8.92912 -7.91042 -5.18629 -0.73807 -0.30967 0.34196 1.07762 1.48877 1.50048 1.57623 1.64879 1.95130 2.07616 2.14244 2.58482 2.83212 2.91939 3.40052 3.43450 3.54991 3.71150 3.84728 3.90397 3.95566 4.02767 4.13515 4.18071 4.21561 4.33791 4.41119 4.47507 4.59557 4.63843 4.66711 4.68408 4.76065 4.86476 4.87125 4.98378 5.02624 5.15220 5.21719 5.26851 5.41456 5.56801 5.63024 5.67666 6.25007 6.30529 6.33239 6.40226 6.99789 7.37803 8.14475 8.35539 9.32631 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.003550 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.634615 B = 7886.172115 C = 8879.390020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.280 6.280 3 C 0.333 3.667 4 C -0.144 4.144 5 C 0.013 3.987 6 C 0.159 3.841 7 N -0.470 5.470 8 C 0.080 3.920 9 C -0.084 4.084 10 C 0.596 3.404 11 O -0.582 6.582 12 N -0.590 5.590 13 C 0.119 3.881 14 C -0.096 4.096 15 H 0.127 0.873 16 C -0.127 4.127 17 C 0.160 3.840 18 H 0.098 0.902 19 N -0.723 5.723 20 C -0.229 4.229 21 H 0.089 0.911 22 C -0.077 4.077 23 N -0.973 5.973 24 Si 0.964 3.036 25 H -0.287 1.287 26 H -0.264 1.264 27 H -0.309 1.309 28 C 0.057 3.943 29 N -0.225 5.225 30 N -0.356 5.356 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.146 0.854 34 H 0.216 0.784 35 H 0.221 0.779 36 H 0.229 0.771 37 H 0.038 0.962 38 H 0.080 0.920 39 H 0.029 0.971 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.371 0.629 43 H 0.245 0.755 44 H 0.072 0.928 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.929 -10.444 14.924 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.180 6.180 3 C 0.124 3.876 4 C -0.169 4.169 5 C -0.013 4.013 6 C -0.087 4.087 7 N -0.191 5.191 8 C -0.082 4.082 9 C -0.204 4.204 10 C 0.385 3.615 11 O -0.464 6.464 12 N -0.321 5.321 13 C -0.003 4.003 14 C -0.115 4.115 15 H 0.145 0.855 16 C -0.185 4.185 17 C 0.050 3.950 18 H 0.115 0.885 19 N -0.361 5.361 20 C -0.361 4.361 21 H 0.107 0.893 22 C -0.269 4.269 23 N -0.624 5.624 24 Si 0.794 3.206 25 H -0.214 1.214 26 H -0.188 1.188 27 H -0.236 1.236 28 C -0.067 4.067 29 N 0.004 4.996 30 N -0.191 5.191 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.164 0.836 34 H 0.233 0.767 35 H 0.237 0.763 36 H 0.245 0.755 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.204 0.796 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.502 -10.797 14.961 20.315 hybrid contribution -0.710 -0.458 -1.476 1.701 sum 7.792 -11.256 13.485 19.216 Atomic orbital electron populations 1.23264 0.75299 1.06038 1.02138 1.86395 1.24501 1.20282 1.86848 1.21339 0.92309 0.85225 0.88677 1.21416 0.89871 1.01683 1.03965 1.21112 1.03158 0.85189 0.91798 1.22161 0.81718 0.96402 1.08371 1.70486 1.29175 0.98769 1.20637 1.24215 0.84892 1.01164 0.97929 1.20841 0.96304 0.81357 1.21927 1.16344 0.85757 0.81955 0.77419 1.90782 1.51967 1.50448 1.53178 1.47963 1.11988 1.04475 1.67670 1.22082 0.82724 0.94832 1.00671 1.22524 0.95941 0.92300 1.00723 0.85505 1.21537 0.96609 1.01167 0.99177 1.21751 0.93456 0.96332 0.83470 0.88476 1.42606 1.27643 1.65492 1.00404 1.19710 1.06393 1.22819 0.87140 0.89297 1.25500 1.00091 1.01589 0.99670 1.69846 1.32331 1.44173 1.16067 0.85267 0.79470 0.76840 0.79015 1.21438 1.18828 1.23641 1.23883 0.94330 0.87540 1.00973 1.45867 1.07060 1.03034 1.43643 1.75647 1.25005 0.88483 1.29979 0.92910 0.93142 0.83573 0.76738 0.76268 0.75537 0.94394 0.90192 0.95219 0.91078 0.91870 0.79565 0.94603 0.91007 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.49 113.37 1.19 1.73 16 2 O -0.28 -5.86 10.49 -90.50 -0.95 -6.81 16 3 C 0.33 8.25 7.59 85.33 0.65 8.90 16 4 C -0.14 -2.28 9.97 22.31 0.22 -2.06 16 5 C 0.01 0.23 10.10 22.39 0.23 0.46 16 6 C 0.16 4.72 7.85 134.06 1.05 5.78 16 7 N -0.47 -14.79 11.25 -192.61 -2.17 -16.96 16 8 C 0.08 2.58 10.20 84.76 0.86 3.44 16 9 C -0.08 -3.21 7.05 40.42 0.28 -2.92 16 10 C 0.60 24.85 7.79 86.31 0.67 25.52 16 11 O -0.58 -28.02 17.16 -4.51 -0.08 -28.09 16 12 N -0.59 -21.15 3.33 -817.02 -2.72 -23.86 16 13 C 0.12 3.88 6.46 86.73 0.56 4.44 16 14 C -0.10 -2.61 3.42 -9.60 -0.03 -2.65 16 15 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 16 C -0.13 -3.74 8.71 71.98 0.63 -3.12 16 17 C 0.16 5.30 3.44 46.39 0.16 5.46 16 18 H 0.10 2.85 8.12 -2.39 -0.02 2.83 16 19 N -0.72 -33.41 4.70 -316.36 -1.49 -34.90 16 20 C -0.23 -11.79 9.98 84.03 0.84 -10.95 16 21 H 0.09 4.22 7.83 -2.91 -0.02 4.20 16 22 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 23 N -0.97 -60.06 13.06 21.65 0.28 -59.78 16 24 Si 0.96 45.61 29.55 68.60 2.03 47.64 16 25 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 26 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.31 -15.29 7.11 99.48 0.71 -14.59 16 28 C 0.06 1.76 4.80 86.86 0.42 2.17 16 29 N -0.22 -8.15 4.04 -181.37 -0.73 -8.88 16 30 N -0.36 -12.27 10.41 -170.59 -1.78 -14.05 16 31 H 0.05 1.25 7.90 -2.39 -0.02 1.23 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.15 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.22 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.23 6.04 4.79 -2.91 -0.01 6.03 16 37 H 0.04 1.47 7.76 -2.39 -0.02 1.45 16 38 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 39 H 0.03 1.10 6.38 -2.39 -0.02 1.09 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.37 19.53 6.15 -92.71 -0.57 18.96 16 43 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.07 2.52 5.87 -2.39 -0.01 2.50 16 45 H 0.11 2.39 7.76 -2.39 -0.02 2.37 16 Total: -1.00 -83.70 374.52 1.07 -82.63 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.47 Total: 30.70 kcal Atomic # 6 Polarization: 24.17 SS G_CDS: 8.20 Total: 32.37 kcal Atomic # 7 Polarization: -149.83 SS G_CDS: -8.60 Total: -158.43 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.03 Total: -34.90 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -83.70 1.07 -82.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054816245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.414 kcal (2) G-P(sol) polarization free energy of solvation -83.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds