Wall clock time and date at job start Wed Apr 1 2020 03:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47549 * 2 1 4 4 C 1.50699 * 109.47213 * 239.99475 * 2 1 3 5 5 O 1.21283 * 120.00055 * 240.00672 * 4 2 1 6 6 N 1.34776 * 119.99896 * 59.99946 * 4 2 1 7 7 C 1.46496 * 120.00084 * 179.97438 * 6 4 2 8 8 H 1.09008 * 110.91253 * 37.45558 * 7 6 4 9 9 C 1.54908 * 111.00674 * 273.55347 * 7 6 4 10 10 N 1.47425 * 104.92961 * 204.86080 * 9 7 6 11 11 C 1.36938 * 125.65179 * 204.15650 * 10 9 7 12 12 H 1.07995 * 120.00281 * 180.02562 * 11 10 9 13 13 C 1.38810 * 119.99650 * 0.02562 * 11 10 9 14 14 N 1.31621 * 120.00025 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00113 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47166 * 59.99694 * 15 13 11 17 17 H 1.48493 * 109.47565 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47135 * 300.00010 * 15 13 11 19 19 C 1.47290 * 108.55742 * 24.15407 * 10 9 7 20 20 C 1.54325 * 107.30599 * 358.92448 * 19 10 9 21 21 H 1.09002 * 110.72180 * 219.45147 * 20 19 10 22 22 N 1.46496 * 110.87283 * 96.25220 * 20 19 10 23 23 C 1.35320 * 125.86681 * 331.10882 * 22 20 19 24 24 C 1.35347 * 106.17331 * 179.90455 * 23 22 20 25 25 N 1.33766 * 106.49911 * 0.34728 * 24 23 22 26 26 N 1.28629 * 108.88624 * 359.77555 * 25 24 23 27 27 C 1.50705 * 109.46765 * 119.99897 * 2 1 3 28 28 C 1.34511 * 125.79085 * 239.71467 * 27 2 1 29 29 C 1.41380 * 106.84293 * 179.89242 * 28 27 2 30 30 C 1.34507 * 106.84134 * 0.36839 * 29 28 27 31 31 O 1.34302 * 108.42144 * 359.77464 * 30 29 28 32 32 H 1.08991 * 109.47549 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47009 * 300.00638 * 1 2 3 34 34 H 1.08996 * 109.46678 * 59.99946 * 1 2 3 35 35 H 0.97000 * 119.99844 * 0.02562 * 6 4 2 36 36 H 1.09002 * 110.36632 * 323.75475 * 9 7 6 37 37 H 1.08995 * 110.36781 * 85.96712 * 9 7 6 38 38 H 0.97001 * 119.99611 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.85762 * 239.50064 * 19 10 9 40 40 H 1.08999 * 109.87327 * 118.35916 * 19 10 9 41 41 H 1.08003 * 126.91015 * 0.02562 * 23 22 20 42 42 H 1.08003 * 126.75005 * 180.12357 * 24 23 22 43 43 H 1.08006 * 126.57626 * 0.02562 * 28 27 2 44 44 H 1.07999 * 126.58015 * 180.16742 * 29 28 27 45 45 H 1.08000 * 125.78949 * 179.75968 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6967 -1.1190 6 7 1.7068 -0.2502 -2.4545 7 6 2.1956 -0.9405 -3.6506 8 1 2.2011 -2.0203 -3.5017 9 6 3.6012 -0.4281 -4.0521 10 7 3.7059 -0.6992 -5.4974 11 6 4.8721 -0.8593 -6.1971 12 1 4.8424 -1.0552 -7.2587 13 6 6.0924 -0.7696 -5.5417 14 7 6.1286 -0.5312 -4.2478 15 14 7.6834 -0.9871 -6.4962 16 1 7.7693 0.0478 -7.5577 17 1 8.8379 -0.8456 -5.5730 18 1 7.7078 -2.3360 -7.1168 19 6 2.3468 -0.7689 -6.0608 20 6 1.3559 -0.5554 -4.8972 21 1 0.4932 -1.2137 -4.9995 22 7 0.9311 0.8447 -4.8236 23 6 1.6595 1.9159 -5.2149 24 6 0.8906 3.0032 -4.9735 25 7 -0.2524 2.5507 -4.4461 26 7 -0.1969 1.2679 -4.3705 27 6 2.0323 -0.7104 1.2305 28 6 2.8132 -0.1736 2.1851 29 6 3.0386 -1.1851 3.1469 30 6 2.3886 -2.2820 2.7184 31 8 1.7808 -1.9887 1.5572 32 1 -0.3634 -1.0275 -0.0005 33 1 -0.3633 0.5140 0.8900 34 1 -0.3632 0.5138 -0.8900 35 1 1.1494 0.5387 -2.5436 36 1 3.6843 0.6416 -3.8598 37 1 4.3730 -0.9717 -3.5073 38 1 6.9815 -0.4682 -3.7899 39 1 2.1829 -1.7473 -6.5125 40 1 2.2150 0.0135 -6.8083 41 1 2.6536 1.9051 -5.6370 42 1 1.1503 4.0339 -5.1654 43 1 3.1933 0.8370 2.2128 44 1 3.6233 -1.0954 4.0504 45 1 2.3604 -3.2367 3.2225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070024449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:50 Heat of formation + Delta-G solvation = 124.580343 kcal Electronic energy + Delta-G solvation = -31226.236618 eV Core-core repulsion = 27056.563182 eV Total energy + Delta-G solvation = -4169.673436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.11368 -42.50618 -39.70157 -37.90546 -34.35318 -34.10479 -33.43988 -32.76625 -31.76552 -30.72088 -29.03280 -28.46969 -27.55913 -25.15979 -24.44798 -22.72540 -22.40837 -21.71794 -21.40005 -20.32021 -20.19310 -19.71721 -18.00326 -17.33208 -17.14820 -16.81364 -15.95619 -15.69966 -15.47084 -15.17505 -14.72020 -14.69603 -14.35793 -14.06197 -13.82469 -13.47996 -13.35502 -12.98122 -12.75026 -12.73712 -12.63236 -12.51052 -12.35125 -11.94019 -11.70588 -11.63068 -11.50378 -11.35793 -11.03543 -10.84096 -10.74621 -10.53038 -10.23583 -9.99289 -9.86762 -9.83709 -9.58997 -9.13237 -8.85869 -8.72197 -8.40430 -7.14953 -5.84398 -3.31741 1.79307 1.83411 2.49893 2.66131 2.77577 2.83028 3.04221 3.30247 3.33106 3.36221 3.37566 4.28519 4.47739 4.49803 4.65605 4.74434 4.86054 4.88652 5.00194 5.03489 5.12415 5.22018 5.30841 5.36974 5.46611 5.51297 5.52149 5.60016 5.74339 5.80466 5.85578 5.91417 5.98271 6.03475 6.08975 6.15061 6.16211 6.37000 6.54280 6.55099 6.87856 7.12946 7.22944 7.37348 7.60318 7.68198 8.11076 8.41656 8.71018 8.96456 9.57233 10.14825 11.18207 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008739 B = 0.004271 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.371827 B = 6553.768473 C = 8962.590835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.030 4.030 3 H 0.123 0.877 4 C 0.518 3.482 5 O -0.515 6.515 6 N -0.716 5.716 7 C 0.112 3.888 8 H 0.113 0.887 9 C 0.144 3.856 10 N -0.598 5.598 11 C -0.239 4.239 12 H 0.082 0.918 13 C 0.000 4.000 14 N -0.913 5.913 15 Si 0.919 3.081 16 H -0.284 1.284 17 H -0.289 1.289 18 H -0.283 1.283 19 C 0.129 3.871 20 C 0.117 3.883 21 H 0.121 0.879 22 N -0.276 5.276 23 C -0.016 4.016 24 C -0.068 4.068 25 N -0.276 5.276 26 N -0.104 5.104 27 C 0.019 3.981 28 C -0.208 4.208 29 C -0.216 4.216 30 C -0.040 4.040 31 O -0.160 6.160 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.396 0.604 36 H 0.021 0.979 37 H 0.123 0.877 38 H 0.257 0.743 39 H 0.056 0.944 40 H 0.042 0.958 41 H 0.194 0.806 42 H 0.186 0.814 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.338 2.546 7.956 13.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.051 4.051 3 H 0.141 0.859 4 C 0.303 3.697 5 O -0.389 6.389 6 N -0.369 5.369 7 C 0.005 3.995 8 H 0.131 0.869 9 C 0.018 3.982 10 N -0.326 5.326 11 C -0.366 4.366 12 H 0.100 0.900 13 C -0.198 4.198 14 N -0.560 5.560 15 Si 0.748 3.252 16 H -0.210 1.210 17 H -0.215 1.215 18 H -0.209 1.209 19 C 0.002 3.998 20 C 0.014 3.986 21 H 0.138 0.862 22 N -0.070 5.070 23 C -0.168 4.168 24 C -0.225 4.225 25 N -0.142 5.142 26 N -0.083 5.083 27 C -0.033 4.033 28 C -0.227 4.227 29 C -0.235 4.235 30 C -0.108 4.108 31 O -0.055 6.055 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.231 0.769 36 H 0.039 0.961 37 H 0.140 0.860 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.211 0.789 42 H 0.203 0.797 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -11.126 1.196 8.511 14.058 hybrid contribution 1.956 0.687 -0.885 2.254 sum -9.170 1.883 7.626 12.074 Atomic orbital electron populations 1.21807 0.91299 1.03631 1.03433 1.19889 0.98158 0.99279 0.87808 0.85949 1.20225 0.80500 0.84949 0.84022 1.90779 1.36196 1.25642 1.86280 1.45755 1.53756 1.32142 1.05248 1.23042 0.96488 0.98823 0.81131 0.86898 1.22408 0.91874 0.98490 0.85382 1.44447 0.99212 1.84734 1.04162 1.18955 0.81988 1.43620 0.92032 0.90006 1.24838 0.97901 1.01029 0.95992 1.69742 1.24706 1.54209 1.07294 0.86108 0.82469 0.78097 0.78500 1.21014 1.21457 1.20917 1.21705 0.85531 1.00469 0.92130 1.23210 0.99348 0.76350 0.99686 0.86164 1.47456 1.11191 1.08804 1.39528 1.23902 1.01573 0.86021 1.05269 1.23540 0.92077 1.00506 1.06359 1.75036 1.21259 1.01156 1.16793 1.78232 1.04323 1.06705 1.19090 1.21503 1.01760 0.82753 0.97251 1.21526 1.03485 1.01499 0.96184 1.21742 1.05692 0.93663 1.02379 1.23984 0.99410 1.00636 0.86806 1.84021 1.59018 1.27541 1.34895 0.91392 0.90908 0.90923 0.76862 0.96144 0.85958 0.93202 0.92635 0.94012 0.78907 0.79673 0.83563 0.83612 0.78332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.07 37.16 0.34 -1.24 16 2 C -0.03 -0.40 3.13 -92.92 -0.29 -0.69 16 3 H 0.12 1.40 8.10 -51.93 -0.42 0.98 16 4 C 0.52 8.93 7.15 -10.99 -0.08 8.85 16 5 O -0.51 -11.10 15.55 -1.30 -0.02 -11.12 16 6 N -0.72 -11.62 5.07 -51.73 -0.26 -11.88 16 7 C 0.11 2.00 3.18 -65.79 -0.21 1.79 16 8 H 0.11 2.14 7.73 -51.92 -0.40 1.74 16 9 C 0.14 3.19 5.17 -2.53 -0.01 3.18 16 10 N -0.60 -13.28 3.40 -169.86 -0.58 -13.86 16 11 C -0.24 -5.97 10.28 -15.06 -0.15 -6.13 16 12 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 13 C 0.00 -0.01 5.49 -17.43 -0.10 -0.11 16 14 N -0.91 -25.30 10.09 55.49 0.56 -24.74 16 15 Si 0.92 20.84 29.55 -169.99 -5.02 15.82 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.13 2.23 6.30 -2.92 -0.02 2.21 16 20 C 0.12 1.79 3.96 -66.10 -0.26 1.53 16 21 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 22 N -0.28 -4.21 2.42 -52.98 -0.13 -4.34 16 23 C -0.02 -0.24 9.36 -17.04 -0.16 -0.40 16 24 C -0.07 -0.94 12.05 -17.74 -0.21 -1.15 16 25 N -0.28 -4.33 12.41 30.23 0.38 -3.96 16 26 N -0.10 -1.64 12.17 60.35 0.73 -0.91 16 27 C 0.02 0.27 5.20 -35.62 -0.19 0.09 16 28 C -0.21 -2.80 10.78 -39.70 -0.43 -3.23 16 29 C -0.22 -2.65 10.91 -39.71 -0.43 -3.08 16 30 C -0.04 -0.50 12.09 29.41 0.36 -0.14 16 31 O -0.16 -2.47 10.35 -1.15 -0.01 -2.48 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 35 H 0.40 5.97 6.11 -40.82 -0.25 5.72 16 36 H 0.02 0.48 7.58 -51.93 -0.39 0.09 16 37 H 0.12 3.30 5.86 -51.93 -0.30 3.00 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.04 0.71 7.19 -51.93 -0.37 0.34 16 41 H 0.19 3.06 7.72 -52.48 -0.41 2.66 16 42 H 0.19 1.96 8.06 -52.48 -0.42 1.53 16 43 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -31.71 375.25 -6.42 -38.13 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -5.87 Total: 12.20 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.85 Total: 1.47 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.70 Total: -59.68 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.03 Total: -13.60 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.71 -6.42 -38.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070024449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.711 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds