Wall clock time and date at job start Wed Apr 1 2020 03:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47549 * 2 1 4 4 C 1.50699 * 109.47213 * 239.99475 * 2 1 3 5 5 O 1.21283 * 120.00055 * 240.00672 * 4 2 1 6 6 N 1.34776 * 119.99896 * 59.99946 * 4 2 1 7 7 C 1.46496 * 120.00084 * 179.97438 * 6 4 2 8 8 H 1.09008 * 110.91253 * 37.45558 * 7 6 4 9 9 C 1.54908 * 111.00674 * 273.55347 * 7 6 4 10 10 N 1.47425 * 104.92961 * 204.86080 * 9 7 6 11 11 C 1.36938 * 125.65179 * 204.15650 * 10 9 7 12 12 H 1.07995 * 120.00281 * 180.02562 * 11 10 9 13 13 C 1.38810 * 119.99650 * 0.02562 * 11 10 9 14 14 N 1.31621 * 120.00025 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00113 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47166 * 59.99694 * 15 13 11 17 17 H 1.48493 * 109.47565 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47135 * 300.00010 * 15 13 11 19 19 C 1.47290 * 108.55742 * 24.15407 * 10 9 7 20 20 C 1.54325 * 107.30599 * 358.92448 * 19 10 9 21 21 H 1.09002 * 110.72180 * 219.45147 * 20 19 10 22 22 N 1.46496 * 110.87283 * 96.25220 * 20 19 10 23 23 C 1.35320 * 125.86681 * 331.10882 * 22 20 19 24 24 C 1.35347 * 106.17331 * 179.90455 * 23 22 20 25 25 N 1.33766 * 106.49911 * 0.34728 * 24 23 22 26 26 N 1.28629 * 108.88624 * 359.77555 * 25 24 23 27 27 C 1.50705 * 109.46765 * 119.99897 * 2 1 3 28 28 C 1.34511 * 125.79085 * 239.71467 * 27 2 1 29 29 C 1.41380 * 106.84293 * 179.89242 * 28 27 2 30 30 C 1.34507 * 106.84134 * 0.36839 * 29 28 27 31 31 O 1.34302 * 108.42144 * 359.77464 * 30 29 28 32 32 H 1.08991 * 109.47549 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47009 * 300.00638 * 1 2 3 34 34 H 1.08996 * 109.46678 * 59.99946 * 1 2 3 35 35 H 0.97000 * 119.99844 * 0.02562 * 6 4 2 36 36 H 1.09002 * 110.36632 * 323.75475 * 9 7 6 37 37 H 1.08995 * 110.36781 * 85.96712 * 9 7 6 38 38 H 0.97001 * 119.99611 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.85762 * 239.50064 * 19 10 9 40 40 H 1.08999 * 109.87327 * 118.35916 * 19 10 9 41 41 H 1.08003 * 126.91015 * 0.02562 * 23 22 20 42 42 H 1.08003 * 126.75005 * 180.12357 * 24 23 22 43 43 H 1.08006 * 126.57626 * 0.02562 * 28 27 2 44 44 H 1.07999 * 126.58015 * 180.16742 * 29 28 27 45 45 H 1.08000 * 125.78949 * 179.75968 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6967 -1.1190 6 7 1.7068 -0.2502 -2.4545 7 6 2.1956 -0.9405 -3.6506 8 1 2.2011 -2.0203 -3.5017 9 6 3.6012 -0.4281 -4.0521 10 7 3.7059 -0.6992 -5.4974 11 6 4.8721 -0.8593 -6.1971 12 1 4.8424 -1.0552 -7.2587 13 6 6.0924 -0.7696 -5.5417 14 7 6.1286 -0.5312 -4.2478 15 14 7.6834 -0.9871 -6.4962 16 1 7.7693 0.0478 -7.5577 17 1 8.8379 -0.8456 -5.5730 18 1 7.7078 -2.3360 -7.1168 19 6 2.3468 -0.7689 -6.0608 20 6 1.3559 -0.5554 -4.8972 21 1 0.4932 -1.2137 -4.9995 22 7 0.9311 0.8447 -4.8236 23 6 1.6595 1.9159 -5.2149 24 6 0.8906 3.0032 -4.9735 25 7 -0.2524 2.5507 -4.4461 26 7 -0.1969 1.2679 -4.3705 27 6 2.0323 -0.7104 1.2305 28 6 2.8132 -0.1736 2.1851 29 6 3.0386 -1.1851 3.1469 30 6 2.3886 -2.2820 2.7184 31 8 1.7808 -1.9887 1.5572 32 1 -0.3634 -1.0275 -0.0005 33 1 -0.3633 0.5140 0.8900 34 1 -0.3632 0.5138 -0.8900 35 1 1.1494 0.5387 -2.5436 36 1 3.6843 0.6416 -3.8598 37 1 4.3730 -0.9717 -3.5073 38 1 6.9815 -0.4682 -3.7899 39 1 2.1829 -1.7473 -6.5125 40 1 2.2150 0.0135 -6.8083 41 1 2.6536 1.9051 -5.6370 42 1 1.1503 4.0339 -5.1654 43 1 3.1933 0.8370 2.2128 44 1 3.6233 -1.0954 4.0504 45 1 2.3604 -3.2367 3.2225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070024449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:49 Heat of formation + Delta-G solvation = 103.788611 kcal Electronic energy + Delta-G solvation = -31227.138215 eV Core-core repulsion = 27056.563182 eV Total energy + Delta-G solvation = -4170.575033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.32085 -43.52525 -41.10404 -39.39368 -35.89315 -35.39210 -34.73333 -33.77724 -33.43752 -31.91800 -30.54842 -29.59375 -29.02575 -26.82223 -25.60830 -24.06776 -23.63413 -22.81970 -22.65589 -21.75393 -21.55103 -20.93255 -19.39273 -18.68878 -18.60880 -18.01128 -17.29082 -16.93831 -16.73237 -16.62700 -16.15293 -15.90471 -15.68079 -15.56911 -15.08413 -14.78261 -14.60995 -14.40712 -14.28469 -13.94550 -13.71428 -13.56623 -13.42599 -13.35794 -13.19766 -12.78234 -12.77140 -12.67429 -12.60618 -12.37076 -12.30936 -12.12741 -11.91358 -11.81304 -11.16689 -11.02054 -10.81075 -10.77479 -10.30290 -10.21746 -9.41030 -9.00928 -7.80859 -5.28506 0.60643 0.76091 1.25909 1.47186 1.48937 1.50489 1.56899 1.62532 1.66930 2.00808 2.11349 2.46619 3.14826 3.31445 3.35018 3.46122 3.50265 3.63513 3.71152 3.89441 3.91443 4.06114 4.17388 4.18202 4.25779 4.29916 4.32182 4.38924 4.66062 4.69173 4.71590 4.77545 4.78616 4.91573 4.98893 5.07566 5.09082 5.21160 5.28264 5.39159 5.47092 5.61574 5.63776 5.71430 6.19331 6.22863 6.30837 6.99602 7.07327 7.51435 7.68178 8.26755 9.19387 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008739 B = 0.004271 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.371827 B = 6553.768473 C = 8962.590835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.024 4.024 3 H 0.143 0.857 4 C 0.514 3.486 5 O -0.565 6.565 6 N -0.705 5.705 7 C 0.122 3.878 8 H 0.101 0.899 9 C 0.160 3.840 10 N -0.615 5.615 11 C -0.236 4.236 12 H 0.094 0.906 13 C -0.059 4.059 14 N -0.945 5.945 15 Si 0.977 3.023 16 H -0.273 1.273 17 H -0.302 1.302 18 H -0.278 1.278 19 C 0.128 3.872 20 C 0.134 3.866 21 H 0.154 0.846 22 N -0.277 5.277 23 C -0.029 4.029 24 C -0.053 4.053 25 N -0.289 5.289 26 N -0.107 5.107 27 C -0.011 4.011 28 C -0.215 4.215 29 C -0.225 4.225 30 C -0.047 4.047 31 O -0.186 6.186 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.404 0.596 36 H 0.000 1.000 37 H 0.071 0.929 38 H 0.245 0.755 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.184 0.816 42 H 0.218 0.782 43 H 0.163 0.837 44 H 0.172 0.828 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.007 3.368 7.603 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.045 4.045 3 H 0.160 0.840 4 C 0.301 3.699 5 O -0.442 6.442 6 N -0.358 5.358 7 C 0.014 3.986 8 H 0.119 0.881 9 C 0.034 3.966 10 N -0.342 5.342 11 C -0.365 4.365 12 H 0.111 0.889 13 C -0.252 4.252 14 N -0.594 5.594 15 Si 0.806 3.194 16 H -0.199 1.199 17 H -0.229 1.229 18 H -0.204 1.204 19 C 0.002 3.998 20 C 0.031 3.969 21 H 0.172 0.828 22 N -0.071 5.071 23 C -0.180 4.180 24 C -0.210 4.210 25 N -0.155 5.155 26 N -0.086 5.086 27 C -0.062 4.062 28 C -0.234 4.234 29 C -0.244 4.244 30 C -0.114 4.114 31 O -0.082 6.082 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.241 0.759 36 H 0.018 0.982 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.201 0.799 42 H 0.235 0.765 43 H 0.180 0.820 44 H 0.189 0.811 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -12.857 2.047 8.124 15.345 hybrid contribution 2.458 0.447 -0.770 2.614 sum -10.399 2.494 7.353 12.978 Atomic orbital electron populations 1.21779 0.89195 1.03449 1.04819 1.19968 0.99778 0.99401 0.85375 0.83969 1.21007 0.79396 0.84370 0.85136 1.90752 1.38455 1.28010 1.86999 1.45659 1.53290 1.32113 1.04706 1.22636 0.94883 0.98140 0.82929 0.88078 1.21912 0.93052 0.96404 0.85277 1.44581 1.00660 1.84566 1.04376 1.19369 0.83005 1.41392 0.92690 0.88868 1.25595 1.00875 1.02094 0.96680 1.70046 1.24164 1.56431 1.08772 0.85171 0.78765 0.78305 0.77180 1.19901 1.22891 1.20361 1.21866 0.83298 1.01719 0.92884 1.23073 0.99669 0.77212 0.96952 0.82845 1.47424 1.11264 1.08635 1.39763 1.23911 1.01461 0.86545 1.06089 1.24031 0.90881 1.01609 1.04500 1.75047 1.21977 1.01129 1.17318 1.78231 1.04225 1.06971 1.19195 1.21801 1.03206 0.83001 0.98162 1.21918 1.02728 1.02590 0.96213 1.22136 1.05891 0.93239 1.03114 1.24795 0.98513 1.02168 0.85925 1.84000 1.59902 1.28073 1.36194 0.92355 0.88691 0.90240 0.75861 0.98217 0.91074 0.94573 0.90726 0.92780 0.79933 0.76541 0.81982 0.81067 0.74996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.07 71.98 0.65 -2.11 16 2 C -0.02 -0.64 3.13 -12.28 -0.04 -0.68 16 3 H 0.14 3.11 8.10 -2.39 -0.02 3.09 16 4 C 0.51 18.06 7.15 87.66 0.63 18.69 16 5 O -0.56 -25.46 15.55 3.51 0.05 -25.41 16 6 N -0.71 -22.85 5.07 -435.97 -2.21 -25.06 16 7 C 0.12 4.38 3.18 46.38 0.15 4.53 16 8 H 0.10 3.92 7.73 -2.38 -0.02 3.91 16 9 C 0.16 7.33 5.17 86.85 0.45 7.78 16 10 N -0.61 -27.45 3.40 -691.31 -2.35 -29.80 16 11 C -0.24 -11.87 10.28 84.03 0.86 -11.00 16 12 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 13 C -0.06 -3.16 5.49 84.86 0.47 -2.69 16 14 N -0.95 -54.84 10.09 21.65 0.22 -54.62 16 15 Si 0.98 43.57 29.55 68.60 2.03 45.59 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 17 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 19 C 0.13 4.22 6.30 86.68 0.55 4.77 16 20 C 0.13 3.87 3.96 46.18 0.18 4.06 16 21 H 0.15 3.53 8.14 -2.39 -0.02 3.51 16 22 N -0.28 -7.91 2.42 -321.54 -0.78 -8.69 16 23 C -0.03 -0.82 9.36 83.49 0.78 -0.04 16 24 C -0.05 -1.35 12.05 83.73 1.01 -0.34 16 25 N -0.29 -8.32 12.41 -58.26 -0.72 -9.04 16 26 N -0.11 -3.12 12.17 37.02 0.45 -2.67 16 27 C -0.01 -0.33 5.20 24.83 0.13 -0.20 16 28 C -0.22 -5.67 10.78 22.19 0.24 -5.43 16 29 C -0.23 -5.27 10.91 22.19 0.24 -5.02 16 30 C -0.05 -1.12 12.09 66.97 0.81 -0.31 16 31 O -0.19 -5.77 10.35 4.04 0.04 -5.73 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.08 1.51 7.56 -2.39 -0.02 1.49 16 35 H 0.40 11.78 6.11 -92.71 -0.57 11.22 16 36 H 0.00 0.00 7.58 -2.39 -0.02 -0.02 16 37 H 0.07 4.08 5.86 -2.39 -0.01 4.06 16 38 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 40 H 0.05 1.71 7.19 -2.39 -0.02 1.69 16 41 H 0.18 5.68 7.72 -2.91 -0.02 5.65 16 42 H 0.22 3.86 8.06 -2.91 -0.02 3.83 16 43 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 44 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 45 H 0.23 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -72.05 375.25 4.30 -67.75 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.46 Total: 35.68 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 7.11 Total: 11.99 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -5.39 Total: -129.88 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: 0.10 Total: -31.13 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -72.05 4.30 -67.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070024449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.538 kcal (2) G-P(sol) polarization free energy of solvation -72.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds