Wall clock time and date at job start Wed Apr 1 2020 02:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 110.64375 * 2 1 4 4 C 1.54337 * 110.84779 * 236.83745 * 2 1 3 5 5 N 1.47023 * 107.26376 * 219.67154 * 4 2 1 6 6 C 1.34785 * 125.65026 * 178.84949 * 5 4 2 7 7 O 1.21286 * 119.99498 * 359.71370 * 6 5 4 8 8 C 1.50700 * 120.00251 * 179.71608 * 6 5 4 9 9 N 1.46492 * 109.46924 * 179.97438 * 8 6 5 10 10 N 1.40168 * 126.21072 * 269.97691 * 9 8 6 11 11 C 1.31263 * 107.88532 * 180.02562 * 10 9 8 12 12 C 1.41798 * 132.01023 * 180.02562 * 11 10 9 13 13 C 1.35524 * 119.32334 * 179.70489 * 12 11 10 14 14 C 1.40996 * 119.86436 * 0.26186 * 13 12 11 15 15 C 1.34455 * 120.59410 * 359.97438 * 14 13 12 16 16 N 1.37460 * 120.68393 * 359.97438 * 15 14 13 17 17 C 1.34829 * 131.80174 * 180.02562 * 16 15 14 18 18 O 1.21888 * 126.05483 * 359.97438 * 17 16 15 19 19 C 1.47425 * 108.70325 * 358.58540 * 5 4 2 20 20 C 1.54906 * 104.83490 * 24.35579 * 19 5 4 21 21 H 1.08996 * 111.00036 * 81.06180 * 20 19 5 22 22 N 1.46498 * 111.00553 * 204.91769 * 20 19 5 23 23 C 1.36934 * 119.99957 * 273.54618 * 22 20 19 24 24 H 1.08005 * 120.00092 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00059 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99935 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00002 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47121 * 59.99866 * 27 25 23 29 29 H 1.48505 * 109.47141 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47194 * 299.99669 * 27 25 23 31 31 H 1.09006 * 109.47256 * 296.85584 * 1 2 3 32 32 H 1.08999 * 109.47355 * 56.85707 * 1 2 3 33 33 H 1.09007 * 109.47333 * 176.86047 * 1 2 3 34 34 H 1.08999 * 109.99380 * 100.20172 * 4 2 1 35 35 H 1.08996 * 109.77982 * 339.02862 * 4 2 1 36 36 H 1.09000 * 109.46649 * 60.00060 * 8 6 5 37 37 H 1.08997 * 109.47005 * 300.00493 * 8 6 5 38 38 H 1.08002 * 120.34002 * 359.97438 * 12 11 10 39 39 H 1.08006 * 120.07013 * 180.23475 * 13 12 11 40 40 H 1.07999 * 119.70667 * 179.97438 * 14 13 12 41 41 H 1.08003 * 119.65514 * 180.02562 * 15 14 13 42 42 H 1.08997 * 110.36509 * 143.19893 * 19 5 4 43 43 H 1.09004 * 110.36272 * 265.40579 * 19 5 4 44 44 H 0.96997 * 119.99706 * 93.55020 * 22 20 19 45 45 H 0.97001 * 119.99860 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0792 -0.7890 -1.2074 5 7 3.2444 -1.5519 -0.7365 6 6 3.9922 -2.3861 -1.4859 7 8 3.7191 -2.5608 -2.6546 8 6 5.1677 -3.1017 -0.8716 9 7 5.8110 -3.9424 -1.8842 10 7 5.5007 -5.2791 -2.1695 11 6 6.2943 -5.6800 -3.1352 12 6 6.4170 -6.9216 -3.8089 13 6 7.3396 -7.0546 -4.7926 14 6 8.1676 -5.9646 -5.1308 15 6 8.0507 -4.7906 -4.4858 16 7 7.1222 -4.6295 -3.4851 17 6 6.8161 -3.5734 -2.7047 18 8 7.3464 -2.4766 -2.7416 19 6 3.4632 -1.2486 0.6895 20 6 2.0789 -0.7934 1.2151 21 1 1.4452 -1.6512 1.4402 22 7 2.2215 0.0736 2.3873 23 6 2.3175 -0.4761 3.6378 24 1 2.2878 -1.5488 3.7600 25 6 2.4521 0.3455 4.7486 26 7 2.4878 1.6527 4.5999 27 14 2.5824 -0.4043 6.4546 28 1 3.7732 -1.2895 6.5166 29 1 2.7179 0.6782 7.4621 30 1 1.3604 -1.1978 6.7412 31 1 -0.3634 0.4643 0.9169 32 1 -0.3634 0.5618 -0.8605 33 1 -0.3634 -1.0262 -0.0563 34 1 2.3813 -0.1003 -1.9964 35 1 1.3154 -1.4713 -1.5805 36 1 4.8226 -3.7260 -0.0474 37 1 5.8838 -2.3698 -0.4980 38 1 5.7788 -7.7516 -3.5438 39 1 7.4409 -7.9938 -5.3163 40 1 8.9022 -6.0735 -5.9148 41 1 8.6924 -3.9655 -4.7574 42 1 3.7960 -2.1405 1.2203 43 1 4.1946 -0.4478 0.7991 44 1 2.2478 1.0370 2.2777 45 1 2.5822 2.2268 5.3760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054952293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:49 Heat of formation + Delta-G solvation = 47.469845 kcal Electronic energy + Delta-G solvation = -29714.913522 eV Core-core repulsion = 25541.896324 eV Total energy + Delta-G solvation = -4173.017198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.13845 -41.31780 -39.62686 -38.98955 -38.18377 -35.89782 -34.98283 -34.15969 -33.60049 -32.51526 -30.46344 -29.52430 -29.14989 -27.28918 -25.90533 -25.03130 -24.14708 -23.29454 -22.89540 -21.38755 -20.65481 -19.57262 -19.11122 -18.80052 -18.51939 -17.83387 -17.74626 -17.27380 -16.84698 -16.52743 -16.20602 -15.94277 -15.77850 -15.52411 -15.30222 -14.63224 -14.55401 -14.54704 -14.35691 -14.27225 -13.80913 -13.50871 -13.30992 -13.15418 -13.09130 -13.02285 -12.89577 -12.79978 -12.67982 -12.25686 -12.19391 -12.01191 -11.71729 -11.65681 -11.60959 -11.49733 -11.38303 -10.94552 -10.55809 -9.82896 -9.04510 -8.79713 -7.92872 -5.22742 -0.43288 0.31530 0.51579 1.20563 1.30588 1.51982 1.53143 1.58981 1.70417 1.97051 2.40298 2.57901 2.91172 3.17106 3.38251 3.61868 3.66366 3.71750 3.77182 3.90121 3.93689 3.96305 4.05965 4.14375 4.22790 4.33963 4.44147 4.53358 4.59218 4.63066 4.66503 4.84119 4.86015 4.94085 5.03414 5.07782 5.10232 5.13267 5.26096 5.31389 5.37267 5.44141 5.56927 5.65273 6.26694 6.28010 6.29697 6.59107 6.85259 7.35760 8.06435 8.30825 9.29649 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016073 B = 0.002345 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.636834 B =11937.015340 C =12794.673681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 H 0.079 0.921 4 C 0.120 3.880 5 N -0.605 5.605 6 C 0.511 3.489 7 O -0.577 6.577 8 C 0.145 3.855 9 N -0.423 5.423 10 N -0.316 5.316 11 C 0.291 3.709 12 C -0.140 4.140 13 C -0.019 4.019 14 C -0.151 4.151 15 C 0.083 3.917 16 N -0.482 5.482 17 C 0.634 3.366 18 O -0.580 6.580 19 C 0.076 3.924 20 C 0.173 3.827 21 H 0.068 0.932 22 N -0.719 5.719 23 C -0.240 4.240 24 H 0.082 0.918 25 C -0.069 4.069 26 N -0.966 5.966 27 Si 0.968 3.032 28 H -0.277 1.277 29 H -0.301 1.301 30 H -0.279 1.279 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.155 0.845 37 H 0.137 0.863 38 H 0.180 0.820 39 H 0.198 0.802 40 H 0.200 0.800 41 H 0.176 0.824 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.377 0.623 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.457 -19.598 -20.674 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.122 4.122 3 H 0.098 0.902 4 C -0.003 4.003 5 N -0.338 5.338 6 C 0.299 3.701 7 O -0.458 6.458 8 C 0.020 3.980 9 N -0.239 5.239 10 N -0.143 5.143 11 C 0.027 3.973 12 C -0.162 4.162 13 C -0.043 4.043 14 C -0.173 4.173 15 C -0.034 4.034 16 N -0.196 5.196 17 C 0.334 3.666 18 O -0.455 6.455 19 C -0.049 4.049 20 C 0.062 3.938 21 H 0.086 0.914 22 N -0.358 5.358 23 C -0.372 4.372 24 H 0.100 0.900 25 C -0.262 4.262 26 N -0.616 5.616 27 Si 0.798 3.202 28 H -0.203 1.203 29 H -0.228 1.228 30 H -0.205 1.205 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.173 0.827 37 H 0.154 0.846 38 H 0.197 0.803 39 H 0.215 0.785 40 H 0.216 0.784 41 H 0.193 0.807 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.209 0.791 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.853 -19.131 -20.349 29.300 hybrid contribution 0.534 1.154 0.875 1.543 sum 9.388 -17.978 -19.474 28.117 Atomic orbital electron populations 1.21622 0.92442 1.02400 1.02161 1.22391 0.97608 0.99126 0.93068 0.90239 1.22028 0.87183 0.94314 0.96736 1.48466 1.29949 1.43082 1.12340 1.20810 0.84091 0.79229 0.85964 1.90677 1.71840 1.65374 1.17873 1.21444 0.93820 0.94249 0.88446 1.48289 1.31197 1.09925 1.34485 1.77745 1.24309 0.92406 1.19855 1.22392 0.88958 0.91785 0.94171 1.20752 1.04454 0.92147 0.98828 1.21837 0.89660 1.00572 0.92280 1.21452 1.03166 0.90364 1.02330 1.22293 0.91251 1.02182 0.87707 1.43575 1.32056 1.12585 1.31385 1.16709 0.83558 0.84112 0.82228 1.91075 1.60317 1.20979 1.73175 1.23411 1.01660 1.01483 0.78337 1.21489 0.92535 0.93556 0.86193 0.91398 1.42388 1.87012 1.05099 1.01327 1.19570 1.40745 0.92298 0.84593 0.90039 1.25498 1.03542 0.95738 1.01427 1.69799 1.58728 1.03228 1.29884 0.85297 0.78204 0.76762 0.79985 1.20310 1.22767 1.20478 0.93016 0.90987 0.91945 0.91782 0.90758 0.82705 0.84563 0.80268 0.78483 0.78351 0.80704 0.89404 0.91590 0.79055 0.94089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.16 71.98 0.66 -2.82 16 2 C -0.10 -3.11 3.16 -9.60 -0.03 -3.14 16 3 H 0.08 2.54 7.99 -2.39 -0.02 2.52 16 4 C 0.12 3.60 6.48 86.73 0.56 4.16 16 5 N -0.61 -19.29 3.33 -811.76 -2.70 -21.99 16 6 C 0.51 17.61 7.92 87.66 0.69 18.30 16 7 O -0.58 -24.11 16.76 -3.05 -0.05 -24.16 16 8 C 0.14 4.20 5.86 85.63 0.50 4.71 16 9 N -0.42 -13.64 3.11 -481.79 -1.50 -15.14 16 10 N -0.32 -9.30 12.62 -54.72 -0.69 -9.99 16 11 C 0.29 6.75 7.87 134.32 1.06 7.81 16 12 C -0.14 -1.65 10.12 22.52 0.23 -1.42 16 13 C -0.02 -0.08 10.06 22.32 0.22 0.14 16 14 C -0.15 -0.87 9.97 22.08 0.22 -0.65 16 15 C 0.08 1.26 10.90 82.94 0.90 2.16 16 16 N -0.48 -12.14 2.93 -482.31 -1.41 -13.55 16 17 C 0.63 21.37 8.70 179.00 1.56 22.92 16 18 O -0.58 -22.81 17.86 -4.95 -0.09 -22.90 16 19 C 0.08 2.46 6.38 86.85 0.55 3.01 16 20 C 0.17 6.16 3.14 46.38 0.15 6.30 16 21 H 0.07 2.44 8.03 -2.39 -0.02 2.42 16 22 N -0.72 -32.89 5.28 -316.38 -1.67 -34.56 16 23 C -0.24 -12.24 9.98 84.03 0.84 -11.40 16 24 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 25 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 26 N -0.97 -56.55 13.06 21.65 0.28 -56.26 16 27 Si 0.97 44.05 29.55 68.60 2.03 46.08 16 28 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 29 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 30 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 31 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.57 8.07 -2.38 -0.02 1.55 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 2.14 7.77 -2.39 -0.02 2.12 16 36 H 0.16 3.60 7.85 -2.39 -0.02 3.58 16 37 H 0.14 3.67 8.09 -2.39 -0.02 3.65 16 38 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.20 -0.97 8.06 -2.91 -0.02 -0.99 16 40 H 0.20 -0.56 8.06 -2.91 -0.02 -0.58 16 41 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 42 H 0.09 2.54 7.48 -2.39 -0.02 2.53 16 43 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.38 18.81 7.71 -92.71 -0.71 18.10 16 45 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -81.90 384.93 3.09 -78.81 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.31 Total: 26.86 kcal Atomic # 6 Polarization: 38.21 SS G_CDS: 8.58 Total: 46.79 kcal Atomic # 7 Polarization: -143.80 SS G_CDS: -7.69 Total: -151.49 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -0.14 Total: -47.06 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -81.90 3.09 -78.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054952293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.279 kcal (2) G-P(sol) polarization free energy of solvation -81.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds