Wall clock time and date at job start Wed Apr 1 2020 02:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.91941 * 2 1 4 4 C 1.54910 * 111.00212 * 236.09594 * 2 1 3 5 5 N 1.47426 * 104.83353 * 204.91863 * 4 2 1 6 6 C 1.36938 * 125.64816 * 204.09640 * 5 4 2 7 7 H 1.07998 * 120.00070 * 5.42199 * 6 5 4 8 8 C 1.38812 * 119.99977 * 185.42274 * 6 5 4 9 9 N 1.31620 * 120.00122 * 354.23823 * 8 6 5 10 10 Si 1.86802 * 120.00108 * 174.23010 * 8 6 5 11 11 H 1.48495 * 109.47108 * 275.01137 * 10 8 6 12 12 H 1.48498 * 109.46667 * 35.00800 * 10 8 6 13 13 H 1.48491 * 109.47018 * 155.00539 * 10 8 6 14 14 C 1.47016 * 108.70303 * 24.35461 * 5 4 2 15 15 C 1.54338 * 107.26682 * 358.59115 * 14 5 4 16 16 H 1.09001 * 110.51593 * 96.44632 * 15 14 5 17 17 N 1.46501 * 110.84963 * 219.67031 * 15 14 5 18 18 C 1.34777 * 119.99904 * 268.69015 * 17 15 14 19 19 O 1.21537 * 119.99957 * 359.97438 * 18 17 15 20 20 C 1.47910 * 119.99790 * 180.02562 * 18 17 15 21 21 C 1.39606 * 121.00986 * 318.01260 * 20 18 17 22 22 C 1.39079 * 119.23419 * 179.70941 * 21 20 18 23 23 O 1.35731 * 119.27259 * 180.26739 * 22 21 20 24 24 N 1.31864 * 121.45284 * 0.59585 * 22 21 20 25 25 C 1.33085 * 121.82988 * 359.69474 * 24 22 21 26 26 N 1.35725 * 133.20633 * 179.97438 * 25 24 22 27 27 C 1.30210 * 109.67978 * 180.02562 * 26 25 24 28 28 N 1.35968 * 110.07753 * 359.97438 * 27 26 25 29 29 C 1.46498 * 126.36220 * 179.97438 * 28 27 26 30 30 C 1.37607 * 107.27095 * 0.02562 * 28 27 26 31 31 H 1.09001 * 109.47078 * 182.44959 * 1 2 3 32 32 H 1.09000 * 109.46773 * 302.44621 * 1 2 3 33 33 H 1.08999 * 109.47326 * 62.44355 * 1 2 3 34 34 H 1.09004 * 110.36452 * 86.08290 * 4 2 1 35 35 H 1.08998 * 110.46407 * 323.80347 * 4 2 1 36 36 H 0.96991 * 120.00272 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.88251 * 118.13215 * 14 5 4 38 38 H 1.08996 * 109.88584 * 239.29845 * 14 5 4 39 39 H 0.96995 * 119.99966 * 88.68945 * 17 15 14 40 40 H 1.08001 * 120.38091 * 359.97438 * 21 20 18 41 41 H 0.96698 * 114.00549 * 270.32148 * 23 22 21 42 42 H 1.08002 * 124.95585 * 180.02562 * 27 26 25 43 43 H 1.08997 * 109.47264 * 263.76472 * 29 28 27 44 44 H 1.08994 * 109.47146 * 23.77304 * 29 28 27 45 45 H 1.09002 * 109.46726 * 143.77200 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2432 -0.7733 6 6 4.4639 -1.5668 -1.6072 7 1 4.3626 -1.4289 -2.6736 8 6 5.6453 -2.0722 -1.0820 9 7 5.8121 -2.1344 0.2221 10 14 6.9982 -2.6643 -2.2259 11 1 6.7354 -4.0728 -2.6159 12 1 7.0272 -1.8114 -3.4412 13 1 8.3072 -2.5793 -1.5301 14 6 3.4657 -1.2795 0.6959 15 6 2.0861 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 7 2.2287 0.0494 2.3815 18 6 2.2005 -0.4917 3.6155 19 8 2.0563 -1.6910 3.7500 20 6 2.3438 0.3741 4.8062 21 6 3.2789 1.4104 4.8335 22 6 3.3782 2.2058 5.9700 23 8 4.2833 3.2170 5.9954 24 7 2.6170 1.9952 7.0260 25 6 1.7137 1.0183 7.0564 26 7 0.8279 0.6008 7.9962 27 6 0.1520 -0.4149 7.5412 28 7 0.5573 -0.7176 6.2791 29 6 0.0360 -1.7950 5.4344 30 6 1.5489 0.1754 5.9432 31 1 -0.3633 -1.0267 0.0439 32 1 -0.3633 0.5514 0.8673 33 1 -0.3634 0.4754 -0.9111 34 1 2.1560 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4043 36 1 6.6377 -2.4872 0.5892 37 1 3.6601 -2.2965 1.0366 38 1 4.2424 -0.6086 1.0630 39 1 2.3434 1.0066 2.2742 40 1 3.9147 1.5950 3.9803 41 1 5.1527 2.9585 6.3304 42 1 -0.6187 -0.9395 8.0863 43 1 0.6804 -2.6697 5.5222 44 1 -0.9729 -2.0531 5.7561 45 1 0.0128 -1.4638 4.3962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079832233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:08 Heat of formation + Delta-G solvation = 24.975328 kcal Electronic energy + Delta-G solvation = -30653.028140 eV Core-core repulsion = 26479.035507 eV Total energy + Delta-G solvation = -4173.992633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.59883 -41.15330 -40.30638 -39.19775 -37.33416 -35.72228 -35.36307 -34.42811 -33.14878 -32.16577 -30.35312 -29.63919 -28.02465 -27.40489 -26.21830 -25.09944 -24.14259 -23.21438 -21.93904 -21.64471 -20.96421 -19.90481 -19.10810 -18.90771 -18.43344 -18.14877 -17.39663 -17.20322 -16.92348 -16.38495 -16.22313 -15.74469 -15.56240 -15.49169 -15.19618 -14.78508 -14.64821 -14.48179 -14.25519 -14.09342 -13.78196 -13.36369 -13.27823 -13.09741 -12.91319 -12.89656 -12.84862 -12.60522 -12.22774 -12.07229 -12.00104 -11.87081 -11.84669 -11.69407 -11.49400 -11.43100 -10.73206 -10.37732 -10.13301 -9.90866 -9.59955 -8.91739 -7.86709 -5.22543 -0.74615 -0.09160 1.21361 1.44755 1.45200 1.47445 1.55150 1.71215 1.86941 2.17687 2.48744 2.54462 3.08728 3.25862 3.32635 3.43226 3.63126 3.67494 3.76247 3.92376 4.02449 4.05585 4.09280 4.11797 4.38821 4.46327 4.47252 4.58682 4.64441 4.70300 4.76341 4.88100 5.00122 5.03708 5.06973 5.10806 5.16619 5.27064 5.45812 5.48871 5.58420 5.74852 5.92794 6.16512 6.31269 6.35333 6.64047 6.82773 6.96820 7.08009 7.75646 8.38849 9.22794 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012872 B = 0.003118 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.683691 B = 8977.220663 C = 9788.097584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 H 0.091 0.909 4 C 0.133 3.867 5 N -0.627 5.627 6 C -0.242 4.242 7 H 0.087 0.913 8 C -0.064 4.064 9 N -0.949 5.949 10 Si 0.975 3.025 11 H -0.288 1.288 12 H -0.266 1.266 13 H -0.297 1.297 14 C 0.187 3.813 15 C 0.138 3.862 16 H 0.086 0.914 17 N -0.686 5.686 18 C 0.561 3.439 19 O -0.554 6.554 20 C -0.054 4.054 21 C -0.134 4.134 22 C 0.332 3.668 23 O -0.478 6.478 24 N -0.485 5.485 25 C 0.250 3.750 26 N -0.526 5.526 27 C 0.312 3.688 28 N -0.478 5.478 29 C 0.084 3.916 30 C 0.011 3.989 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.028 0.972 36 H 0.244 0.756 37 H -0.003 1.003 38 H 0.016 0.984 39 H 0.414 0.586 40 H 0.174 0.826 41 H 0.424 0.576 42 H 0.282 0.718 43 H 0.074 0.926 44 H 0.135 0.865 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.566 5.823 10.288 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.115 4.115 3 H 0.109 0.891 4 C 0.008 3.992 5 N -0.354 5.354 6 C -0.371 4.371 7 H 0.105 0.895 8 C -0.258 4.258 9 N -0.598 5.598 10 Si 0.803 3.197 11 H -0.215 1.215 12 H -0.190 1.190 13 H -0.224 1.224 14 C 0.061 3.939 15 C 0.032 3.968 16 H 0.104 0.896 17 N -0.336 5.336 18 C 0.347 3.653 19 O -0.432 6.432 20 C -0.068 4.068 21 C -0.157 4.157 22 C 0.141 3.859 23 O -0.287 6.287 24 N -0.207 5.207 25 C 0.007 3.993 26 N -0.248 5.248 27 C 0.026 3.974 28 N -0.166 5.166 29 C -0.057 4.057 30 C -0.105 4.105 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.016 0.984 38 H 0.034 0.966 39 H 0.251 0.749 40 H 0.191 0.809 41 H 0.285 0.715 42 H 0.297 0.703 43 H 0.093 0.907 44 H 0.153 0.847 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.959 6.033 11.550 19.838 hybrid contribution 1.986 -1.251 -1.708 2.903 sum -12.973 4.782 9.842 16.971 Atomic orbital electron populations 1.21647 0.91667 1.02328 1.02986 1.22559 0.97339 0.98957 0.92688 0.89118 1.21845 0.85261 0.95832 0.96291 1.44689 1.09255 1.79442 1.01989 1.19466 0.92352 1.35068 0.90192 0.89531 1.25651 1.00733 1.02028 0.97345 1.70193 1.26296 1.52174 1.11149 0.85144 0.78045 0.78326 0.78144 1.21463 1.19048 1.22379 1.21128 0.92454 0.96841 0.83512 1.22174 0.96908 0.93522 0.84154 0.89643 1.45712 1.71788 1.11783 1.04335 1.18154 0.76624 0.87224 0.83308 1.90788 1.50299 1.15540 1.86611 1.19107 0.97779 0.97324 0.92636 1.22284 0.99471 0.92733 1.01192 1.18570 0.91657 0.88048 0.87588 1.84784 1.25052 1.32484 1.86416 1.65854 1.06425 1.18403 1.29991 1.19194 0.96751 0.93090 0.90234 1.70370 1.10162 1.14992 1.29266 1.26782 0.97439 0.91781 0.81434 1.45439 1.29062 1.26495 1.15587 1.22362 1.01635 0.87375 0.94296 1.19558 0.96594 0.96973 0.97354 0.92658 0.91462 0.90613 0.92862 0.95453 0.94635 0.98443 0.96565 0.74932 0.80855 0.71481 0.70277 0.90695 0.84708 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.30 71.98 0.67 -1.96 16 2 C -0.10 -2.72 3.27 -9.40 -0.03 -2.75 16 3 H 0.09 2.41 8.01 -2.39 -0.02 2.39 16 4 C 0.13 4.90 6.70 86.86 0.58 5.48 16 5 N -0.63 -30.99 3.39 -691.97 -2.35 -33.34 16 6 C -0.24 -13.23 10.27 84.03 0.86 -12.37 16 7 H 0.09 4.48 7.83 -2.91 -0.02 4.45 16 8 C -0.06 -3.64 5.48 84.86 0.47 -3.17 16 9 N -0.95 -57.27 10.35 21.65 0.22 -57.05 16 10 Si 0.97 45.39 29.56 68.60 2.03 47.42 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 13 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 14 C 0.19 9.02 5.14 86.73 0.45 9.47 16 15 C 0.14 4.73 2.78 46.19 0.13 4.86 16 16 H 0.09 3.08 7.42 -2.39 -0.02 3.06 16 17 N -0.69 -19.67 5.05 -439.69 -2.22 -21.89 16 18 C 0.56 17.28 6.64 86.81 0.58 17.86 16 19 O -0.55 -20.16 13.28 -3.83 -0.05 -20.21 16 20 C -0.05 -1.51 5.76 -19.92 -0.11 -1.62 16 21 C -0.13 -3.29 9.43 22.80 0.21 -3.07 16 22 C 0.33 8.61 7.71 84.89 0.65 9.26 16 23 O -0.48 -9.98 13.55 -90.54 -1.23 -11.20 16 24 N -0.48 -14.99 10.41 -307.35 -3.20 -18.19 16 25 C 0.25 7.54 8.37 134.30 1.12 8.66 16 26 N -0.53 -13.86 11.27 -196.92 -2.22 -16.08 16 27 C 0.31 5.17 12.49 180.05 2.25 7.42 16 28 N -0.48 -9.88 3.19 -542.69 -1.73 -11.61 16 29 C 0.08 1.37 9.42 127.77 1.20 2.58 16 30 C 0.01 0.30 6.77 39.28 0.27 0.57 16 31 H 0.05 1.16 8.11 -2.39 -0.02 1.14 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.03 1.00 8.04 -2.39 -0.02 0.98 16 36 H 0.24 14.52 8.31 -92.72 -0.77 13.74 16 37 H 0.00 -0.16 7.39 -2.39 -0.02 -0.17 16 38 H 0.02 0.87 7.40 -2.39 -0.02 0.85 16 39 H 0.41 9.61 8.22 -92.71 -0.76 8.84 16 40 H 0.17 3.62 8.04 -2.91 -0.02 3.60 16 41 H 0.42 4.65 9.06 -74.06 -0.67 3.98 16 42 H 0.28 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.07 1.47 7.77 -2.39 -0.02 1.45 16 44 H 0.13 0.84 8.13 -2.39 -0.02 0.82 16 45 H 0.07 1.45 6.19 -2.39 -0.01 1.44 16 Total: -1.00 -84.13 373.33 -1.83 -85.96 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -0.38 Total: 14.97 kcal Atomic # 6 Polarization: 31.91 SS G_CDS: 9.30 Total: 41.21 kcal Atomic # 7 Polarization: -146.66 SS G_CDS: -11.50 Total: -158.16 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.28 Total: -31.41 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -84.13 -1.83 -85.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079832233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.935 kcal (2) G-P(sol) polarization free energy of solvation -84.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds