Wall clock time and date at job start Wed Apr 1 2020 02:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.91941 * 2 1 4 4 C 1.54910 * 111.00212 * 236.09594 * 2 1 3 5 5 N 1.47426 * 104.83353 * 204.91863 * 4 2 1 6 6 C 1.36938 * 125.64816 * 204.09640 * 5 4 2 7 7 H 1.07998 * 120.00070 * 5.42199 * 6 5 4 8 8 C 1.38812 * 119.99977 * 185.42274 * 6 5 4 9 9 N 1.31620 * 120.00122 * 354.23823 * 8 6 5 10 10 Si 1.86802 * 120.00108 * 174.23010 * 8 6 5 11 11 H 1.48495 * 109.47108 * 275.01137 * 10 8 6 12 12 H 1.48498 * 109.46667 * 35.00800 * 10 8 6 13 13 H 1.48491 * 109.47018 * 155.00539 * 10 8 6 14 14 C 1.47016 * 108.70303 * 24.35461 * 5 4 2 15 15 C 1.54338 * 107.26682 * 358.59115 * 14 5 4 16 16 H 1.09001 * 110.51593 * 96.44632 * 15 14 5 17 17 N 1.46501 * 110.84963 * 219.67031 * 15 14 5 18 18 C 1.34777 * 119.99904 * 268.69015 * 17 15 14 19 19 O 1.21537 * 119.99957 * 359.97438 * 18 17 15 20 20 C 1.47910 * 119.99790 * 180.02562 * 18 17 15 21 21 C 1.39606 * 121.00986 * 318.01260 * 20 18 17 22 22 C 1.39079 * 119.23419 * 179.70941 * 21 20 18 23 23 O 1.35731 * 119.27259 * 180.26739 * 22 21 20 24 24 N 1.31864 * 121.45284 * 0.59585 * 22 21 20 25 25 C 1.33085 * 121.82988 * 359.69474 * 24 22 21 26 26 N 1.35725 * 133.20633 * 179.97438 * 25 24 22 27 27 C 1.30210 * 109.67978 * 180.02562 * 26 25 24 28 28 N 1.35968 * 110.07753 * 359.97438 * 27 26 25 29 29 C 1.46498 * 126.36220 * 179.97438 * 28 27 26 30 30 C 1.37607 * 107.27095 * 0.02562 * 28 27 26 31 31 H 1.09001 * 109.47078 * 182.44959 * 1 2 3 32 32 H 1.09000 * 109.46773 * 302.44621 * 1 2 3 33 33 H 1.08999 * 109.47326 * 62.44355 * 1 2 3 34 34 H 1.09004 * 110.36452 * 86.08290 * 4 2 1 35 35 H 1.08998 * 110.46407 * 323.80347 * 4 2 1 36 36 H 0.96991 * 120.00272 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.88251 * 118.13215 * 14 5 4 38 38 H 1.08996 * 109.88584 * 239.29845 * 14 5 4 39 39 H 0.96995 * 119.99966 * 88.68945 * 17 15 14 40 40 H 1.08001 * 120.38091 * 359.97438 * 21 20 18 41 41 H 0.96698 * 114.00549 * 270.32148 * 23 22 21 42 42 H 1.08002 * 124.95585 * 180.02562 * 27 26 25 43 43 H 1.08997 * 109.47264 * 263.76472 * 29 28 27 44 44 H 1.08994 * 109.47146 * 23.77304 * 29 28 27 45 45 H 1.09002 * 109.46726 * 143.77200 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2432 -0.7733 6 6 4.4639 -1.5668 -1.6072 7 1 4.3626 -1.4289 -2.6736 8 6 5.6453 -2.0722 -1.0820 9 7 5.8121 -2.1344 0.2221 10 14 6.9982 -2.6643 -2.2259 11 1 6.7354 -4.0728 -2.6159 12 1 7.0272 -1.8114 -3.4412 13 1 8.3072 -2.5793 -1.5301 14 6 3.4657 -1.2795 0.6959 15 6 2.0861 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 7 2.2287 0.0494 2.3815 18 6 2.2005 -0.4917 3.6155 19 8 2.0563 -1.6910 3.7500 20 6 2.3438 0.3741 4.8062 21 6 3.2789 1.4104 4.8335 22 6 3.3782 2.2058 5.9700 23 8 4.2833 3.2170 5.9954 24 7 2.6170 1.9952 7.0260 25 6 1.7137 1.0183 7.0564 26 7 0.8279 0.6008 7.9962 27 6 0.1520 -0.4149 7.5412 28 7 0.5573 -0.7176 6.2791 29 6 0.0360 -1.7950 5.4344 30 6 1.5489 0.1754 5.9432 31 1 -0.3633 -1.0267 0.0439 32 1 -0.3633 0.5514 0.8673 33 1 -0.3634 0.4754 -0.9111 34 1 2.1560 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4043 36 1 6.6377 -2.4872 0.5892 37 1 3.6601 -2.2965 1.0366 38 1 4.2424 -0.6086 1.0630 39 1 2.3434 1.0066 2.2742 40 1 3.9147 1.5950 3.9803 41 1 5.1527 2.9585 6.3304 42 1 -0.6187 -0.9395 8.0863 43 1 0.6804 -2.6697 5.5222 44 1 -0.9729 -2.0531 5.7561 45 1 0.0128 -1.4638 4.3962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079832233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:09 Heat of formation + Delta-G solvation = 53.558968 kcal Electronic energy + Delta-G solvation = -30651.788661 eV Core-core repulsion = 26479.035507 eV Total energy + Delta-G solvation = -4172.753154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.67162 -39.91032 -39.30099 -37.70672 -36.41743 -34.42296 -34.14851 -32.91304 -32.04991 -30.47306 -29.41756 -28.06455 -27.17847 -25.76907 -25.02914 -23.65487 -23.17284 -22.04574 -20.56842 -20.14818 -19.80267 -18.88323 -18.17170 -17.48203 -17.05503 -16.98964 -16.28340 -16.01209 -15.37292 -15.34541 -14.98525 -14.67539 -14.26418 -14.20302 -13.80078 -13.75889 -13.46518 -13.25823 -12.91921 -12.82728 -12.59970 -12.11396 -12.00884 -11.91779 -11.81248 -11.47221 -11.14968 -11.01165 -10.92796 -10.83513 -10.76816 -10.51202 -10.23308 -10.07979 -10.02021 -9.79036 -9.32499 -8.96524 -8.74168 -8.66173 -8.62319 -6.91625 -5.77930 -3.12324 0.25397 0.88916 2.15876 2.27367 2.81888 3.02699 3.13451 3.36765 3.41782 3.43541 3.53610 4.07445 4.11988 4.43713 4.48122 4.54656 4.66209 4.84739 4.95274 5.05803 5.10356 5.19966 5.30875 5.37416 5.45834 5.50073 5.57430 5.63519 5.85290 5.85929 5.88660 6.02058 6.04513 6.05471 6.20333 6.35534 6.52779 6.53849 6.68636 6.80426 7.17228 7.37420 7.43198 7.47818 7.64186 7.74755 7.77395 8.15443 8.20343 9.13832 9.74692 10.38988 11.33348 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012872 B = 0.003118 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.683691 B = 8977.220663 C = 9788.097584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.141 3.859 5 N -0.605 5.605 6 C -0.233 4.233 7 H 0.079 0.921 8 C -0.005 4.005 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.288 1.288 12 H -0.281 1.281 13 H -0.291 1.291 14 C 0.174 3.826 15 C 0.118 3.882 16 H 0.091 0.909 17 N -0.696 5.696 18 C 0.557 3.443 19 O -0.526 6.526 20 C -0.047 4.047 21 C -0.139 4.139 22 C 0.330 3.670 23 O -0.475 6.475 24 N -0.455 5.455 25 C 0.269 3.731 26 N -0.487 5.487 27 C 0.287 3.713 28 N -0.476 5.476 29 C 0.082 3.918 30 C 0.026 3.974 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.023 0.977 36 H 0.253 0.747 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.400 0.600 40 H 0.160 0.840 41 H 0.404 0.596 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.417 5.110 10.581 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.097 0.903 4 C 0.015 3.985 5 N -0.332 5.332 6 C -0.361 4.361 7 H 0.097 0.903 8 C -0.202 4.202 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.215 1.215 12 H -0.207 1.207 13 H -0.217 1.217 14 C 0.048 3.952 15 C 0.014 3.986 16 H 0.109 0.891 17 N -0.345 5.345 18 C 0.342 3.658 19 O -0.404 6.404 20 C -0.061 4.061 21 C -0.162 4.162 22 C 0.138 3.862 23 O -0.281 6.281 24 N -0.176 5.176 25 C 0.026 3.974 26 N -0.208 5.208 27 C -0.001 4.001 28 N -0.164 5.164 29 C -0.060 4.060 30 C -0.089 4.089 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.235 0.765 40 H 0.177 0.823 41 H 0.261 0.739 42 H 0.242 0.758 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.790 5.286 11.871 18.233 hybrid contribution 1.344 -1.005 -1.820 2.475 sum -11.446 4.281 10.051 15.823 Atomic orbital electron populations 1.21697 0.94977 1.01703 1.01118 1.22636 0.94890 0.99628 0.96274 0.90303 1.21579 0.87615 0.95086 0.94266 1.44384 1.07697 1.79484 1.01633 1.19032 0.91596 1.36128 0.89344 0.90279 1.24830 0.98210 1.01119 0.96013 1.69950 1.26263 1.50878 1.09438 0.86154 0.81220 0.78901 0.79580 1.21479 1.20713 1.21690 1.21480 0.89703 1.00432 0.83602 1.22625 1.00776 0.92669 0.82540 0.89077 1.45913 1.71995 1.11400 1.05234 1.17948 0.77553 0.87472 0.82874 1.90800 1.49153 1.14208 1.86189 1.19231 0.96758 0.96916 0.93171 1.22179 0.99847 0.93333 1.00891 1.18499 0.91684 0.88046 0.87953 1.84830 1.24068 1.32975 1.86242 1.65844 1.05476 1.17439 1.28873 1.18892 0.96312 0.92761 0.89401 1.70367 1.08985 1.12853 1.28570 1.25658 0.98450 0.93624 0.82377 1.45186 1.29738 1.26662 1.14827 1.22279 0.99501 0.88840 0.95340 1.19445 0.95635 0.96106 0.97664 0.92604 0.93257 0.92562 0.93884 0.95953 0.93649 0.93049 0.93392 0.76546 0.82275 0.73864 0.75802 0.89216 0.89551 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.30 37.16 0.35 -1.30 16 2 C -0.11 -1.74 3.27 -88.47 -0.29 -2.03 16 3 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 4 C 0.14 2.69 6.70 -2.53 -0.02 2.67 16 5 N -0.61 -14.73 3.39 -170.07 -0.58 -15.31 16 6 C -0.23 -6.29 10.27 -15.06 -0.15 -6.45 16 7 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 8 C -0.01 -0.14 5.48 -17.43 -0.10 -0.23 16 9 N -0.92 -26.54 10.35 55.49 0.57 -25.96 16 10 Si 0.91 21.71 29.56 -169.99 -5.02 16.68 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.17 4.02 5.14 -3.06 -0.02 4.01 16 15 C 0.12 2.04 2.78 -66.08 -0.18 1.85 16 16 H 0.09 1.64 7.42 -51.93 -0.39 1.25 16 17 N -0.70 -10.10 5.05 -52.94 -0.27 -10.36 16 18 C 0.56 8.51 6.64 -12.30 -0.08 8.43 16 19 O -0.53 -9.35 13.28 5.33 0.07 -9.28 16 20 C -0.05 -0.65 5.76 -104.71 -0.60 -1.25 16 21 C -0.14 -1.72 9.43 -38.76 -0.37 -2.09 16 22 C 0.33 4.30 7.71 -17.23 -0.13 4.16 16 23 O -0.47 -5.11 13.55 -18.90 -0.26 -5.37 16 24 N -0.46 -7.01 10.41 -12.77 -0.13 -7.14 16 25 C 0.27 4.08 8.37 -156.98 -1.31 2.77 16 26 N -0.49 -6.68 11.27 -13.59 -0.15 -6.83 16 27 C 0.29 2.75 12.49 -89.77 -1.12 1.63 16 28 N -0.48 -5.30 3.19 -122.88 -0.39 -5.70 16 29 C 0.08 0.74 9.42 59.85 0.56 1.31 16 30 C 0.03 0.37 6.77 -83.66 -0.57 -0.20 16 31 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.05 1.40 7.39 -51.93 -0.38 1.02 16 38 H 0.05 1.23 7.40 -51.93 -0.38 0.84 16 39 H 0.40 4.87 8.22 -40.82 -0.34 4.54 16 40 H 0.16 1.70 8.04 -52.49 -0.42 1.27 16 41 H 0.40 2.37 9.06 45.56 0.41 2.78 16 42 H 0.23 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.09 0.91 7.77 -51.93 -0.40 0.51 16 44 H 0.09 0.44 8.13 -51.93 -0.42 0.02 16 45 H 0.09 0.98 6.19 -51.93 -0.32 0.66 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -36.36 373.33 -9.70 -46.06 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.14 Total: 4.31 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: -4.03 Total: 13.28 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -0.95 Total: -71.30 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.19 Total: -14.65 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.36 -9.70 -46.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079832233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.622 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds